RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Limch1Q3UH68 1057 aa10.68□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Morc2bQ8C5W4 1022 aa10.68□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Nup133Q8R0G9 1155 aa10.68□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Irak4Q8R4K2 459 aa10.68□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Bsdc1Q80Y55 427 aa10.68□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Dars2Q8BIP0 653 aa10.68□□□□□ -0.7
Clcn3-202ENSMUST00000056508 XpcP51612 930 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Gtf2a1Q99PM3 378 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Ca8P28651 291 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 DgkiD3YWQ0 1071 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Akap8Q9DBR0 687 aaKnown RBP10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Exosc9Q9JHI7 438 aaKnown RBP10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Tmf1B9EKI3 1091 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Speer4aF8VPX6 267 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Rrp12Q6P5B0 1295 aaKnown RBP10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Frmd3Q8BHD4 595 aa10.67□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Ap1g2O88512 791 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Tmed1Q3V009 227 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Cog6Q8R3I3 657 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Lrrc46Q9DAP0 323 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Tfip11Q9ERA6 838 aaKnown RBP10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 PbsnO08976 174 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 PrlrQ08501 608 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Btn2a2A4QPC6 514 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Gbp7Q91Z40 638 aa10.66□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Smarce1O54941 411 aaKnown RBP10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 ClgnP52194 611 aa10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Sf3b2Q3UJB0 878 aaKnown RBP10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Q922C1 641 aa10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Ctnnbl1Q9CWL8 563 aaKnown RBP10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Psma4Q9R1P0 261 aa10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Synpo2Q91YE8 1087 aaKnown RBP10.65□□□□□ -0.7
Clcn3-202ENSMUST00000056508 Ccng2O08918 344 aa10.65□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Nub1P54729 614 aa10.65□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Htatsf1Q8BGC0 757 aa10.65□□□□□ -0.71
Clcn3-202ENSMUST00000056508 UstQ8BUB6 407 aa10.65□□□□□ -0.71
Clcn3-202ENSMUST00000056508 CgnP59242 1191 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 MarsQ68FL6 902 aaKnown RBP10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Dnajc6Q80TZ3 938 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Fam184bQ0KK56 942 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Zrsr1Q64707 428 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Ppfibp2O35711 882 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Ctr9Q62018 1173 aaKnown RBP10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Maco1Q7TQE6 664 aaKnown RBP10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Rnaseh2aQ9CWY8 301 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Trim55G3X8Y1 545 aa10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Smc3Q9CW03 1217 aaKnown RBP10.64□□□□□ -0.71
Clcn3-202ENSMUST00000056508 ArsiQ32KI9 573 aa10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Sf3b3Q921M3 1217 aaKnown RBP10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Mad1l1Q9WTX8 717 aaKnown RBP10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Tab3Q571K4 716 aa10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Tor1aip2Q8BYU6 502 aa10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 SkiQ60698 725 aa10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 MrrfQ9D6S7 262 aaKnown RBP10.63□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Rps6kc1Q8BLK9 1056 aa10.62□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Top1Q04750 767 aaKnown RBP10.62□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Kif5bQ61768 963 aa10.62□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Tmx4Q8C0L0 335 aa10.62□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Hspa5P20029 655 aaKnown RBP10.62□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Chaf1aQ9QWF0 911 aa10.62□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Naaladl2A0A0N4SUJ3 795 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Pmm1O35621 262 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Ppp1r21Q3TDD9 780 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Fez2Q6TYB5 348 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Gm21698A0A087WQP8 267 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Gabpb2P81069 414 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Rufy1Q8BIJ7 712 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Dhx8A2A4P0 1244 aaKnown RBP10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Rbm20Q3UQS8 1199 aaKnown RBP10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Tspyl2Q7TQI8 677 aa10.61□□□□□ -0.71
Clcn3-202ENSMUST00000056508 TrdnE9Q9K5 693 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Trim17Q7TPM3 477 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Ddx41Q91VN6 622 aaKnown RBP10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Smim23Q9DAL0 136 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Gripap1Q8VD04 806 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Tceal9Q9DD24 104 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Igflr1Q3U4N7 345 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Psmc1P62192 440 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Skor1Q8BX46 964 aa10.6□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Gm21663A0A0G2JE01 267 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Cfap58B2RW38 873 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 5031410I06RikE9Q4E0 267 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Gm5862K7N5V5 267 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Gm10220K7N660 267 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Dhx37Q6NZL1 1150 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Plin1Q8CGN5 517 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Matr3Q8K310 846 aaKnown RBP10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 IydQ9DCX8 285 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Fbxw10Q5SUS0 1030 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Cetn4Q8K4K1 168 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Ttll3A4Q9E5 927 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 MsnP26041 577 aaKnown RBP10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Ell2Q3UKU1 639 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Znf76Q8BMU0 568 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Trim8Q99PJ2 551 aa10.59□□□□□ -0.71
Clcn3-202ENSMUST00000056508 Vti1bO88384 232 aa10.58□□□□□ -0.72
Clcn3-202ENSMUST00000056508 Tmtc2Q56A06 836 aa10.58□□□□□ -0.72
Clcn3-202ENSMUST00000056508 Soga3Q6NZL0 945 aa10.58□□□□□ -0.72
Clcn3-202ENSMUST00000056508 Cand2Q6ZQ73 1235 aa10.58□□□□□ -0.72
Clcn3-202ENSMUST00000056508 Ankrd40Q5SUE8 363 aa10.58□□□□□ -0.72
Retrieved 100 of 22,080 RNA–protein pairs in 22.9 ms