RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 SRRTQ9BXP5 876 aaKnown RBP13.1□□□□□ -0.31
MSH6-201ENST00000234420 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 KIF27Q86VH2 1401 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 ZPR1O75312 459 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 MRPS9P82933 396 aaKnown RBP13.1□□□□□ -0.31
MSH6-201ENST00000234420 EEA1Q15075 1411 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 SERPINC1P01008 464 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 SLC26A8Q96RN1 970 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 MPHOSPH8Q99549 860 aa13.1□□□□□ -0.31
MSH6-201ENST00000234420 UBXN4Q92575 508 aa13.09□□□□□ -0.31
MSH6-201ENST00000234420 DNAAF4Q8WXU2 420 aa13.09□□□□□ -0.31
MSH6-201ENST00000234420 TIGD1Q96MW7 591 aa13.09□□□□□ -0.31
MSH6-201ENST00000234420 KINO60870 393 aaKnown RBP13.09□□□□□ -0.31
MSH6-201ENST00000234420 ZNF408Q9H9D4 720 aa13.09□□□□□ -0.31
MSH6-201ENST00000234420 GBP2P32456 591 aaPredicted RBP13.09□□□□□ -0.31
MSH6-201ENST00000234420 SPATA24Q86W54 205 aa13.08□□□□□ -0.31
MSH6-201ENST00000234420 FKBP4Q02790 459 aaKnown RBP eCLIP13.08□□□□□ -0.32
MSH6-201ENST00000234420 XBP1P17861 261 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 CRACR2AQ9BSW2 395 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 CUX2O14529 1486 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 MBD3O95983 291 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 ERC1Q8IUD2 1116 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 CCDC113Q9H0I3 377 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 PPP4R3BQ5MIZ7 849 aa13.08□□□□□ -0.32
MSH6-201ENST00000234420 CRACR2BQ8N4Y2 399 aaPredicted RBP13.07□□□□□ -0.32
MSH6-201ENST00000234420 MAGEC2Q9UBF1 373 aaPredicted RBP13.07□□□□□ -0.32
MSH6-201ENST00000234420 STK3Q13188 491 aa13.07□□□□□ -0.32
MSH6-201ENST00000234420 RAD54L2Q9Y4B4 1467 aa13.07□□□□□ -0.32
MSH6-201ENST00000234420 MYO15BQ96JP2 1530 aa13.07□□□□□ -0.32
MSH6-201ENST00000234420 FIBPO43427 364 aa13.07□□□□□ -0.32
MSH6-201ENST00000234420 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
MSH6-201ENST00000234420 RIPK4P57078 832 aa13.06□□□□□ -0.32
MSH6-201ENST00000234420 ZNHIT6Q9NWK9 470 aaKnown RBP13.06□□□□□ -0.32
MSH6-201ENST00000234420 TDO2P48775 406 aa13.06□□□□□ -0.32
MSH6-201ENST00000234420 CEP162Q5TB80 1403 aa13.06□□□□□ -0.32
MSH6-201ENST00000234420 CABP2Q9NPB3 220 aa13.06□□□□□ -0.32
MSH6-201ENST00000234420 RBM26Q5T8P6 1007 aaKnown RBP13.06□□□□□ -0.32
MSH6-201ENST00000234420 INTS3Q68E01 1043 aaKnown RBP13.06□□□□□ -0.32
MSH6-201ENST00000234420 PPFIBP1Q86W92 1011 aa13.06□□□□□ -0.32
MSH6-201ENST00000234420 HOMER2Q9NSB8 354 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 ANAPC15P60006 121 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 TMOD2Q9NZR1 351 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 EVC2Q86UK5 1308 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 MICALCLQ6ZW33 695 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 GNL3LQ9NVN8 582 aaKnown RBP13.05□□□□□ -0.32
MSH6-201ENST00000234420 TRIM21P19474 475 aaKnown RBP13.05□□□□□ -0.32
MSH6-201ENST00000234420 PLS1Q14651 629 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 ZKSCAN2Q63HK3 967 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 SERPINA10Q9UK55 444 aa13.05□□□□□ -0.32
MSH6-201ENST00000234420 GOLGA3Q08378 1498 aa13.04□□□□□ -0.32
MSH6-201ENST00000234420 CECR2Q9BXF3 1484 aa13.04□□□□□ -0.32
MSH6-201ENST00000234420 ZC3H6P61129 1189 aaKnown RBP13.04□□□□□ -0.32
MSH6-201ENST00000234420 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.04□□□□□ -0.32
MSH6-201ENST00000234420 LNPKQ9C0E8 428 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 CCDC192P0DO97 292 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 ABCF2Q9UG63 623 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 FAM107BQ9H098 131 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 CCDC160A6NGH7 325 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 FILIP1Q7Z7B0 1213 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 GPRASP1Q5JY77 1395 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 CFAP65Q6ZU64 1925 aaKnown RBP13.03□□□□□ -0.32
MSH6-201ENST00000234420 LMAN1P49257 510 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 TXNDC2Q86VQ3 553 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 ZSCAN30Q86W11 494 aa13.03□□□□□ -0.32
MSH6-201ENST00000234420 PANK3Q9H999 370 aa13.02□□□□□ -0.32
MSH6-201ENST00000234420 UBE4AQ14139 1066 aa13.02□□□□□ -0.32
MSH6-201ENST00000234420 CCDC91Q7Z6B0 441 aa13.02□□□□□ -0.32
MSH6-201ENST00000234420 DHX8Q14562 1220 aaKnown RBP13.02□□□□□ -0.33
MSH6-201ENST00000234420 RPGRQ92834 1020 aaKnown RBP13.02□□□□□ -0.33
MSH6-201ENST00000234420 FSD1Q9BTV5 496 aa13.02□□□□□ -0.33
MSH6-201ENST00000234420 GRIPAP1Q4V328 841 aa13.02□□□□□ -0.33
MSH6-201ENST00000234420 IQCEQ6IPM2 695 aa13.02□□□□□ -0.33
MSH6-201ENST00000234420 RAI14Q9P0K7 980 aa13.02□□□□□ -0.33
MSH6-201ENST00000234420 UBA5Q9GZZ9 404 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 SETD1BQ9UPS6 1966 aaKnown RBP13.01□□□□□ -0.33
MSH6-201ENST00000234420 TDRD9Q8NDG6 1382 aaKnown RBP13.01□□□□□ -0.33
MSH6-201ENST00000234420 TMEM132EQ6IEE7 984 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 BEGAINQ9BUH8 593 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 ARHGAP35Q9NRY4 1499 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 ATP2B3Q16720 1220 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 MPRIPQ6WCQ1 1025 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 WRNQ14191 1432 aaPredicted RBP eCLIP13.01□□□□□ -0.33
MSH6-201ENST00000234420 TATP17735 454 aaPredicted RBP13.01□□□□□ -0.33
MSH6-201ENST00000234420 DAAM2Q86T65 1068 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 MPHOSPH9Q99550 1183 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 TNMDQ9H2S6 317 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 CCDC69A6NI79 296 aa13.01□□□□□ -0.33
MSH6-201ENST00000234420 PTCD1O75127 700 aaKnown RBP13□□□□□ -0.33
MSH6-201ENST00000234420 SEPT6Q14141 434 aa13□□□□□ -0.33
MSH6-201ENST00000234420 SOGA3Q5TF21 947 aa13□□□□□ -0.33
MSH6-201ENST00000234420 NLRP13Q86W25 1043 aa13□□□□□ -0.33
MSH6-201ENST00000234420 PPM1EQ8WY54 764 aa13□□□□□ -0.33
MSH6-201ENST00000234420 ARID4AP29374 1257 aaPredicted RBP13□□□□□ -0.33
MSH6-201ENST00000234420 LRSAM1Q6UWE0 723 aa13□□□□□ -0.33
MSH6-201ENST00000234420 CFAP57Q96MR6 1250 aa13□□□□□ -0.33
MSH6-201ENST00000234420 LRP2BPQ9P2M1 347 aa13□□□□□ -0.33
MSH6-201ENST00000234420 ATP2C2O75185 946 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 POLR3DP05423 398 aaPredicted RBP12.99□□□□□ -0.33
MSH6-201ENST00000234420 NUTM1Q86Y26 1132 aa12.99□□□□□ -0.33
MSH6-201ENST00000234420 ST20-MTHFSA0A0A6YYL1 179 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms