RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CHD1LQ86WJ1 897 aa17.8■□□□□ 0.44
PTPRA-201ENST00000216877 HCLS1P14317 486 aaPredicted RBP17.8■□□□□ 0.44
PTPRA-201ENST00000216877 RNF17Q9BXT8 1623 aaKnown RBP17.8■□□□□ 0.44
PTPRA-201ENST00000216877 DDX19BQ9UMR2 479 aa17.8■□□□□ 0.44
PTPRA-201ENST00000216877 ANKRD30AQ9BXX3 1397 aa17.79■□□□□ 0.44
PTPRA-201ENST00000216877 ST18O60284 1047 aa17.79■□□□□ 0.44
PTPRA-201ENST00000216877 MBD3O95983 291 aa17.78■□□□□ 0.44
PTPRA-201ENST00000216877 APPP05067 770 aa17.78■□□□□ 0.44
PTPRA-201ENST00000216877 TESK2Q96S53 571 aa17.77■□□□□ 0.44
PTPRA-201ENST00000216877 IBTKQ9P2D0 1353 aaPredicted RBP17.77■□□□□ 0.44
PTPRA-201ENST00000216877 NUTM2DQ5VT03 806 aaPredicted RBP17.77■□□□□ 0.44
PTPRA-201ENST00000216877 KIF2CQ99661 725 aa17.77■□□□□ 0.43
PTPRA-201ENST00000216877 FEZ1Q99689 392 aa17.77■□□□□ 0.43
PTPRA-201ENST00000216877 TMEM57Q8N5G2 664 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 SECISBP2LQ93073 1101 aaKnown RBP17.76■□□□□ 0.43
PTPRA-201ENST00000216877 RALGAPBQ86X10 1494 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 CEP152O94986 1710 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 GLI2P10070 1586 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 NINLQ9Y2I6 1382 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 CHMP3Q9Y3E7 222 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 CALCOCO1Q9P1Z2 691 aa17.76■□□□□ 0.43
PTPRA-201ENST00000216877 KIF3BO15066 747 aa17.75■□□□□ 0.43
PTPRA-201ENST00000216877 U2AF1L5P0DN76 240 aaPredicted RBP17.75■□□□□ 0.43
PTPRA-201ENST00000216877 TRIM27P14373 513 aa17.75■□□□□ 0.43
PTPRA-201ENST00000216877 U2AF1Q01081 240 aaKnown RBP eCLIP17.75■□□□□ 0.437e-6■■■■□ 20
PTPRA-201ENST00000216877 EFCAB2Q5VUJ9 269 aa17.75■□□□□ 0.43
PTPRA-201ENST00000216877 RTF1Q92541 710 aaKnown RBP17.75■□□□□ 0.43
PTPRA-201ENST00000216877 NOB1Q9ULX3 412 aaKnown RBP17.75■□□□□ 0.43
PTPRA-201ENST00000216877 PHF14O94880 888 aa17.75■□□□□ 0.43
PTPRA-201ENST00000216877 GTF2F1P35269 517 aaKnown RBP eCLIP17.75■□□□□ 0.43
PTPRA-201ENST00000216877 RABEP1Q15276 862 aa17.75■□□□□ 0.43
PTPRA-201ENST00000216877 PLCH2O75038 1416 aa17.75■□□□□ 0.43
PTPRA-201ENST00000216877 EXOSC9Q06265 439 aaKnown RBP17.75■□□□□ 0.43
PTPRA-201ENST00000216877 WDR7Q9Y4E6 1490 aa17.74■□□□□ 0.43
PTPRA-201ENST00000216877 RTEL1-TNFRSF6BF6WH68 1400 aa17.74■□□□□ 0.43
PTPRA-201ENST00000216877 PYCARDQ9ULZ3 195 aa17.74■□□□□ 0.43
PTPRA-201ENST00000216877 NEURL4Q96JN8 1562 aa17.73■□□□□ 0.43
PTPRA-201ENST00000216877 SRPK2P78362 688 aaKnown RBP17.73■□□□□ 0.43
PTPRA-201ENST00000216877 SAFB2Q14151 953 aaKnown RBP eCLIP17.73■□□□□ 0.43
PTPRA-201ENST00000216877 MORC1Q86VD1 984 aa17.73■□□□□ 0.43
PTPRA-201ENST00000216877 ERBINQ96RT1 1412 aa17.73■□□□□ 0.43
PTPRA-201ENST00000216877 FKBP5Q13451 457 aaPredicted RBP17.73■□□□□ 0.43
PTPRA-201ENST00000216877 CDC45O75419 566 aa17.72■□□□□ 0.43
PTPRA-201ENST00000216877 GABPB1Q06547 395 aaPredicted RBP17.72■□□□□ 0.43
PTPRA-201ENST00000216877 KLHL34Q8N239 644 aa17.72■□□□□ 0.43
PTPRA-201ENST00000216877 CCDC112Q8NEF3 446 aa17.72■□□□□ 0.43
PTPRA-201ENST00000216877 RSPH4AQ5TD94 716 aa17.72■□□□□ 0.43
PTPRA-201ENST00000216877 PLA2R1Q13018 1463 aa17.71■□□□□ 0.43
PTPRA-201ENST00000216877 KRT222Q8N1A0 295 aa17.71■□□□□ 0.43
PTPRA-201ENST00000216877 NEK4P51957 841 aa17.71■□□□□ 0.43
PTPRA-201ENST00000216877 CDCA8Q53HL2 280 aa17.71■□□□□ 0.43
PTPRA-201ENST00000216877 AFAP1Q8N556 730 aa17.71■□□□□ 0.43
PTPRA-201ENST00000216877 PRDM15P57071 1507 aaPredicted RBP17.71■□□□□ 0.43
PTPRA-201ENST00000216877 DHX37Q8IY37 1157 aaKnown RBP17.71■□□□□ 0.43
PTPRA-201ENST00000216877 AK9Q5TCS8 1911 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 SLFN14P0C7P3 912 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 OSCARQ8IYS5 282 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 SSH1Q8WYL5 1049 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 NCOA3Q9Y6Q9 1424 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 GOLGA6L6A8MZA4 724 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 BMP2KLQ5H9B9 411 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 RUNDC1Q96C34 613 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 CWC22Q9HCG8 908 aaKnown RBP17.7■□□□□ 0.42
PTPRA-201ENST00000216877 ST7Q9NRC1 585 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 ATP10AO60312 1499 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 CCDC141Q6ZP82 1450 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 GADD45BO75293 160 aaPredicted RBP17.7■□□□□ 0.42
PTPRA-201ENST00000216877 LAMC1P11047 1609 aa17.7■□□□□ 0.42
PTPRA-201ENST00000216877 TRPM1Q7Z4N2 1603 aa17.69■□□□□ 0.42
PTPRA-201ENST00000216877 ELL2O00472 640 aaPredicted RBP17.69■□□□□ 0.42
PTPRA-201ENST00000216877 NUCB1Q02818 461 aa17.69■□□□□ 0.42
PTPRA-201ENST00000216877 TPD52L1Q16890 204 aaPredicted RBP17.69■□□□□ 0.42
PTPRA-201ENST00000216877 ATF7IPQ6VMQ6 1270 aa17.69■□□□□ 0.42
PTPRA-201ENST00000216877 ABCA6Q8N139 1617 aa17.69■□□□□ 0.42
PTPRA-201ENST00000216877 TNNT1P13805 278 aa17.69■□□□□ 0.42
PTPRA-201ENST00000216877 TERF2Q15554 542 aa17.69■□□□□ 0.42
PTPRA-201ENST00000216877 SMARCA5O60264 1052 aaPredicted RBP17.69■□□□□ 0.42
PTPRA-201ENST00000216877 NCBP1Q09161 790 aaKnown RBP17.69■□□□□ 0.42
PTPRA-201ENST00000216877 HDAC1Q13547 482 aaPredicted RBP17.69■□□□□ 0.42
PTPRA-201ENST00000216877 SPHKAPQ2M3C7 1700 aa17.68■□□□□ 0.42
PTPRA-201ENST00000216877 TRHP20396 242 aaPredicted RBP17.68■□□□□ 0.42
PTPRA-201ENST00000216877 TOMM22Q9NS69 142 aa17.68■□□□□ 0.42
PTPRA-201ENST00000216877 POLR3GO15318 223 aaPredicted RBP17.67■□□□□ 0.42
PTPRA-201ENST00000216877 CASC1Q6TDU7 716 aa17.67■□□□□ 0.42
PTPRA-201ENST00000216877 CCDC27Q2M243 656 aa17.67■□□□□ 0.42
PTPRA-201ENST00000216877 C9orf84Q5VXU9 1444 aa17.66■□□□□ 0.42
PTPRA-201ENST00000216877 CTNNA3Q9UI47 895 aa17.66■□□□□ 0.42
PTPRA-201ENST00000216877 DIP2BQ9P265 1576 aa17.66■□□□□ 0.42
PTPRA-201ENST00000216877 FAM135AQ9P2D6 1515 aa17.66■□□□□ 0.42
PTPRA-201ENST00000216877 CFAP74Q9C0B2 1584 aa17.66■□□□□ 0.42
PTPRA-201ENST00000216877 PTGS1P23219 599 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 GIMAP6Q6P9H5 292 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 GTF3C6Q969F1 213 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 RSPH14Q9UHP6 348 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 IPO8O15397 1037 aaKnown RBP17.65■□□□□ 0.42
PTPRA-201ENST00000216877 FIBPO43427 364 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 CAPN2P17655 700 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 INSRP06213 1382 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 ANKRD50Q9ULJ7 1429 aa17.65■□□□□ 0.42
PTPRA-201ENST00000216877 C10orf67Q8IYJ2 551 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms