RNA–Protein interactions for RNA: ENST00000261963.11

MCF2L-201, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-201ENST00000261963 UBR1Q8IWV7 1749 aa28.61■■■□□ 2.17
MCF2L-201ENST00000261963 ALDH1L2Q3SY69 923 aa28.6■■■□□ 2.17
MCF2L-201ENST00000261963 ADAMTS13Q76LX8 1427 aa28.6■■■□□ 2.17
MCF2L-201ENST00000261963 COG3Q96JB2 828 aa28.6■■■□□ 2.17
MCF2L-201ENST00000261963 KIF16BQ96L93 1317 aa28.6■■■□□ 2.17
MCF2L-201ENST00000261963 TMEM57Q8N5G2 664 aa28.6■■■□□ 2.17
MCF2L-201ENST00000261963 THUMPD2Q9BTF0 503 aaKnown RBP28.59■■■□□ 2.17
MCF2L-201ENST00000261963 HDAC1Q13547 482 aaPredicted RBP28.58■■■□□ 2.17
MCF2L-201ENST00000261963 RRS1Q15050 365 aaKnown RBP28.58■■■□□ 2.17
MCF2L-201ENST00000261963 C3P01024 1663 aa28.58■■■□□ 2.16
MCF2L-201ENST00000261963 AKAP12Q02952 1782 aa28.57■■■□□ 2.16
MCF2L-201ENST00000261963 L1TD1Q5T7N2 865 aaKnown RBP28.57■■■□□ 2.16
MCF2L-201ENST00000261963 IPO8O15397 1037 aaKnown RBP28.56■■■□□ 2.16
MCF2L-201ENST00000261963 ZBTB40Q9NUA8 1239 aa28.55■■■□□ 2.16
MCF2L-201ENST00000261963 BRPF1P55201 1214 aaPredicted RBP28.54■■■□□ 2.16
MCF2L-201ENST00000261963 ZNF692Q9BU19 519 aaPredicted RBP28.54■■■□□ 2.16
MCF2L-201ENST00000261963 RRAGDQ9NQL2 400 aaPredicted RBP28.54■■■□□ 2.16
MCF2L-201ENST00000261963 ZNF428Q96B54 188 aa28.53■■■□□ 2.16
MCF2L-201ENST00000261963 ZNF853P0CG23 659 aa28.52■■■□□ 2.16
MCF2L-201ENST00000261963 LTKP29376 864 aa28.52■■■□□ 2.16
MCF2L-201ENST00000261963 IFT57Q9NWB7 429 aa28.52■■■□□ 2.16
MCF2L-201ENST00000261963 ITSN1Q15811 1721 aa28.52■■■□□ 2.16
MCF2L-201ENST00000261963 VAMP4O75379 141 aa28.51■■■□□ 2.15
MCF2L-201ENST00000261963 CALD1Q05682 793 aaKnown RBP28.51■■■□□ 2.15
MCF2L-201ENST00000261963 GLIPR1L2Q4G1C9 344 aa28.51■■■□□ 2.15
MCF2L-201ENST00000261963 PLEKHG1Q9ULL1 1385 aa28.5■■■□□ 2.15
MCF2L-201ENST00000261963 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.5■■■□□ 2.15
MCF2L-201ENST00000261963 TSPYL6Q8N831 410 aa28.5■■■□□ 2.15
MCF2L-201ENST00000261963 GNAI1P63096 354 aa28.49■■■□□ 2.15
MCF2L-201ENST00000261963 SMC5Q8IY18 1101 aa28.49■■■□□ 2.15
MCF2L-201ENST00000261963 BECN1Q14457 450 aa28.49■■■□□ 2.15
MCF2L-201ENST00000261963 MBIPQ9NS73 344 aa28.49■■■□□ 2.15
MCF2L-201ENST00000261963 MRPL50Q8N5N7 158 aaKnown RBP28.48■■■□□ 2.15
MCF2L-201ENST00000261963 TTC21BQ7Z4L5 1316 aa28.47■■■□□ 2.15
MCF2L-201ENST00000261963 NRKQ7Z2Y5 1582 aa28.45■■■□□ 2.15
MCF2L-201ENST00000261963 PKNOX2Q96KN3 472 aa28.45■■■□□ 2.14
MCF2L-201ENST00000261963 ACEP12821 1306 aa28.45■■■□□ 2.14
MCF2L-201ENST00000261963 TBC1D32Q96NH3 1257 aa28.44■■■□□ 2.14
MCF2L-201ENST00000261963 TOPAZ1Q8N9V7 1692 aa28.44■■■□□ 2.14
MCF2L-201ENST00000261963 PTPRUQ92729 1446 aa28.44■■■□□ 2.14
MCF2L-201ENST00000261963 PLEKHG3A1L390 1219 aa28.44■■■□□ 2.14
MCF2L-201ENST00000261963 PTCH1Q13635 1447 aa28.44■■■□□ 2.14
MCF2L-201ENST00000261963 LMOD3Q0VAK6 560 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 CFAP44Q96MT7 982 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 OVOS2A0A0J9YW53 1432 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 OVOS2Q6IE36 1432 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 FAM83GA6ND36 823 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 CEBPAP49715 358 aaPredicted RBP28.43■■■□□ 2.14
MCF2L-201ENST00000261963 PIK3R4Q99570 1358 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 DLG5Q8TDM6 1919 aa28.43■■■□□ 2.14
MCF2L-201ENST00000261963 ARHGAP45Q92619 1136 aa28.42■■■□□ 2.14
MCF2L-201ENST00000261963 EIF4A2Q14240 407 aaKnown RBP28.42■■■□□ 2.14
MCF2L-201ENST00000261963 NUTM2FA1L443 756 aa28.41■■■□□ 2.14
MCF2L-201ENST00000261963 ELL2O00472 640 aaPredicted RBP28.41■■■□□ 2.14
MCF2L-201ENST00000261963 AEBP1Q8IUX7 1158 aa28.41■■■□□ 2.14
MCF2L-201ENST00000261963 SLC26A8Q96RN1 970 aa28.4■■■□□ 2.14
MCF2L-201ENST00000261963 USP6P35125 1406 aa28.4■■■□□ 2.14
MCF2L-201ENST00000261963 C8orf58Q8NAV2 365 aa28.4■■■□□ 2.14
MCF2L-201ENST00000261963 UPF2Q9HAU5 1272 aaKnown RBP28.4■■■□□ 2.14
MCF2L-201ENST00000261963 TWISTNBQ3B726 338 aaPredicted RBP28.39■■■□□ 2.14
MCF2L-201ENST00000261963 SLKQ9H2G2 1235 aaPredicted RBP28.39■■■□□ 2.14
MCF2L-201ENST00000261963 ZBTB7BO15156 539 aaPredicted RBP28.39■■■□□ 2.13
MCF2L-201ENST00000261963 DCTN1Q14203 1278 aa28.39■■■□□ 2.13
MCF2L-201ENST00000261963 NUCB1Q02818 461 aa28.37■■■□□ 2.13
MCF2L-201ENST00000261963 ABCC4O15439 1325 aa28.36■■■□□ 2.13
MCF2L-201ENST00000261963 SULT6B1Q6IMI4 303 aa28.36■■■□□ 2.13
MCF2L-201ENST00000261963 SSH2Q76I76 1423 aa28.35■■■□□ 2.13
MCF2L-201ENST00000261963 USP31Q70CQ4 1352 aa28.35■■■□□ 2.13
MCF2L-201ENST00000261963 NAP1L5Q96NT1 182 aaPredicted RBP28.33■■■□□ 2.13
MCF2L-201ENST00000261963 PEAK1Q9H792 1746 aa28.33■■■□□ 2.13
MCF2L-201ENST00000261963 ANTXR1Q9H6X2 564 aa28.33■■■□□ 2.13
MCF2L-201ENST00000261963 EID1Q9Y6B2 187 aa28.33■■■□□ 2.13
MCF2L-201ENST00000261963 NALCNQ8IZF0 1738 aa28.33■■■□□ 2.13
MCF2L-201ENST00000261963 ARHGAP23Q9P227 1491 aa28.32■■■□□ 2.12
MCF2L-201ENST00000261963 HSP90AB2PQ58FF8 381 aa28.32■■■□□ 2.12
MCF2L-201ENST00000261963 AMOTL2Q9Y2J4 779 aa28.32■■■□□ 2.12
MCF2L-201ENST00000261963 SLIT1O75093 1534 aa28.32■■■□□ 2.12
MCF2L-201ENST00000261963 GOLGA6L3A6NEY3 463 aa28.31■■■□□ 2.12
MCF2L-201ENST00000261963 C1orf115Q9H7X2 142 aa28.3■■■□□ 2.12
MCF2L-201ENST00000261963 XRCC6P12956 609 aaKnown RBP eCLIP28.3■■■□□ 2.12
MCF2L-201ENST00000261963 LNPKQ9C0E8 428 aa28.3■■■□□ 2.12
MCF2L-201ENST00000261963 CLCN1P35523 988 aa28.29■■■□□ 2.12
MCF2L-201ENST00000261963 CHD1LQ86WJ1 897 aa28.29■■■□□ 2.12
MCF2L-201ENST00000261963 CHMP4BQ9H444 224 aaKnown RBP28.29■■■□□ 2.12
MCF2L-201ENST00000261963 TBX22Q9Y458 520 aa28.28■■■□□ 2.12
MCF2L-201ENST00000261963 TBC1D2Q9BYX2 928 aa28.28■■■□□ 2.12
MCF2L-201ENST00000261963 RGPD1P0DJD0 1748 aa28.28■■■□□ 2.12
MCF2L-201ENST00000261963 SIRT2Q8IXJ6 389 aa28.27■■■□□ 2.12
MCF2L-201ENST00000261963 MFAP1P55081 439 aaKnown RBP28.26■■■□□ 2.11
MCF2L-201ENST00000261963 API5Q9BZZ5 524 aaKnown RBP28.26■■■□□ 2.11
MCF2L-201ENST00000261963 FSD2A1L4K1 749 aa28.26■■■□□ 2.11
MCF2L-201ENST00000261963 HSP90AA1P07900 732 aaKnown RBP28.25■■■□□ 2.11
MCF2L-201ENST00000261963 C22orf23Q9BZE7 217 aa28.25■■■□□ 2.11
MCF2L-201ENST00000261963 CHL1O00533 1208 aa28.24■■■□□ 2.11
MCF2L-201ENST00000261963 SOX12O15370 315 aa28.24■■■□□ 2.11
MCF2L-201ENST00000261963 HSP90AA2PQ14568 343 aaPredicted RBP28.24■■■□□ 2.11
MCF2L-201ENST00000261963 MCM10Q7L590 875 aa28.24■■■□□ 2.11
MCF2L-201ENST00000261963 ARXQ96QS3 562 aa28.24■■■□□ 2.11
MCF2L-201ENST00000261963 TTC21AQ8NDW8 1320 aa28.24■■■□□ 2.11
MCF2L-201ENST00000261963 GCC1Q96CN9 775 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms