RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ITKQ08881 620 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 AP1B1Q10567 949 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 OVGP1Q12889 678 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 STAT4Q14765 748 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 TAZQ16635 292 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 CCDC181Q5TID7 509 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 TTC7BQ86TV6 843 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 MINDY1Q8N5J2 469 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 TEX26Q8N6G2 289 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 LRRC57Q8N9N7 239 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 C1orf216Q8TAB5 229 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 FAM174AQ8TBP5 190 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 CXorf40AQ8TE69 158 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 MAML1Q92585 1016 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 P3H4Q92791 437 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 SLC6A18Q96N87 628 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 OLFM3Q96PB7 478 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 ALS2CR12Q96Q35 445 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 FERMT1Q9BQL6 677 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 C1QTNF7Q9BXJ2 289 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 NT5MQ9NPB1 228 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 PCDHA3Q9Y5H8 950 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 ADGRG1Q9Y653 693 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 DUSP10Q9Y6W6 482 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 ZNF106Q9H2Y7 1883 aaKnown RBP13.12□□□□□ -0.31
CLK3-224ENST00000568605 LAMA1P25391 3075 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 hCG_1818297A0A087WSY0 165 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 RNF103O00237 685 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 VILLO15195 856 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 CST8O60676 142 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 PEX11BO96011 259 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 KRT10P13645 584 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 CCNB1P14635 433 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 CR2P20023 1033 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 IFI35P80217 286 aaPredicted RBP13.11□□□□□ -0.31
CLK3-224ENST00000568605 SGCGQ13326 291 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 UGP2Q16851 508 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 TMEM259Q4ZIN3 620 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 KAZNQ674X7 775 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 IQCHQ86VS3 1027 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 CAMK1DQ8IU85 385 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 NDUFAF2Q8N183 169 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 OXR1Q8N573 874 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 DENND6BQ8NEG7 585 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 KRT35Q92764 455 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 ORAI3Q9BRQ5 295 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 RXFP3Q9NSD7 469 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 DLL3Q9NYJ7 618 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 ATP8A1Q9Y2Q0 1164 aa13.11□□□□□ -0.31
CLK3-224ENST00000568605 A0A1B0GVT2 93 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 C4orf47A7E2U8 309 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 AREL1O15033 823 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 MUSKO15146 869 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 MTSS1O43312 755 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 DFNA5O60443 496 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 ZNF189O75820 626 aaPredicted RBP13.1□□□□□ -0.31
CLK3-224ENST00000568605 TM7SF2O76062 418 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 CPP00450 1065 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 PRLRP16471 622 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 PTPN7P35236 360 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 CSNK1EP49674 416 aaKnown RBP13.1□□□□□ -0.31
CLK3-224ENST00000568605 MAXP61244 160 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 CCZ1BP86790 482 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 CCZ1P86791 482 aaPredicted RBP13.1□□□□□ -0.31
CLK3-224ENST00000568605 ZNF284Q2VY69 593 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 ALG1LQ6GMV1 187 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 NT5DC3Q86UY8 548 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 MFSD2AQ8NA29 543 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 PDCD6IPQ8WUM4 868 aaKnown RBP13.1□□□□□ -0.31
CLK3-224ENST00000568605 TFB1MQ8WVM0 346 aaKnown RBP13.1□□□□□ -0.31
CLK3-224ENST00000568605 SPOCK2Q92563 424 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 RMDN1Q96DB5 314 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 ECHDC3Q96DC8 303 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 LGMNQ99538 433 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 SEMA3CQ99985 751 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 SLC17A9Q9BYT1 436 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 GDF3Q9NR23 364 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 RBM22Q9NW64 420 aaKnown RBP eCLIP13.1□□□□□ -0.319e-10■□□□□ 8.1
CLK3-224ENST00000568605 TRIM10Q9UDY6 481 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 GUCA1BQ9UMX6 200 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 ITM2BQ9Y287 266 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 EFR3BQ9Y2G0 817 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 ANKRD6Q9Y2G4 727 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 CAPN6Q9Y6Q1 641 aa13.1□□□□□ -0.31
CLK3-224ENST00000568605 CNOT1A5YKK6 2376 aaKnown RBP13.1□□□□□ -0.31
CLK3-224ENST00000568605 MYLKQ15746 1914 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 GOLGA6L9A6NEM1 432 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 A6NNZ2 444 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 APOC4-APOC2K7ER74 178 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 SLC31A1O15431 190 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 YKT6O15498 198 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 TJP3O95049 919 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 APOC2P02655 101 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 ZNF883P0CG24 379 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 MMP12P39900 470 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 CCT8P50990 548 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 SLC10A2Q12908 348 aaPredicted RBP13.09□□□□□ -0.31
CLK3-224ENST00000568605 INAVAQ3KP66 663 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 UAP1L1Q3KQV9 507 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 LRRC73Q5JTD7 316 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms