RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 WNK3Q9BYP7 1800 aa20.34■□□□□ 0.85
HMGN3-201ENST00000275036 SRCAPQ6ZRS2 3230 aa20.33■□□□□ 0.84
HMGN3-201ENST00000275036 LRRC37A3O60309 1634 aa20.32■□□□□ 0.84
HMGN3-201ENST00000275036 CCER1Q8TC90 406 aaPredicted RBP20.32■□□□□ 0.84
HMGN3-201ENST00000275036 EDC4Q6P2E9 1401 aaKnown RBP20.32■□□□□ 0.84
HMGN3-201ENST00000275036 SF3B2Q13435 895 aaKnown RBP20.31■□□□□ 0.84
HMGN3-201ENST00000275036 KCNH5Q8NCM2 988 aa20.31■□□□□ 0.84
HMGN3-201ENST00000275036 THRAP3Q9Y2W1 955 aaKnown RBP20.3■□□□□ 0.84
HMGN3-201ENST00000275036 OVOS2A0A0J9YW53 1432 aa20.29■□□□□ 0.84
HMGN3-201ENST00000275036 OVOS2Q6IE36 1432 aa20.29■□□□□ 0.84
HMGN3-201ENST00000275036 LTN1O94822 1766 aa20.29■□□□□ 0.84
HMGN3-201ENST00000275036 HDGFL2Q7Z4V5 671 aaPredicted RBP20.29■□□□□ 0.84
HMGN3-201ENST00000275036 WDR17Q8IZU2 1322 aa20.28■□□□□ 0.84
HMGN3-201ENST00000275036 DISP2A7MBM2 1401 aa20.28■□□□□ 0.84
HMGN3-201ENST00000275036 ABCC6O95255 1503 aa20.28■□□□□ 0.84
HMGN3-201ENST00000275036 PEAK1Q9H792 1746 aa20.28■□□□□ 0.84
HMGN3-201ENST00000275036 TOM1L2Q6ZVM7 507 aa20.27■□□□□ 0.84
HMGN3-201ENST00000275036 TERF2IPQ9NYB0 399 aa20.27■□□□□ 0.84
HMGN3-201ENST00000275036 NINLQ9Y2I6 1382 aa20.26■□□□□ 0.83
HMGN3-201ENST00000275036 SLC24A1O60721 1099 aa20.26■□□□□ 0.83
HMGN3-201ENST00000275036 BAG6P46379 1132 aa20.26■□□□□ 0.83
HMGN3-201ENST00000275036 EN1Q05925 392 aaPredicted RBP20.26■□□□□ 0.83
HMGN3-201ENST00000275036 FAM196AQ6ZSG2 479 aa20.26■□□□□ 0.83
HMGN3-201ENST00000275036 TRIM37O94972 964 aa20.25■□□□□ 0.83
HMGN3-201ENST00000275036 TMF1P82094 1093 aa20.25■□□□□ 0.83
HMGN3-201ENST00000275036 PDE3BQ13370 1112 aa20.25■□□□□ 0.83
HMGN3-201ENST00000275036 MYOM1P52179 1685 aa20.25■□□□□ 0.83
HMGN3-201ENST00000275036 ANKRD36BQ8N2N9 1353 aa20.21■□□□□ 0.83
HMGN3-201ENST00000275036 EZH2Q15910 746 aaKnown RBP20.21■□□□□ 0.83
HMGN3-201ENST00000275036 RREB1Q92766 1687 aa20.21■□□□□ 0.83
HMGN3-201ENST00000275036 CAMKK2Q96RR4 588 aa20.2■□□□□ 0.82
HMGN3-201ENST00000275036 CARD10Q9BWT7 1032 aa20.2■□□□□ 0.82
HMGN3-201ENST00000275036 ERBB3P21860 1342 aa20.2■□□□□ 0.82
HMGN3-201ENST00000275036 SBF2Q86WG5 1849 aa20.2■□□□□ 0.82
HMGN3-201ENST00000275036 CSB-PGBD3P0DP91 1061 aa20.19■□□□□ 0.82
HMGN3-201ENST00000275036 OVOS2A0A0G2JMS6 1433 aa20.19■□□□□ 0.82
HMGN3-201ENST00000275036 DDB1Q16531 1140 aa20.18■□□□□ 0.82
HMGN3-201ENST00000275036 NUP188Q5SRE5 1749 aa20.18■□□□□ 0.82
HMGN3-201ENST00000275036 PSDA5PKW4 1024 aaPredicted RBP20.17■□□□□ 0.82
HMGN3-201ENST00000275036 APBA3O96018 575 aa20.17■□□□□ 0.82
HMGN3-201ENST00000275036 FBLN1P23142 703 aa20.17■□□□□ 0.82
HMGN3-201ENST00000275036 KIF20BQ96Q89 1820 aa20.16■□□□□ 0.82
HMGN3-201ENST00000275036 PTF1AQ7RTS3 328 aa20.16■□□□□ 0.82
HMGN3-201ENST00000275036 MARCH10Q8NA82 808 aaPredicted RBP20.16■□□□□ 0.82
HMGN3-201ENST00000275036 CDCA8Q53HL2 280 aa20.15■□□□□ 0.82
HMGN3-201ENST00000275036 CCDC7Q96M83 1385 aa20.15■□□□□ 0.82
HMGN3-201ENST00000275036 ANKRD24Q8TF21 1146 aa20.14■□□□□ 0.81
HMGN3-201ENST00000275036 TNS2Q63HR2 1409 aa20.13■□□□□ 0.81
HMGN3-201ENST00000275036 HSPA5P11021 654 aaKnown RBP20.13■□□□□ 0.81
HMGN3-201ENST00000275036 CDCA7Q9BWT1 371 aaPredicted RBP20.13■□□□□ 0.81
HMGN3-201ENST00000275036 LRP5O75197 1615 aa20.13■□□□□ 0.81
HMGN3-201ENST00000275036 PARD3Q8TEW0 1356 aa20.12■□□□□ 0.81
HMGN3-201ENST00000275036 MAP3K19Q56UN5 1328 aa20.12■□□□□ 0.81
HMGN3-201ENST00000275036 FYB1O15117 783 aa20.12■□□□□ 0.81
HMGN3-201ENST00000275036 COG3Q96JB2 828 aa20.12■□□□□ 0.81
HMGN3-201ENST00000275036 NLRP2Q9NX02 1062 aa20.12■□□□□ 0.81
HMGN3-201ENST00000275036 BCL9O00512 1426 aa20.11■□□□□ 0.81
HMGN3-201ENST00000275036 EIF4G2P78344 907 aaKnown RBP eCLIP20.11■□□□□ 0.81
HMGN3-201ENST00000275036 R3HDM1Q15032 1099 aaKnown RBP20.11■□□□□ 0.81
HMGN3-201ENST00000275036 IP6K1Q92551 441 aa20.11■□□□□ 0.81
HMGN3-201ENST00000275036 CARD14Q9BXL6 1004 aa20.11■□□□□ 0.81
HMGN3-201ENST00000275036 GGNBP2Q9H3C7 697 aa20.11■□□□□ 0.81
HMGN3-201ENST00000275036 RGPD3A6NKT7 1758 aaPredicted RBP20.11■□□□□ 0.81
HMGN3-201ENST00000275036 RGPD4Q7Z3J3 1758 aa20.11■□□□□ 0.81
HMGN3-201ENST00000275036 FAM208AQ9UK61 1670 aaKnown RBP20.1■□□□□ 0.81
HMGN3-201ENST00000275036 RGPD2P0DJD1 1756 aa20.1■□□□□ 0.81
HMGN3-201ENST00000275036 HOXC9P31274 260 aa20.09■□□□□ 0.81
HMGN3-201ENST00000275036 C11orf95C9JLR9 678 aaPredicted RBP20.07■□□□□ 0.8
HMGN3-201ENST00000275036 EXOC5O00471 708 aa20.07■□□□□ 0.8
HMGN3-201ENST00000275036 RRS1Q15050 365 aaKnown RBP20.07■□□□□ 0.8
HMGN3-201ENST00000275036 LTV1Q96GA3 475 aaPredicted RBP20.07■□□□□ 0.8
HMGN3-201ENST00000275036 NSD3Q9BZ95 1437 aa20.07■□□□□ 0.8
HMGN3-201ENST00000275036 NHSQ6T4R5 1651 aa20.06■□□□□ 0.8
HMGN3-201ENST00000275036 IL2RBP14784 551 aa20.05■□□□□ 0.8
HMGN3-201ENST00000275036 BCL11BQ9C0K0 894 aaPredicted RBP20.05■□□□□ 0.8
HMGN3-201ENST00000275036 RTL1A6NKG5 1358 aa20.05■□□□□ 0.8
HMGN3-201ENST00000275036 POLR3GLQ9BT43 218 aa20.04■□□□□ 0.8
HMGN3-201ENST00000275036 SHANK3Q9BYB0 1731 aa20.04■□□□□ 0.8
HMGN3-201ENST00000275036 KCNQ2O43526 872 aa20.03■□□□□ 0.8
HMGN3-201ENST00000275036 AMPHP49418 695 aa20.03■□□□□ 0.8
HMGN3-201ENST00000275036 PLSCR1O15162 318 aa20.02■□□□□ 0.8
HMGN3-201ENST00000275036 PROM2Q8N271 834 aa20.02■□□□□ 0.8
HMGN3-201ENST00000275036 MEGF6O75095 1541 aa20.01■□□□□ 0.79
HMGN3-201ENST00000275036 MAP2P11137 1827 aaKnown RBP20■□□□□ 0.79
HMGN3-201ENST00000275036 ACSBG1Q96GR2 724 aa20■□□□□ 0.79
HMGN3-201ENST00000275036 ANKRD26Q9UPS8 1709 aa19.99■□□□□ 0.79
HMGN3-201ENST00000275036 ANO8Q9HCE9 1232 aaPredicted RBP19.99■□□□□ 0.79
HMGN3-201ENST00000275036 KAT6BQ8WYB5 2073 aa19.98■□□□□ 0.79
HMGN3-201ENST00000275036 BTAF1O14981 1849 aa19.98■□□□□ 0.79
HMGN3-201ENST00000275036 NBPF6Q5VWK0 638 aa19.98■□□□□ 0.79
HMGN3-201ENST00000275036 NBPF4Q96M43 638 aa19.98■□□□□ 0.79
HMGN3-201ENST00000275036 HSP90AB2PQ58FF8 381 aa19.97■□□□□ 0.79
HMGN3-201ENST00000275036 USHBP1Q8N6Y0 703 aa19.97■□□□□ 0.79
HMGN3-201ENST00000275036 EMILIN1Q9Y6C2 1016 aa19.97■□□□□ 0.79
HMGN3-201ENST00000275036 INSRP06213 1382 aa19.95■□□□□ 0.79
HMGN3-201ENST00000275036 FLT4P35916 1363 aa19.95■□□□□ 0.79
HMGN3-201ENST00000275036 NBPF14Q5TI25 921 aa19.95■□□□□ 0.78
HMGN3-201ENST00000275036 DOT1LQ8TEK3 1739 aa19.95■□□□□ 0.78
HMGN3-201ENST00000275036 CGNL1Q0VF96 1302 aa19.95■□□□□ 0.78
HMGN3-201ENST00000275036 CASZ1Q86V15 1759 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms