RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 TTC21AQ8NDW8 1320 aa11.55□□□□□ -0.56
TMEM39A-201ENST00000319172 NPC1L1Q9UHC9 1359 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 KIAA1211Q6ZU35 1233 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 IFT57Q9NWB7 429 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 RIMBP3CA6NJZ7 1639 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 RIMBP3BA6NNM3 1639 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 RIMBP3Q9UFD9 1639 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 SBNO2Q9Y2G9 1366 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 FGD1P98174 961 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 CABLES1Q8TDN4 633 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 DMRT2Q9Y5R5 561 aa11.54□□□□□ -0.56
TMEM39A-201ENST00000319172 BTBD11A6QL63 1104 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 UBTFL1P0CB47 393 aaPredicted RBP11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 MAP3K19Q56UN5 1328 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 NCLP19338 710 aaKnown RBP11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 GORABQ5T7V8 394 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 MBIPQ9NS73 344 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 MCCP23508 829 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 C19orf44Q9H6X5 657 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 AAMPQ13685 434 aa11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 NAP1L2Q9ULW6 460 aaPredicted RBP11.53□□□□□ -0.56
TMEM39A-201ENST00000319172 SPG7Q9UQ90 795 aa11.52□□□□□ -0.56
TMEM39A-201ENST00000319172 CABP4P57796 275 aa11.52□□□□□ -0.57
TMEM39A-201ENST00000319172 CFAP44Q96MT7 982 aa11.52□□□□□ -0.57
TMEM39A-201ENST00000319172 ARHGAP31Q2M1Z3 1444 aa11.52□□□□□ -0.57
TMEM39A-201ENST00000319172 TRIM27P14373 513 aa11.52□□□□□ -0.57
TMEM39A-201ENST00000319172 KIF1BO60333 1816 aa11.52□□□□□ -0.57
TMEM39A-201ENST00000319172 LRRC59Q96AG4 307 aaKnown RBP11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 FOXD4L1Q9NU39 408 aa11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 MYL6BP14649 208 aa11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 RNF17Q9BXT8 1623 aaKnown RBP11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 GTF2E1P29083 439 aaPredicted RBP11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 ANKRD24Q8TF21 1146 aa11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 RBM42Q9BTD8 480 aaKnown RBP11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 GOLGA6L22H0YM25 854 aa11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 NOL8Q76FK4 1167 aaKnown RBP11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 GPATCH3Q96I76 525 aa11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 TNNQ9UQP3 1299 aa11.51□□□□□ -0.57
TMEM39A-201ENST00000319172 F6X3S4 739 aa11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 TAF7Q15545 349 aaPredicted RBP11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 E9PCH4 1651 aa11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 EYA1Q99502 592 aa11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 GNAI3P08754 354 aa11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 MEX3CQ5U5Q3 659 aaKnown RBP11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 ROBO2Q9HCK4 1378 aa11.5□□□□□ -0.57
TMEM39A-201ENST00000319172 ADAMTS2O95450 1211 aa11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 MSH6P52701 1360 aa11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 DDX17Q92841 729 aaKnown RBP11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 EDC4Q6P2E9 1401 aaKnown RBP11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 SURF6O75683 361 aaKnown RBP11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 GCP02774 474 aa11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 KRT24Q2M2I5 525 aa11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 RSPH6AQ9H0K4 717 aa11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 BCORL1Q5H9F3 1711 aa11.49□□□□□ -0.57
TMEM39A-201ENST00000319172 PTCD1O75127 700 aaKnown RBP11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 MTHFSDQ2M296 383 aaKnown RBP11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 INO80Q9ULG1 1556 aaPredicted RBP11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 CCDC27Q2M243 656 aa11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 C8orf58Q8NAV2 365 aa11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 PLEKHG3A1L390 1219 aa11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 ALDH1L2Q3SY69 923 aa11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 ANP32BQ92688 251 aaKnown RBP11.48□□□□□ -0.57
TMEM39A-201ENST00000319172 SPHKAPQ2M3C7 1700 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 FLT4P35916 1363 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 GNAI2P04899 355 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 IL13P35225 146 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 TSPYL6Q8N831 410 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 SRCIN1Q9C0H9 1055 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 NPHP3Q7Z494 1330 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 CEP152O94986 1710 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 A2ML1A8K2U0 1454 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 G3BP1Q13283 466 aaKnown RBP eCLIP11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 AMOTQ4VCS5 1084 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 DIP2CQ9Y2E4 1556 aa11.47□□□□□ -0.57
TMEM39A-201ENST00000319172 CCT4P50991 539 aaKnown RBP11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 SIRT1Q96EB6 747 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 PRR36Q9H6K5 1346 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 PLEKHG1Q9ULL1 1385 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 KIDINS220Q9ULH0 1771 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 ANXA1P04083 346 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 IFIT2P09913 472 aaKnown RBP11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 IL16Q14005 1332 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 TRPM1Q7Z4N2 1603 aa11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 KDM5AP29375 1690 aaKnown RBP11.46□□□□□ -0.57
TMEM39A-201ENST00000319172 HOXC9P31274 260 aa11.46□□□□□ -0.58
TMEM39A-201ENST00000319172 MAP3K4Q9Y6R4 1608 aa11.46□□□□□ -0.58
TMEM39A-201ENST00000319172 ZFYVE9O95405 1425 aa11.46□□□□□ -0.58
TMEM39A-201ENST00000319172 FAM177BA6PVY3 158 aa11.46□□□□□ -0.58
TMEM39A-201ENST00000319172 RLBP1P12271 317 aa11.45□□□□□ -0.58
TMEM39A-201ENST00000319172 BACH2Q9BYV9 841 aa11.45□□□□□ -0.58
TMEM39A-201ENST00000319172 PPRC1Q5VV67 1664 aaKnown RBP11.45□□□□□ -0.58
TMEM39A-201ENST00000319172 IGHDP01880 384 aa11.44□□□□□ -0.58
TMEM39A-201ENST00000319172 TRIM35Q9UPQ4 493 aa11.44□□□□□ -0.58
TMEM39A-201ENST00000319172 ABCA6Q8N139 1617 aa11.44□□□□□ -0.58
TMEM39A-201ENST00000319172 GCC1Q96CN9 775 aa11.44□□□□□ -0.58
TMEM39A-201ENST00000319172 DNAJC5Q9H3Z4 198 aa11.44□□□□□ -0.58
TMEM39A-201ENST00000319172 ANO2Q9NQ90 1003 aa11.43□□□□□ -0.58
TMEM39A-201ENST00000319172 EXOC6BQ9Y2D4 811 aa11.43□□□□□ -0.58
TMEM39A-201ENST00000319172 DIAPH3Q9NSV4 1193 aa11.43□□□□□ -0.58
TMEM39A-201ENST00000319172 PCDHB15Q9Y5E8 787 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms