RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 TESK2Q96S53 571 aa31.35■■■□□ 2.61
VTI1B-201ENST00000216456 RGPD5Q99666 1765 aa31.33■■■□□ 2.61
VTI1B-201ENST00000216456 KCNH5Q8NCM2 988 aa31.33■■■□□ 2.61
VTI1B-201ENST00000216456 APBA3O96018 575 aa31.32■■■□□ 2.6
VTI1B-201ENST00000216456 DISP2A7MBM2 1401 aa31.32■■■□□ 2.6
VTI1B-201ENST00000216456 WDR17Q8IZU2 1322 aa31.31■■■□□ 2.6
VTI1B-201ENST00000216456 CAMKK2Q96RR4 588 aa31.31■■■□□ 2.6
VTI1B-201ENST00000216456 PARP4Q9UKK3 1724 aaKnown RBP31.31■■■□□ 2.6
VTI1B-201ENST00000216456 A0A1W2PP64 1363 aa31.3■■■□□ 2.6
VTI1B-201ENST00000216456 HDGFL2Q7Z4V5 671 aaPredicted RBP31.28■■■□□ 2.6
VTI1B-201ENST00000216456 USP31Q70CQ4 1352 aa31.28■■■□□ 2.6
VTI1B-201ENST00000216456 LRRC37A3O60309 1634 aa31.27■■■□□ 2.6
VTI1B-201ENST00000216456 CSB-PGBD3P0DP91 1061 aa31.27■■■□□ 2.6
VTI1B-201ENST00000216456 R3HDM1Q15032 1099 aaKnown RBP31.27■■■□□ 2.6
VTI1B-201ENST00000216456 PTF1AQ7RTS3 328 aa31.25■■■□□ 2.59
VTI1B-201ENST00000216456 DDB1Q16531 1140 aa31.24■■■□□ 2.59
VTI1B-201ENST00000216456 EDC4Q6P2E9 1401 aaKnown RBP31.24■■■□□ 2.59
VTI1B-201ENST00000216456 PEAK1Q9H792 1746 aa31.22■■■□□ 2.59
VTI1B-201ENST00000216456 TERF2IPQ9NYB0 399 aa31.22■■■□□ 2.59
VTI1B-201ENST00000216456 MARCH10Q8NA82 808 aaPredicted RBP31.21■■■□□ 2.59
VTI1B-201ENST00000216456 CARD10Q9BWT7 1032 aa31.21■■■□□ 2.59
VTI1B-201ENST00000216456 USP54Q70EL1 1684 aa31.2■■■□□ 2.59
VTI1B-201ENST00000216456 WNK3Q9BYP7 1800 aa31.2■■■□□ 2.59
VTI1B-201ENST00000216456 PUS7Q96PZ0 661 aaKnown RBP31.19■■■□□ 2.58
VTI1B-201ENST00000216456 OVOS2A0A0G2JMS6 1433 aa31.18■■■□□ 2.58
VTI1B-201ENST00000216456 OVOS2A0A0J9YW53 1432 aa31.18■■■□□ 2.58
VTI1B-201ENST00000216456 OVOS2Q6IE36 1432 aa31.18■■■□□ 2.58
VTI1B-201ENST00000216456 USP47Q96K76 1375 aa31.17■■■□□ 2.58
VTI1B-201ENST00000216456 FBLN1P23142 703 aa31.17■■■□□ 2.58
VTI1B-201ENST00000216456 PCGF6Q9BYE7 350 aa31.17■■■□□ 2.58
VTI1B-201ENST00000216456 LTN1O94822 1766 aa31.15■■■□□ 2.58
VTI1B-201ENST00000216456 ERBB3P21860 1342 aa31.14■■■□□ 2.58
VTI1B-201ENST00000216456 RREB1Q92766 1687 aa31.13■■■□□ 2.57
VTI1B-201ENST00000216456 NLRP2Q9NX02 1062 aa31.13■■■□□ 2.57
VTI1B-201ENST00000216456 NUP188Q5SRE5 1749 aa31.12■■■□□ 2.57
VTI1B-201ENST00000216456 LRP5O75197 1615 aa31.11■■■□□ 2.57
VTI1B-201ENST00000216456 ABCC6O95255 1503 aa31.11■■■□□ 2.57
VTI1B-201ENST00000216456 ANKRD24Q8TF21 1146 aa31.11■■■□□ 2.57
VTI1B-201ENST00000216456 PARD3Q8TEW0 1356 aa31.1■■■□□ 2.57
VTI1B-201ENST00000216456 SBF2Q86WG5 1849 aa31.1■■■□□ 2.57
VTI1B-201ENST00000216456 CCDC7Q96M83 1385 aa31.09■■■□□ 2.57
VTI1B-201ENST00000216456 CDCA7Q9BWT1 371 aaPredicted RBP31.09■■■□□ 2.57
VTI1B-201ENST00000216456 NINLQ9Y2I6 1382 aa31.07■■■□□ 2.56
VTI1B-201ENST00000216456 EXOC5O00471 708 aa31.07■■■□□ 2.56
VTI1B-201ENST00000216456 LTV1Q96GA3 475 aaPredicted RBP31.07■■■□□ 2.56
VTI1B-201ENST00000216456 TMF1P82094 1093 aa31.06■■■□□ 2.56
VTI1B-201ENST00000216456 ANKRD36BQ8N2N9 1353 aa31.05■■■□□ 2.56
VTI1B-201ENST00000216456 BCL11BQ9C0K0 894 aaPredicted RBP31.04■■■□□ 2.56
VTI1B-201ENST00000216456 COG3Q96JB2 828 aa31.03■■■□□ 2.56
VTI1B-201ENST00000216456 TNS2Q63HR2 1409 aa31.03■■■□□ 2.56
VTI1B-201ENST00000216456 MAP3K19Q56UN5 1328 aa31.02■■■□□ 2.56
VTI1B-201ENST00000216456 C11orf95C9JLR9 678 aaPredicted RBP31.02■■■□□ 2.56
VTI1B-201ENST00000216456 KCNQ2O43526 872 aa31.02■■■□□ 2.56
VTI1B-201ENST00000216456 IP6K1Q92551 441 aa31.02■■■□□ 2.56
VTI1B-201ENST00000216456 GGNBP2Q9H3C7 697 aa31.02■■■□□ 2.56
VTI1B-201ENST00000216456 PROM2Q8N271 834 aa31.01■■■□□ 2.55
VTI1B-201ENST00000216456 IL2RBP14784 551 aa31■■■□□ 2.55
VTI1B-201ENST00000216456 ACSBG1Q96GR2 724 aa31■■■□□ 2.55
VTI1B-201ENST00000216456 ANO8Q9HCE9 1232 aaPredicted RBP31■■■□□ 2.55
VTI1B-201ENST00000216456 BCL9O00512 1426 aa30.99■■■□□ 2.55
VTI1B-201ENST00000216456 FYB1O15117 783 aa30.98■■■□□ 2.55
VTI1B-201ENST00000216456 PLSCR1O15162 318 aa30.98■■■□□ 2.55
VTI1B-201ENST00000216456 SLC24A1O60721 1099 aa30.98■■■□□ 2.55
VTI1B-201ENST00000216456 RRS1Q15050 365 aaKnown RBP30.98■■■□□ 2.55
VTI1B-201ENST00000216456 NBPF14Q5TI25 921 aa30.98■■■□□ 2.55
VTI1B-201ENST00000216456 HOXC9P31274 260 aa30.97■■■□□ 2.55
VTI1B-201ENST00000216456 AMPHP49418 695 aa30.94■■■□□ 2.54
VTI1B-201ENST00000216456 CARD14Q9BXL6 1004 aa30.93■■■□□ 2.54
VTI1B-201ENST00000216456 PDGFDQ9GZP0 370 aaPredicted RBP30.92■■■□□ 2.54
VTI1B-201ENST00000216456 RGPD3A6NKT7 1758 aaPredicted RBP30.91■■■□□ 2.54
VTI1B-201ENST00000216456 RGPD4Q7Z3J3 1758 aa30.91■■■□□ 2.54
VTI1B-201ENST00000216456 TIMELESSQ9UNS1 1208 aa30.9■■■□□ 2.54
VTI1B-201ENST00000216456 MYOM1P52179 1685 aa30.9■■■□□ 2.54
VTI1B-201ENST00000216456 TXNRD1Q16881 649 aa30.89■■■□□ 2.54
VTI1B-201ENST00000216456 RGPD2P0DJD1 1756 aa30.89■■■□□ 2.54
VTI1B-201ENST00000216456 DDX54Q8TDD1 881 aaKnown RBP30.88■■■□□ 2.53
VTI1B-201ENST00000216456 CLSPNQ9HAW4 1339 aa30.88■■■□□ 2.53
VTI1B-201ENST00000216456 NHSQ6T4R5 1651 aa30.87■■■□□ 2.53
VTI1B-201ENST00000216456 CDCA8Q53HL2 280 aa30.86■■■□□ 2.53
VTI1B-201ENST00000216456 USHBP1Q8N6Y0 703 aa30.86■■■□□ 2.53
VTI1B-201ENST00000216456 FAM208AQ9UK61 1670 aaKnown RBP30.86■■■□□ 2.53
VTI1B-201ENST00000216456 NSD3Q9BZ95 1437 aa30.85■■■□□ 2.53
VTI1B-201ENST00000216456 NBPF6Q5VWK0 638 aa30.84■■■□□ 2.53
VTI1B-201ENST00000216456 NBPF4Q96M43 638 aa30.84■■■□□ 2.53
VTI1B-201ENST00000216456 POLR3GLQ9BT43 218 aa30.83■■■□□ 2.53
VTI1B-201ENST00000216456 MEGF6O75095 1541 aa30.83■■■□□ 2.53
VTI1B-201ENST00000216456 HSP90AB2PQ58FF8 381 aa30.82■■■□□ 2.52
VTI1B-201ENST00000216456 KIF20BQ96Q89 1820 aa30.82■■■□□ 2.52
VTI1B-201ENST00000216456 CCER1Q8TC90 406 aaPredicted RBP30.81■■■□□ 2.52
VTI1B-201ENST00000216456 RTL1A6NKG5 1358 aa30.79■■■□□ 2.52
VTI1B-201ENST00000216456 BTAF1O14981 1849 aa30.78■■■□□ 2.52
VTI1B-201ENST00000216456 EMILIN1Q9Y6C2 1016 aa30.78■■■□□ 2.52
VTI1B-201ENST00000216456 SPON1Q9HCB6 807 aa30.77■■■□□ 2.52
VTI1B-201ENST00000216456 CASZ1Q86V15 1759 aa30.77■■■□□ 2.52
VTI1B-201ENST00000216456 ZBTB7AO95365 584 aa30.76■■■□□ 2.51
VTI1B-201ENST00000216456 KAT6BQ8WYB5 2073 aa30.75■■■□□ 2.51
VTI1B-201ENST00000216456 HSPA5P11021 654 aaKnown RBP30.75■■■□□ 2.51
VTI1B-201ENST00000216456 STK32BQ9NY57 414 aa30.75■■■□□ 2.51
VTI1B-201ENST00000216456 SHANK3Q9BYB0 1731 aa30.75■■■□□ 2.51
VTI1B-201ENST00000216456 SLC15A2Q16348 729 aa30.74■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms