RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 KTN1Q86UP2 1357 aaKnown RBP20.6■□□□□ 0.89
PRPF40A-201ENST00000354363 ARHGEF25Q86VW2 580 aa20.6■□□□□ 0.89
PRPF40A-201ENST00000354363 TOM1L2Q6ZVM7 507 aa20.6■□□□□ 0.89
PRPF40A-201ENST00000354363 KCNH5Q8NCM2 988 aa20.6■□□□□ 0.89
PRPF40A-201ENST00000354363 CARD11Q9BXL7 1154 aa20.6■□□□□ 0.89
PRPF40A-201ENST00000354363 NFAT5O94916 1531 aa20.59■□□□□ 0.89
PRPF40A-201ENST00000354363 USP54Q70EL1 1684 aa20.59■□□□□ 0.89
PRPF40A-201ENST00000354363 WDR17Q8IZU2 1322 aa20.58■□□□□ 0.89
PRPF40A-201ENST00000354363 SOX12O15370 315 aa20.57■□□□□ 0.88
PRPF40A-201ENST00000354363 TONSLQ96HA7 1378 aa20.57■□□□□ 0.88
PRPF40A-201ENST00000354363 CD163L1Q9NR16 1453 aa20.56■□□□□ 0.88
PRPF40A-201ENST00000354363 OVOS2A0A0G2JMS6 1433 aa20.56■□□□□ 0.88
PRPF40A-201ENST00000354363 OVOS2A0A0J9YW53 1432 aa20.56■□□□□ 0.88
PRPF40A-201ENST00000354363 OVOS2Q6IE36 1432 aa20.56■□□□□ 0.88
PRPF40A-201ENST00000354363 C11orf95C9JLR9 678 aaPredicted RBP20.56■□□□□ 0.88
PRPF40A-201ENST00000354363 DDB1Q16531 1140 aa20.55■□□□□ 0.88
PRPF40A-201ENST00000354363 LTN1O94822 1766 aa20.55■□□□□ 0.88
PRPF40A-201ENST00000354363 ABCC6O95255 1503 aa20.54■□□□□ 0.88
PRPF40A-201ENST00000354363 RGPD3A6NKT7 1758 aaPredicted RBP20.54■□□□□ 0.88
PRPF40A-201ENST00000354363 RGPD4Q7Z3J3 1758 aa20.54■□□□□ 0.88
PRPF40A-201ENST00000354363 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.53■□□□□ 0.88
PRPF40A-201ENST00000354363 USP31Q70CQ4 1352 aa20.53■□□□□ 0.88
PRPF40A-201ENST00000354363 CDCA7Q9BWT1 371 aaPredicted RBP20.52■□□□□ 0.88
PRPF40A-201ENST00000354363 CARD10Q9BWT7 1032 aa20.52■□□□□ 0.88
PRPF40A-201ENST00000354363 CSB-PGBD3P0DP91 1061 aa20.51■□□□□ 0.87
PRPF40A-201ENST00000354363 TMC1Q8TDI8 760 aa20.51■□□□□ 0.87
PRPF40A-201ENST00000354363 NME9Q86XW9 330 aa20.5■□□□□ 0.87
PRPF40A-201ENST00000354363 SLC12A5Q9H2X9 1139 aa20.5■□□□□ 0.87
PRPF40A-201ENST00000354363 NBPF14Q5TI25 921 aa20.49■□□□□ 0.87
PRPF40A-201ENST00000354363 MARCH10Q8NA82 808 aaPredicted RBP20.49■□□□□ 0.87
PRPF40A-201ENST00000354363 HDGFL2Q7Z4V5 671 aaPredicted RBP20.49■□□□□ 0.87
PRPF40A-201ENST00000354363 EDC4Q6P2E9 1401 aaKnown RBP20.48■□□□□ 0.87
PRPF40A-201ENST00000354363 CCDC7Q96M83 1385 aa20.47■□□□□ 0.87
PRPF40A-201ENST00000354363 BCL9O00512 1426 aa20.47■□□□□ 0.87
PRPF40A-201ENST00000354363 PUS7Q96PZ0 661 aaKnown RBP20.47■□□□□ 0.87
PRPF40A-201ENST00000354363 A0A1W2PP64 1363 aa20.47■□□□□ 0.87
PRPF40A-201ENST00000354363 PTF1AQ7RTS3 328 aa20.46■□□□□ 0.87
PRPF40A-201ENST00000354363 BCL11BQ9C0K0 894 aaPredicted RBP20.46■□□□□ 0.87
PRPF40A-201ENST00000354363 PLSCR1O15162 318 aa20.45■□□□□ 0.87
PRPF40A-201ENST00000354363 TERF2IPQ9NYB0 399 aa20.45■□□□□ 0.86
PRPF40A-201ENST00000354363 KAT6BQ8WYB5 2073 aa20.44■□□□□ 0.86
PRPF40A-201ENST00000354363 EXOC5O00471 708 aa20.44■□□□□ 0.86
PRPF40A-201ENST00000354363 TESK2Q96S53 571 aa20.44■□□□□ 0.86
PRPF40A-201ENST00000354363 ERBB3P21860 1342 aa20.43■□□□□ 0.86
PRPF40A-201ENST00000354363 TNS2Q63HR2 1409 aa20.43■□□□□ 0.86
PRPF40A-201ENST00000354363 ST20-MTHFSA0A0A6YYL1 179 aa20.42■□□□□ 0.86
PRPF40A-201ENST00000354363 NINLQ9Y2I6 1382 aa20.4■□□□□ 0.86
PRPF40A-201ENST00000354363 NLRP2Q9NX02 1062 aa20.4■□□□□ 0.86
PRPF40A-201ENST00000354363 NHSQ6T4R5 1651 aa20.4■□□□□ 0.86
PRPF40A-201ENST00000354363 TRIM26Q12899 539 aaPredicted RBP20.39■□□□□ 0.86
PRPF40A-201ENST00000354363 ANKRD24Q8TF21 1146 aa20.39■□□□□ 0.86
PRPF40A-201ENST00000354363 CASZ1Q86V15 1759 aa20.39■□□□□ 0.85
PRPF40A-201ENST00000354363 PROM2Q8N271 834 aa20.38■□□□□ 0.85
PRPF40A-201ENST00000354363 ANO8Q9HCE9 1232 aaPredicted RBP20.38■□□□□ 0.85
PRPF40A-201ENST00000354363 FAM208AQ9UK61 1670 aaKnown RBP20.38■□□□□ 0.85
PRPF40A-201ENST00000354363 SLC24A1O60721 1099 aa20.36■□□□□ 0.85
PRPF40A-201ENST00000354363 IL2RBP14784 551 aa20.36■□□□□ 0.85
PRPF40A-201ENST00000354363 KCNQ2O43526 872 aa20.35■□□□□ 0.85
PRPF40A-201ENST00000354363 SPON1Q9HCB6 807 aa20.35■□□□□ 0.85
PRPF40A-201ENST00000354363 RGPD2P0DJD1 1756 aa20.35■□□□□ 0.85
PRPF40A-201ENST00000354363 IP6K1Q92551 441 aa20.35■□□□□ 0.85
PRPF40A-201ENST00000354363 BTAF1O14981 1849 aa20.34■□□□□ 0.85
PRPF40A-201ENST00000354363 TXNRD1Q16881 649 aa20.34■□□□□ 0.85
PRPF40A-201ENST00000354363 ACSBG1Q96GR2 724 aa20.32■□□□□ 0.84
PRPF40A-201ENST00000354363 COG3Q96JB2 828 aa20.32■□□□□ 0.84
PRPF40A-201ENST00000354363 ANKRD36BQ8N2N9 1353 aa20.32■□□□□ 0.84
PRPF40A-201ENST00000354363 USP47Q96K76 1375 aa20.31■□□□□ 0.84
PRPF40A-201ENST00000354363 MAP3K19Q56UN5 1328 aa20.3■□□□□ 0.84
PRPF40A-201ENST00000354363 LTV1Q96GA3 475 aaPredicted RBP20.3■□□□□ 0.84
PRPF40A-201ENST00000354363 PDGFDQ9GZP0 370 aaPredicted RBP20.3■□□□□ 0.84
PRPF40A-201ENST00000354363 PPP1R1BQ9UD71 204 aaPredicted RBP20.3■□□□□ 0.84
PRPF40A-201ENST00000354363 FBLN1P23142 703 aa20.29■□□□□ 0.84
PRPF40A-201ENST00000354363 KIF20BQ96Q89 1820 aa20.29■□□□□ 0.84
PRPF40A-201ENST00000354363 TMF1P82094 1093 aa20.28■□□□□ 0.84
PRPF40A-201ENST00000354363 STK32BQ9NY57 414 aa20.28■□□□□ 0.84
PRPF40A-201ENST00000354363 HOXC9P31274 260 aa20.27■□□□□ 0.84
PRPF40A-201ENST00000354363 SHANK3Q9BYB0 1731 aa20.27■□□□□ 0.84
PRPF40A-201ENST00000354363 AMPHP49418 695 aa20.27■□□□□ 0.83
PRPF40A-201ENST00000354363 SLC15A2Q16348 729 aa20.27■□□□□ 0.83
PRPF40A-201ENST00000354363 PAPPAQ13219 1627 aa20.27■□□□□ 0.83
PRPF40A-201ENST00000354363 FYB1O15117 783 aa20.24■□□□□ 0.83
PRPF40A-201ENST00000354363 ZBTB7AO95365 584 aa20.24■□□□□ 0.83
PRPF40A-201ENST00000354363 MYOM1P52179 1685 aa20.24■□□□□ 0.83
PRPF40A-201ENST00000354363 DDX54Q8TDD1 881 aaKnown RBP20.24■□□□□ 0.83
PRPF40A-201ENST00000354363 GGNBP2Q9H3C7 697 aa20.24■□□□□ 0.83
PRPF40A-201ENST00000354363 RTL1A6NKG5 1358 aa20.23■□□□□ 0.83
PRPF40A-201ENST00000354363 DOT1LQ8TEK3 1739 aa20.23■□□□□ 0.83
PRPF40A-201ENST00000354363 RRS1Q15050 365 aaKnown RBP20.23■□□□□ 0.83
PRPF40A-201ENST00000354363 PTGER2P43116 358 aa20.21■□□□□ 0.83
PRPF40A-201ENST00000354363 ATF5Q9Y2D1 282 aaPredicted RBP20.21■□□□□ 0.83
PRPF40A-201ENST00000354363 MEGF6O75095 1541 aa20.2■□□□□ 0.82
PRPF40A-201ENST00000354363 CDCA8Q53HL2 280 aa20.2■□□□□ 0.82
PRPF40A-201ENST00000354363 LRRC4BQ9NT99 713 aa20.19■□□□□ 0.82
PRPF40A-201ENST00000354363 QSER1Q2KHR3 1735 aa20.19■□□□□ 0.82
PRPF40A-201ENST00000354363 LY75O60449 1722 aa20.18■□□□□ 0.82
PRPF40A-201ENST00000354363 NBPF6Q5VWK0 638 aa20.18■□□□□ 0.82
PRPF40A-201ENST00000354363 ZCRB1Q8TBF4 217 aaKnown RBP20.18■□□□□ 0.82
PRPF40A-201ENST00000354363 NBPF4Q96M43 638 aa20.18■□□□□ 0.82
PRPF40A-201ENST00000354363 MTFR1LQ9H019 292 aa20.17■□□□□ 0.82
PRPF40A-201ENST00000354363 TUBGCP6Q96RT7 1819 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms