RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 PANK3Q9H999 370 aa5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 PLEKHA2Q9HB19 425 aa5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 EIF2B3Q9NR50 452 aaKnown RBP5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 SNX15Q9NRS6 342 aa5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 BEX4Q9NWD9 120 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 KNSTRNQ9Y448 316 aa5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 URB1O60287 2271 aaKnown RBP5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 MYH2Q9UKX2 1941 aa5.03□□□□□ -1.6
HMGB1P23-201ENST00000518743 PCNX1Q96RV3 2341 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 COL6A6A6NMZ7 2263 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 KRTAP23-1A1A580 65 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 A1L4Q6 167 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 ZAR1LA6NP61 321 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 AGPSO00116 658 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 GPR42O15529 346 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 PLOD3O60568 738 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 LRP3O75074 770 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 CDKL5O76039 1030 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 CLEC3BP05452 202 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 RETP07949 1114 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 CHN1P15882 459 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 BMPR1AP36894 532 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 PLCD1P51178 756 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 RCAN1P53805 252 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 TXNL4AP83876 142 aaKnown RBP5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 TROAPQ12815 778 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 CCDC96Q2M329 555 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 ZNF528Q3MIS6 628 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 RUNDC3AQ59EK9 446 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 FAM205BPQ63HN1 556 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 KRT74Q7RTS7 529 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 TMPRSS6Q8IU80 811 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 SIRT6Q8N6T7 355 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 SRFBP1Q8NEF9 429 aaKnown RBP5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 OR52L2PQ8NGH6 319 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 GLMPQ8WWB7 406 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 SAAL1Q96ER3 474 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 TLE6Q9H808 572 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 PDE11AQ9HCR9 933 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 HAUS2Q9NVX0 235 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 HYPKQ9NX55 129 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 VSX1Q9NZR4 365 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 HSF4Q9ULV5 492 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 OSGIN2Q9Y236 505 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 CELSR3Q9NYQ7 3312 aa5.02□□□□□ -1.61
HMGB1P23-201ENST00000518743 LRRK2Q5S007 2527 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 GRIN2DO15399 1336 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MROH5Q6ZUA9 1318 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 RELNP78509 3460 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MARCH11A6NNE9 402 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ZNF213O14771 459 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 CAPN9O14815 690 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 PER2O15055 1255 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ZNF185O15231 689 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 METTL18O95568 372 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MMP1P03956 469 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 LAMP2P13473 410 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 GKP32189 559 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 HOXD12P35452 270 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 TPTEP56180 551 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 RPL15P61313 204 aaKnown RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 FHL3Q13643 280 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ACVR2BQ13705 512 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 GEN1Q17RS7 908 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ERCC6LQ2NKX8 1250 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 VMACQ2NL98 169 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 TBC1D25Q3MII6 688 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 RILPL1Q5EBL4 403 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 PLAC9Q5JTB6 97 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 B3GNTL1Q67FW5 361 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ACSM6Q6P461 480 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 TMCO3Q6UWJ1 677 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MAMDC4Q6UXC1 1216 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 LRRC55Q6ZSA7 311 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 TLK2Q86UE8 772 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 PNPLA1Q8N8W4 532 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 RFWD2Q8NHY2 731 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 GLG1Q92896 1179 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MAP4K1Q92918 833 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ATP2A3Q93084 1043 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 FUBP1Q96AE4 644 aaKnown RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 ARRDC3Q96B67 414 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 NSUN4Q96CB9 384 aaKnown RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 PGBD1Q96JS3 809 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 C5orf34Q96MH7 638 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MECRQ9BV79 373 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 IDI2Q9BXS1 227 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 RNF26Q9BY78 433 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 STN1Q9H668 368 aaKnown RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 RPAP3Q9H6T3 665 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 PRKRIP1Q9H875 184 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 GPR108Q9NPR9 543 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 SMYD2Q9NRG4 433 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 TBCCD1Q9NVR7 557 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 PPP4R1LQ9P1A2 415 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 LYVE1Q9Y5Y7 322 aa5.01□□□□□ -1.61
HMGB1P23-201ENST00000518743 MAPK8IP3Q9UPT6 1336 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms