RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 PMFBP1Q8TBY8 1022 aa22.3■■□□□ 1.16
DDX28-201ENST00000332395 FAM161AQ3B820 660 aa22.29■■□□□ 1.16
DDX28-201ENST00000332395 ZBTB47Q9UFB7 747 aaPredicted RBP22.29■■□□□ 1.16
DDX28-201ENST00000332395 PCDHB15Q9Y5E8 787 aa22.29■■□□□ 1.16
DDX28-201ENST00000332395 NALCNQ8IZF0 1738 aa22.28■■□□□ 1.16
DDX28-201ENST00000332395 TRIM27P14373 513 aa22.27■■□□□ 1.16
DDX28-201ENST00000332395 C8orf34Q49A92 452 aa22.27■■□□□ 1.16
DDX28-201ENST00000332395 XRN1Q8IZH2 1706 aaKnown RBP22.27■■□□□ 1.16
DDX28-201ENST00000332395 CALD1Q05682 793 aaKnown RBP22.26■■□□□ 1.15
DDX28-201ENST00000332395 SSH2Q76I76 1423 aa22.26■■□□□ 1.15
DDX28-201ENST00000332395 ATF7IPQ6VMQ6 1270 aa22.25■■□□□ 1.15
DDX28-201ENST00000332395 THUMPD2Q9BTF0 503 aaKnown RBP22.25■■□□□ 1.15
DDX28-201ENST00000332395 LAS1LQ9Y4W2 734 aaKnown RBP22.25■■□□□ 1.15
DDX28-201ENST00000332395 DLG5Q8TDM6 1919 aa22.24■■□□□ 1.15
DDX28-201ENST00000332395 CEP170BQ9Y4F5 1589 aaPredicted RBP22.24■■□□□ 1.15
DDX28-201ENST00000332395 ALDH1L2Q3SY69 923 aa22.24■■□□□ 1.15
DDX28-201ENST00000332395 NOB1Q9ULX3 412 aaKnown RBP22.24■■□□□ 1.15
DDX28-201ENST00000332395 KIF16BQ96L93 1317 aa22.24■■□□□ 1.15
DDX28-201ENST00000332395 USP31Q70CQ4 1352 aa22.23■■□□□ 1.15
DDX28-201ENST00000332395 EIF4A2Q14240 407 aaKnown RBP22.23■■□□□ 1.15
DDX28-201ENST00000332395 LMOD3Q0VAK6 560 aa22.22■■□□□ 1.15
DDX28-201ENST00000332395 IFT57Q9NWB7 429 aa22.22■■□□□ 1.15
DDX28-201ENST00000332395 GNAI1P63096 354 aa22.22■■□□□ 1.15
DDX28-201ENST00000332395 ZNF428Q96B54 188 aa22.22■■□□□ 1.15
DDX28-201ENST00000332395 RGPD8O14715 1765 aaPredicted RBP22.22■■□□□ 1.15
DDX28-201ENST00000332395 PEAK1Q9H792 1746 aa22.21■■□□□ 1.15
DDX28-201ENST00000332395 TTC21AQ8NDW8 1320 aa22.21■■□□□ 1.15
DDX28-201ENST00000332395 RWDD1Q9H446 243 aaPredicted RBP22.21■■□□□ 1.15
DDX28-201ENST00000332395 IPO8O15397 1037 aaKnown RBP22.2■■□□□ 1.14
DDX28-201ENST00000332395 ZNF853P0CG23 659 aa22.2■■□□□ 1.14
DDX28-201ENST00000332395 DDX19BQ9UMR2 479 aa22.2■■□□□ 1.14
DDX28-201ENST00000332395 RIMS1Q86UR5 1692 aaKnown RBP22.2■■□□□ 1.14
DDX28-201ENST00000332395 ITPRIPQ8IWB1 547 aa22.19■■□□□ 1.14
DDX28-201ENST00000332395 PIK3R4Q99570 1358 aa22.18■■□□□ 1.14
DDX28-201ENST00000332395 AEBP1Q8IUX7 1158 aa22.18■■□□□ 1.14
DDX28-201ENST00000332395 NGDNQ8NEJ9 315 aaKnown RBP22.18■■□□□ 1.14
DDX28-201ENST00000332395 KCNA6P17658 529 aa22.18■■□□□ 1.14
DDX28-201ENST00000332395 BRPF1P55201 1214 aaPredicted RBP22.18■■□□□ 1.14
DDX28-201ENST00000332395 SULT6B1Q6IMI4 303 aa22.18■■□□□ 1.14
DDX28-201ENST00000332395 MBIPQ9NS73 344 aa22.18■■□□□ 1.14
DDX28-201ENST00000332395 VIRMAQ69YN4 1812 aaKnown RBP22.17■■□□□ 1.14
DDX28-201ENST00000332395 RGPD1P0DJD0 1748 aa22.17■■□□□ 1.14
DDX28-201ENST00000332395 VAMP4O75379 141 aa22.16■■□□□ 1.14
DDX28-201ENST00000332395 HSP90AB2PQ58FF8 381 aa22.16■■□□□ 1.14
DDX28-201ENST00000332395 TMEM57Q8N5G2 664 aa22.16■■□□□ 1.14
DDX28-201ENST00000332395 CFAP44Q96MT7 982 aa22.16■■□□□ 1.14
DDX28-201ENST00000332395 FAM83GA6ND36 823 aa22.16■■□□□ 1.14
DDX28-201ENST00000332395 NBR1Q14596 966 aa22.16■■□□□ 1.14
DDX28-201ENST00000332395 ANKARQ7Z5J8 1434 aa22.15■■□□□ 1.14
DDX28-201ENST00000332395 SOX12O15370 315 aa22.15■■□□□ 1.14
DDX28-201ENST00000332395 TSPYL6Q8N831 410 aa22.15■■□□□ 1.14
DDX28-201ENST00000332395 DDRGK1Q96HY6 314 aa22.15■■□□□ 1.14
DDX28-201ENST00000332395 PDZRN3Q9UPQ7 1066 aa22.15■■□□□ 1.14
DDX28-201ENST00000332395 PIK3C2AO00443 1686 aa22.14■■□□□ 1.13
DDX28-201ENST00000332395 FMN2Q9NZ56 1722 aa22.13■■□□□ 1.13
DDX28-201ENST00000332395 MAP3K19Q56UN5 1328 aa22.13■■□□□ 1.13
DDX28-201ENST00000332395 DCTN1Q14203 1278 aa22.12■■□□□ 1.13
DDX28-201ENST00000332395 MRPL50Q8N5N7 158 aaKnown RBP22.12■■□□□ 1.13
DDX28-201ENST00000332395 HDAC1Q13547 482 aaPredicted RBP22.11■■□□□ 1.13
DDX28-201ENST00000332395 ZBTB40Q9NUA8 1239 aa22.11■■□□□ 1.13
DDX28-201ENST00000332395 SBNO1A3KN83 1393 aa22.11■■□□□ 1.13
DDX28-201ENST00000332395 FLT4P35916 1363 aa22.11■■□□□ 1.13
DDX28-201ENST00000332395 TWISTNBQ3B726 338 aaPredicted RBP22.11■■□□□ 1.13
DDX28-201ENST00000332395 ZNF142P52746 1687 aaPredicted RBP22.1■■□□□ 1.13
DDX28-201ENST00000332395 ELL2O00472 640 aaPredicted RBP22.1■■□□□ 1.13
DDX28-201ENST00000332395 ARHGEF10O15013 1369 aa22.1■■□□□ 1.13
DDX28-201ENST00000332395 ARHGAP45Q92619 1136 aa22.09■■□□□ 1.13
DDX28-201ENST00000332395 C8orf58Q8NAV2 365 aa22.09■■□□□ 1.13
DDX28-201ENST00000332395 ANKLE2Q86XL3 938 aa22.08■■□□□ 1.13
DDX28-201ENST00000332395 CHD2O14647 1828 aaKnown RBP22.07■■□□□ 1.12
DDX28-201ENST00000332395 NLRP6P59044 892 aa22.05■■□□□ 1.12
DDX28-201ENST00000332395 AMPHP49418 695 aa22.05■■□□□ 1.12
DDX28-201ENST00000332395 MARF1Q9Y4F3 1742 aaKnown RBP22.04■■□□□ 1.12
DDX28-201ENST00000332395 ADAMTSL3P82987 1691 aa22.04■■□□□ 1.12
DDX28-201ENST00000332395 KDRP35968 1356 aa22.04■■□□□ 1.12
DDX28-201ENST00000332395 MCM10Q7L590 875 aa22.04■■□□□ 1.12
DDX28-201ENST00000332395 USP54Q70EL1 1684 aa22.03■■□□□ 1.12
DDX28-201ENST00000332395 SMC5Q8IY18 1101 aa22.03■■□□□ 1.12
DDX28-201ENST00000332395 ABCC4O15439 1325 aa22.02■■□□□ 1.12
DDX28-201ENST00000332395 CHL1O00533 1208 aa22.02■■□□□ 1.12
DDX28-201ENST00000332395 RTL5Q5HYW3 569 aaPredicted RBP22.01■■□□□ 1.11
DDX28-201ENST00000332395 USP19O94966 1318 aa22.01■■□□□ 1.11
DDX28-201ENST00000332395 IGSF1Q8N6C5 1336 aa22.01■■□□□ 1.11
DDX28-201ENST00000332395 ZBTB7BO15156 539 aaPredicted RBP22.01■■□□□ 1.11
DDX28-201ENST00000332395 SEC24BO95487 1268 aa22.01■■□□□ 1.11
DDX28-201ENST00000332395 CHMP4BQ9H444 224 aaKnown RBP22.01■■□□□ 1.11
DDX28-201ENST00000332395 NUTM2GQ5VZR2 741 aa22■■□□□ 1.11
DDX28-201ENST00000332395 EYA1Q99502 592 aa22■■□□□ 1.11
DDX28-201ENST00000332395 KIF24Q5T7B8 1368 aa22■■□□□ 1.11
DDX28-201ENST00000332395 ABTB2Q8N961 1025 aa21.99■■□□□ 1.11
DDX28-201ENST00000332395 CRB1P82279 1406 aa21.99■■□□□ 1.11
DDX28-201ENST00000332395 MTHFSDQ2M296 383 aaKnown RBP21.99■■□□□ 1.11
DDX28-201ENST00000332395 API5Q9BZZ5 524 aaKnown RBP21.99■■□□□ 1.11
DDX28-201ENST00000332395 HAP1P54257 671 aaPredicted RBP21.98■■□□□ 1.11
DDX28-201ENST00000332395 PHF8Q9UPP1 1060 aa21.98■■□□□ 1.11
DDX28-201ENST00000332395 KIAA0232Q92628 1395 aa21.98■■□□□ 1.11
DDX28-201ENST00000332395 SETD1BQ9UPS6 1966 aaKnown RBP21.98■■□□□ 1.11
DDX28-201ENST00000332395 FOXO3O43524 673 aa21.97■■□□□ 1.11
DDX28-201ENST00000332395 HOXC9P31274 260 aa21.97■■□□□ 1.11
DDX28-201ENST00000332395 KRT24Q2M2I5 525 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms