RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 LRRFIP2Q9Y608 721 aaKnown RBP11.55□□□□□ -0.56
CHD3-202ENST00000358181 FANCD2Q9BXW9 1451 aa11.55□□□□□ -0.56
CHD3-202ENST00000358181 MAP4K4O95819 1239 aaPredicted RBP11.55□□□□□ -0.56
CHD3-202ENST00000358181 TICAM2Q86XR7 235 aa11.55□□□□□ -0.56
CHD3-202ENST00000358181 DZIP1Q86YF9 867 aaKnown RBP11.55□□□□□ -0.56
CHD3-202ENST00000358181 INCENPQ9NQS7 918 aa11.55□□□□□ -0.56
CHD3-202ENST00000358181 KIAA0754O94854 1291 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 PDE3BQ13370 1112 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 OTUD6BQ8N6M0 293 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 PPM1EQ8WY54 764 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 KIF15Q9NS87 1388 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 GOLGA6L7A0A1B0GV03 622 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 CFAP45Q9UL16 551 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 MYBBP1AQ9BQG0 1328 aaKnown RBP11.54□□□□□ -0.56
CHD3-202ENST00000358181 TMOD2Q9NZR1 351 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 VGFO15240 615 aaPredicted RBP11.54□□□□□ -0.56
CHD3-202ENST00000358181 POTEJP0CG39 1038 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 DHX8Q14562 1220 aaKnown RBP11.54□□□□□ -0.56
CHD3-202ENST00000358181 SPC24Q8NBT2 197 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 LEKR1Q6ZMV7 388 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 USP47Q96K76 1375 aa11.54□□□□□ -0.56
CHD3-202ENST00000358181 EIF3JO75822 258 aaKnown RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 DNA2P51530 1060 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 SIL1Q9H173 461 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 TOP2AP11388 1531 aaKnown RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 MAP2K1Q02750 393 aaPredicted RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 CRACR2BQ8N4Y2 399 aaPredicted RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 CCDC85AQ96PX6 553 aaPredicted RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 DIAPH1O60610 1272 aaKnown RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 KCNA4P22459 653 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 ESCO1Q5FWF5 840 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 GIMAP7Q8NHV1 300 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 ERC2O15083 957 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 SERPINC1P01008 464 aa11.53□□□□□ -0.56
CHD3-202ENST00000358181 XPCQ01831 940 aaPredicted RBP11.53□□□□□ -0.56
CHD3-202ENST00000358181 CWC15Q9P013 229 aaKnown RBP11.52□□□□□ -0.56
CHD3-202ENST00000358181 LMAN1P49257 510 aa11.52□□□□□ -0.56
CHD3-202ENST00000358181 BIRC2Q13490 618 aa11.52□□□□□ -0.57
CHD3-202ENST00000358181 PUF60Q9UHX1 559 aaKnown RBP11.52□□□□□ -0.57
CHD3-202ENST00000358181 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.577e-9■■■■■ 40.5
CHD3-202ENST00000358181 SLC4A8Q2Y0W8 1093 aa11.52□□□□□ -0.57
CHD3-202ENST00000358181 MYL6BP14649 208 aa11.52□□□□□ -0.57
CHD3-202ENST00000358181 TNIP1Q15025 636 aa11.52□□□□□ -0.57
CHD3-202ENST00000358181 JAKMIP3Q5VZ66 844 aa11.51□□□□□ -0.57
CHD3-202ENST00000358181 RNF214Q8ND24 703 aa11.51□□□□□ -0.57
CHD3-202ENST00000358181 CCDC150Q8NCX0 1101 aa11.51□□□□□ -0.57
CHD3-202ENST00000358181 TIGD1Q96MW7 591 aa11.51□□□□□ -0.57
CHD3-202ENST00000358181 TERF1P54274 439 aa11.51□□□□□ -0.57
CHD3-202ENST00000358181 RAI14Q9P0K7 980 aa11.51□□□□□ -0.57
CHD3-202ENST00000358181 KIF20AO95235 890 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 CTNNA2P26232 953 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 TOM1L2Q6ZVM7 507 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 DZIP1LQ8IYY4 767 aaKnown RBP11.5□□□□□ -0.57
CHD3-202ENST00000358181 TRIM5Q9C035 493 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 FERP16591 822 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 STIM1Q13586 685 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 CCDC158Q5M9N0 1113 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 ZKSCAN2Q63HK3 967 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 TMCO4Q5TGY1 634 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 PPFIBP1Q86W92 1011 aa11.5□□□□□ -0.57
CHD3-202ENST00000358181 REC8O95072 547 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 RBM10P98175 930 aaKnown RBP11.49□□□□□ -0.57
CHD3-202ENST00000358181 AFAP1Q8N556 730 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 PANK1Q8TE04 598 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 MPHOSPH8Q99549 860 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 ATP2B3Q16720 1220 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 C1orf115Q9H7X2 142 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 RBM25P49756 843 aaKnown RBP11.49□□□□□ -0.57
CHD3-202ENST00000358181 RAB3IL1Q8TBN0 382 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 FKBP4Q02790 459 aaKnown RBP eCLIP11.49□□□□□ -0.57
CHD3-202ENST00000358181 GSTTP1A0A1W2PQM5 241 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 CCDC178Q5BJE1 867 aa11.49□□□□□ -0.57
CHD3-202ENST00000358181 BMS1Q14692 1282 aaKnown RBP11.48□□□□□ -0.57
CHD3-202ENST00000358181 SPATA24Q86W54 205 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 UBE2Q2Q8WVN8 375 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 LNPKQ9C0E8 428 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 CABP4P57796 275 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 NLRP6P59044 892 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 RABEP1Q15276 862 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 DPH6Q7L8W6 267 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 MPNDQ8N594 471 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 ABTB2Q8N961 1025 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 RRP1P56182 461 aaKnown RBP11.48□□□□□ -0.57
CHD3-202ENST00000358181 TXNDC2Q86VQ3 553 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 SIRT1Q96EB6 747 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 NINLQ9Y2I6 1382 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 TAF12Q16514 161 aa11.48□□□□□ -0.57
CHD3-202ENST00000358181 ATP2C2O75185 946 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 UBTFL1P0CB47 393 aaPredicted RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 STK38Q15208 465 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 LARP1Q6PKG0 1096 aaKnown RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 SLC26A8Q96RN1 970 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 MMRN2Q9H8L6 949 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 DHX57Q6P158 1386 aaKnown RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 TDO2P48775 406 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 CCDC96Q2M329 555 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 KIAA1328Q86T90 577 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 PROCA1Q8NCQ7 364 aaPredicted RBP11.47□□□□□ -0.57
CHD3-202ENST00000358181 ANKIB1Q9P2G1 1089 aa11.47□□□□□ -0.57
CHD3-202ENST00000358181 SKOR2Q2VWA4 1001 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms