RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 LRSAM1Q6UWE0 723 aa14.45□□□□□ -0.1
SMARCA1-201ENST00000371121 ZCCHC11Q5TAX3 1644 aaKnown RBP14.45□□□□□ -0.1
SMARCA1-201ENST00000371121 YEATS2Q9ULM3 1422 aa14.45□□□□□ -0.1
SMARCA1-201ENST00000371121 ANKRD45Q5TZF3 282 aa14.45□□□□□ -0.1
SMARCA1-201ENST00000371121 STAC3Q96MF2 364 aa14.45□□□□□ -0.1
SMARCA1-201ENST00000371121 USP26Q9BXU7 913 aa14.45□□□□□ -0.1
SMARCA1-201ENST00000371121 FAM177BA6PVY3 158 aa14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 U2AF1L5P0DN76 240 aaPredicted RBP14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 U2AF1Q01081 240 aaKnown RBP eCLIP14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 PTCH1Q13635 1447 aa14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 FBLN2P98095 1184 aa14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 LRRC7Q96NW7 1537 aa14.44□□□□□ -0.1
SMARCA1-201ENST00000371121 PLEKHM2Q8IWE5 1019 aa14.43□□□□□ -0.1
SMARCA1-201ENST00000371121 C16orf71Q8IYS4 520 aaPredicted RBP14.43□□□□□ -0.1
SMARCA1-201ENST00000371121 GTF2F1P35269 517 aaKnown RBP eCLIP14.43□□□□□ -0.1
SMARCA1-201ENST00000371121 C17orf53Q8N3J3 647 aaPredicted RBP14.43□□□□□ -0.1
SMARCA1-201ENST00000371121 MYRIPQ8NFW9 859 aa14.43□□□□□ -0.1
SMARCA1-201ENST00000371121 EFCAB6Q5THR3 1501 aa14.42□□□□□ -0.1
SMARCA1-201ENST00000371121 OTUD7AQ8TE49 926 aaPredicted RBP14.42□□□□□ -0.1
SMARCA1-201ENST00000371121 DLG5Q8TDM6 1919 aa14.42□□□□□ -0.1
SMARCA1-201ENST00000371121 CAMSAP1Q5T5Y3 1602 aa14.42□□□□□ -0.1
SMARCA1-201ENST00000371121 MCM5P33992 734 aa14.42□□□□□ -0.1
SMARCA1-201ENST00000371121 BRPF1P55201 1214 aaPredicted RBP14.42□□□□□ -0.1
SMARCA1-201ENST00000371121 CD163L1Q9NR16 1453 aa14.41□□□□□ -0.1
SMARCA1-201ENST00000371121 GLI2P10070 1586 aa14.41□□□□□ -0.1
SMARCA1-201ENST00000371121 FGD1P98174 961 aa14.41□□□□□ -0.1
SMARCA1-201ENST00000371121 CDC42BPGQ6DT37 1551 aa14.41□□□□□ -0.1
SMARCA1-201ENST00000371121 TSPYL6Q8N831 410 aa14.4□□□□□ -0.1
SMARCA1-201ENST00000371121 NCLP19338 710 aaKnown RBP14.4□□□□□ -0.1
SMARCA1-201ENST00000371121 ZNF830Q96NB3 372 aaPredicted RBP14.4□□□□□ -0.1
SMARCA1-201ENST00000371121 RNF214Q8ND24 703 aa14.4□□□□□ -0.1
SMARCA1-201ENST00000371121 IL16Q14005 1332 aa14.4□□□□□ -0.1
SMARCA1-201ENST00000371121 MPNDQ8N594 471 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 ZBTB7CA1YPR0 619 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 AFAP1Q8N556 730 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 TRAK1Q9UPV9 953 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 ABCC4O15439 1325 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 ATP10DQ9P241 1426 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 GCC1Q96CN9 775 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 ANKRD36BQ8N2N9 1353 aa14.39□□□□□ -0.11
SMARCA1-201ENST00000371121 MRPL50Q8N5N7 158 aaKnown RBP14.38□□□□□ -0.11
SMARCA1-201ENST00000371121 CDC45O75419 566 aa14.38□□□□□ -0.11
SMARCA1-201ENST00000371121 ALDH1L2Q3SY69 923 aa14.38□□□□□ -0.11
SMARCA1-201ENST00000371121 GOLGA6L22H0YM25 854 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 RABEP1Q15276 862 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 TMEM132EQ6IEE7 984 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 ARHGEF40Q8TER5 1519 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 NUCB2P80303 420 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 CSPP1Q1MSJ5 1256 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 VAMP4O75379 141 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 MTERF4Q7Z6M4 381 aaKnown RBP14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 CCDC39Q9UFE4 941 aa14.37□□□□□ -0.11
SMARCA1-201ENST00000371121 RGS12O14924 1447 aa14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 A0A1W2PP64 1363 aa14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 PNPLA6Q8IY17 1366 aa14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 CFAP65Q6ZU64 1925 aaKnown RBP14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 AP5Z1O43299 807 aa14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 CBX1P83916 185 aa14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 TTC22Q5TAA0 569 aa14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 ANP32BQ92688 251 aaKnown RBP14.36□□□□□ -0.11
SMARCA1-201ENST00000371121 GADD45BO75293 160 aaPredicted RBP14.35□□□□□ -0.11
SMARCA1-201ENST00000371121 SIGLEC1Q9BZZ2 1709 aa14.35□□□□□ -0.11
SMARCA1-201ENST00000371121 ATP7AQ04656 1500 aa14.35□□□□□ -0.11
SMARCA1-201ENST00000371121 GTF2E1P29083 439 aaPredicted RBP14.34□□□□□ -0.11
SMARCA1-201ENST00000371121 PIBF1Q8WXW3 757 aa14.34□□□□□ -0.11
SMARCA1-201ENST00000371121 FAM135BQ49AJ0 1406 aa14.34□□□□□ -0.11
SMARCA1-201ENST00000371121 FANCAO15360 1455 aa14.34□□□□□ -0.11
SMARCA1-201ENST00000371121 SPTLC3Q9NUV7 552 aa14.34□□□□□ -0.11
SMARCA1-201ENST00000371121 NSD2O96028 1365 aa14.34□□□□□ -0.11
SMARCA1-201ENST00000371121 SMARCA5O60264 1052 aaPredicted RBP14.33□□□□□ -0.11
SMARCA1-201ENST00000371121 THUMPD2Q9BTF0 503 aaKnown RBP14.33□□□□□ -0.11
SMARCA1-201ENST00000371121 C14orf93Q9H972 538 aaKnown RBP14.33□□□□□ -0.11
SMARCA1-201ENST00000371121 SDSP20132 328 aa14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 FOXD4L5Q5VV16 416 aaPredicted RBP14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 FOXD4L4Q8WXT5 416 aaPredicted RBP14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 TTC12Q9H892 705 aaPredicted RBP14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 BCL2L12Q9HB09 334 aa14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 KIF20BQ96Q89 1820 aa14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 BRD1O95696 1058 aa14.33□□□□□ -0.12
SMARCA1-201ENST00000371121 CFAP53Q96M91 514 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 KCNF1Q9H3M0 494 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 HMGN5P82970 282 aaKnown RBP14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 FKBP5Q13451 457 aaPredicted RBP14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 PPP4R3BQ5MIZ7 849 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 CHD1O14646 1710 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 PREX1Q8TCU6 1659 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 KIAA2012Q0VF49 1180 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 NOLC1Q14978 699 aaKnown RBP eCLIP14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 PHACTR3Q96KR7 559 aa14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 CWC22Q9HCG8 908 aaKnown RBP14.32□□□□□ -0.12
SMARCA1-201ENST00000371121 U2SURPO15042 1029 aaKnown RBP14.31□□□□□ -0.12
SMARCA1-201ENST00000371121 SLC24A1O60721 1099 aa14.31□□□□□ -0.12
SMARCA1-201ENST00000371121 DCTPP1Q9H773 170 aa14.31□□□□□ -0.12
SMARCA1-201ENST00000371121 GGNBP2Q9H3C7 697 aa14.31□□□□□ -0.12
SMARCA1-201ENST00000371121 FBLN1P23142 703 aa14.31□□□□□ -0.12
SMARCA1-201ENST00000371121 ABCA9Q8IUA7 1624 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 ANKRD7Q92527 254 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 KIDINS220Q9ULH0 1771 aa14.3□□□□□ -0.12
SMARCA1-201ENST00000371121 MAP2P11137 1827 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms