RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Swt1Q9DBQ9 907 aa20.19■□□□□ 0.82
Trim28-201ENSMUST00000005705 Psme1P97371 249 aa20.19■□□□□ 0.82
Trim28-201ENSMUST00000005705 Ahdc1Q6PAL7 1594 aaKnown RBP20.19■□□□□ 0.82
Trim28-201ENSMUST00000005705 KdrP35918 1367 aa20.18■□□□□ 0.82
Trim28-201ENSMUST00000005705 Iqsec2Q5DU25 1478 aa20.18■□□□□ 0.82
Trim28-201ENSMUST00000005705 SkilQ60665 675 aa20.17■□□□□ 0.82
Trim28-201ENSMUST00000005705 PtprmP28828 1452 aa20.17■□□□□ 0.82
Trim28-201ENSMUST00000005705 Ric3Q8BPM6 367 aa20.17■□□□□ 0.82
Trim28-201ENSMUST00000005705 Adgrl3Q80TS3 1537 aa20.16■□□□□ 0.82
Trim28-201ENSMUST00000005705 Qser1A2BIE1 1698 aa20.16■□□□□ 0.82
Trim28-201ENSMUST00000005705 Arhgap23Q69ZH9 1483 aa20.15■□□□□ 0.82
Trim28-201ENSMUST00000005705 Fam135bQ9DAI6 1403 aa20.15■□□□□ 0.82
Trim28-201ENSMUST00000005705 Ift172Q6VH22 1749 aa20.15■□□□□ 0.82
Trim28-201ENSMUST00000005705 Ttc37F8VPK0 1563 aa20.14■□□□□ 0.81
Trim28-201ENSMUST00000005705 Rrp9Q91WM3 475 aaKnown RBP20.14■□□□□ 0.81
Trim28-201ENSMUST00000005705 Eif2ak4Q9QZ05 1648 aa20.14■□□□□ 0.81
Trim28-201ENSMUST00000005705 Larp1bA0A0A6YXJ7 370 aaKnown RBP20.14■□□□□ 0.81
Trim28-201ENSMUST00000005705 KnstrnQ9D9Z1 312 aaKnown RBP20.14■□□□□ 0.81
Trim28-201ENSMUST00000005705 Kiaa0556Q8C753 1610 aa20.13■□□□□ 0.81
Trim28-201ENSMUST00000005705 FanclQ9CR14 375 aa20.13■□□□□ 0.81
Trim28-201ENSMUST00000005705 Nol12Q8BG17 217 aa20.12■□□□□ 0.81
Trim28-201ENSMUST00000005705 Nrxn1Q9CS84 1514 aa20.12■□□□□ 0.81
Trim28-201ENSMUST00000005705 Erich6bQ9D4S6 220 aa20.12■□□□□ 0.81
Trim28-201ENSMUST00000005705 HnrnpmQ9D0E1 729 aaKnown RBP20.11■□□□□ 0.81
Trim28-201ENSMUST00000005705 Rsph3aQ3UFY4 516 aa20.1■□□□□ 0.81
Trim28-201ENSMUST00000005705 Tbc1d9Q3UYK3 1264 aa20.1■□□□□ 0.81
Trim28-201ENSMUST00000005705 Adamts7Q68SA9 1657 aa20.1■□□□□ 0.81
Trim28-201ENSMUST00000005705 Vamp4O70480 141 aa20.1■□□□□ 0.81
Trim28-201ENSMUST00000005705 Prim1P20664 417 aa20.1■□□□□ 0.81
Trim28-201ENSMUST00000005705 Naip7Q9JIB3 1402 aa20.1■□□□□ 0.81
Trim28-201ENSMUST00000005705 Map3k19E9Q3S4 1311 aa20.09■□□□□ 0.81
Trim28-201ENSMUST00000005705 Ankrd50F7BE84 1390 aa20.09■□□□□ 0.81
Trim28-201ENSMUST00000005705 Synj2Q9D2G5 1434 aa20.09■□□□□ 0.81
Trim28-201ENSMUST00000005705 FanciQ8K368 1330 aa20.08■□□□□ 0.81
Trim28-201ENSMUST00000005705 4933402E13RikQ9D4D2 429 aa20.08■□□□□ 0.8
Trim28-201ENSMUST00000005705 Ythdc1E9Q5K9 736 aaKnown RBP20.07■□□□□ 0.8
Trim28-201ENSMUST00000005705 Ddit3P35639 168 aa20.07■□□□□ 0.8
Trim28-201ENSMUST00000005705 CarsQ9ER72 831 aaKnown RBP20.07■□□□□ 0.8
Trim28-201ENSMUST00000005705 Ercc6l2Q9JIM3 1537 aa20.06■□□□□ 0.8
Trim28-201ENSMUST00000005705 PtmaP26350 111 aa20.06■□□□□ 0.8
Trim28-201ENSMUST00000005705 Kif20aP97329 887 aa20.06■□□□□ 0.8
Trim28-201ENSMUST00000005705 Brd1E9PZ26 1189 aaKnown RBP20.05■□□□□ 0.8
Trim28-201ENSMUST00000005705 Kif13aQ9EQW7 1749 aa20.05■□□□□ 0.8
Trim28-201ENSMUST00000005705 Rbm10Q99KG3 930 aaKnown RBP20.04■□□□□ 0.8
Trim28-201ENSMUST00000005705 Q9D2X8 372 aa20.04■□□□□ 0.8
Trim28-201ENSMUST00000005705 CltcQ68FD5 1675 aaKnown RBP20.04■□□□□ 0.8
Trim28-201ENSMUST00000005705 Rrp12Q6P5B0 1295 aaKnown RBP20.04■□□□□ 0.8
Trim28-201ENSMUST00000005705 Cabp4Q8VHC5 271 aa20.04■□□□□ 0.8
Trim28-201ENSMUST00000005705 Nsd3Q6P2L6 1439 aa20.04■□□□□ 0.8
Trim28-201ENSMUST00000005705 Abca14E9Q8F8 1683 aa20.03■□□□□ 0.8
Trim28-201ENSMUST00000005705 Adgrl1Q80TR1 1466 aa20.03■□□□□ 0.8
Trim28-201ENSMUST00000005705 Aldh1l1Q8R0Y6 902 aa20.03■□□□□ 0.8
Trim28-201ENSMUST00000005705 Gtf3c5Q8R2T8 520 aa20.02■□□□□ 0.8
Trim28-201ENSMUST00000005705 Dnajc5gQ8C632 165 aa20.02■□□□□ 0.8
Trim28-201ENSMUST00000005705 Wdr63B2RY71 923 aa20.02■□□□□ 0.79
Trim28-201ENSMUST00000005705 PogkQ80TC5 607 aa20.02■□□□□ 0.79
Trim28-201ENSMUST00000005705 Bcl2l13P59017 434 aa20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 Tshz3Q8CGV9 1081 aa20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 Stk31Q99MW1 1018 aa20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 MvpQ9EQK5 861 aa20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 Arhgef28P97433 1693 aa20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 Safb2Q80YR5 991 aaKnown RBP20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 Hecw2Q6I6G8 1578 aa20.01■□□□□ 0.79
Trim28-201ENSMUST00000005705 Ttc21aQ8C0S4 1314 aa20■□□□□ 0.79
Trim28-201ENSMUST00000005705 NpatQ8BMA5 1420 aa20■□□□□ 0.79
Trim28-201ENSMUST00000005705 Trim27Q62158 513 aa20■□□□□ 0.79
Trim28-201ENSMUST00000005705 Bloc1s4Q8VED2 215 aa20■□□□□ 0.79
Trim28-201ENSMUST00000005705 Sytl4Q9R0Q1 673 aa20■□□□□ 0.79
Trim28-201ENSMUST00000005705 IghaA0A0A6YXW6 389 aa19.99■□□□□ 0.79
Trim28-201ENSMUST00000005705 Prune1Q8BIW1 454 aa19.99■□□□□ 0.79
Trim28-201ENSMUST00000005705 Phactr2B1AVP0 632 aa19.99■□□□□ 0.79
Trim28-201ENSMUST00000005705 Rsph4aQ8BYM7 716 aa19.99■□□□□ 0.79
Trim28-201ENSMUST00000005705 Med14A2ABV5 1459 aaKnown RBP19.99■□□□□ 0.79
Trim28-201ENSMUST00000005705 Gm10093D3YYI8 482 aa19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Hdac1O09106 482 aaKnown RBP19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Gnai1B2RSH2 354 aa19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Cpa2Q504N0 417 aa19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Trim28Q62318 834 aa19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Gnai3Q9DC51 354 aa19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Uhrf1bp1lA2RSJ4 1457 aa19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Q3TQI7 289 aaKnown RBP19.98■□□□□ 0.79
Trim28-201ENSMUST00000005705 Hsp90b1P08113 802 aaKnown RBP19.97■□□□□ 0.79
Trim28-201ENSMUST00000005705 Eif4g2Q62448 906 aaKnown RBP19.97■□□□□ 0.79
Trim28-201ENSMUST00000005705 Bcar3Q9QZK2 820 aa19.97■□□□□ 0.79
Trim28-201ENSMUST00000005705 Zfp91Q62511 572 aa19.97■□□□□ 0.79
Trim28-201ENSMUST00000005705 Rnf214Q8BFU3 668 aaKnown RBP19.97■□□□□ 0.79
Trim28-201ENSMUST00000005705 Ankrd44B2RXR6 993 aa19.96■□□□□ 0.79
Trim28-201ENSMUST00000005705 Fam83gQ5SWY7 812 aa19.96■□□□□ 0.79
Trim28-201ENSMUST00000005705 Prkar2bP31324 416 aa19.96■□□□□ 0.79
Trim28-201ENSMUST00000005705 Ciz1Q8VEH2 845 aa19.96■□□□□ 0.79
Trim28-201ENSMUST00000005705 Gm21190A0A0G2JGJ6 266 aa19.95■□□□□ 0.78
Trim28-201ENSMUST00000005705 Casq1O09165 405 aa19.95■□□□□ 0.78
Trim28-201ENSMUST00000005705 Ppp1r15aP17564 657 aa19.95■□□□□ 0.78
Trim28-201ENSMUST00000005705 Nckap5lQ6GQX2 1323 aa19.95■□□□□ 0.78
Trim28-201ENSMUST00000005705 Babam1Q3UI43 333 aa19.95■□□□□ 0.78
Trim28-201ENSMUST00000005705 Fchsd2Q3USJ8 740 aa19.95■□□□□ 0.78
Trim28-201ENSMUST00000005705 NktrP30415 1453 aa19.94■□□□□ 0.78
Trim28-201ENSMUST00000005705 Itsn1Q9Z0R4 1714 aa19.94■□□□□ 0.78
Trim28-201ENSMUST00000005705 Pdia4P08003 638 aaKnown RBP19.94■□□□□ 0.78
Trim28-201ENSMUST00000005705 Bag4Q8CI61 457 aa19.94■□□□□ 0.78
Retrieved 100 of 22,080 RNA–protein pairs in 15.6 ms