RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 TAS2R38P59533 333 aa26.06■■□□□ 1.76
TRIM28-204ENST00000594806 BRAT1Q6PJG6 821 aa26.06■■□□□ 1.76
TRIM28-204ENST00000594806 PARS2Q7L3T8 475 aaKnown RBP26.06■■□□□ 1.76
TRIM28-204ENST00000594806 POLR1EQ9GZS1 481 aaKnown RBP26.06■■□□□ 1.76
TRIM28-204ENST00000594806 TSPAN11A1L157 253 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 APOC4-APOC2K7ER74 178 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 MUSKO15146 869 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 APOC2P02655 101 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 BCL2L1Q07817 233 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 ALG1LQ6GMV1 187 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 TRIM58Q8NG06 486 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 LGMNQ99538 433 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 SCUBE2Q9NQ36 999 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 TMEM74BQ9NUR3 256 aa26.05■■□□□ 1.76
TRIM28-204ENST00000594806 RBM22Q9NW64 420 aaKnown RBP eCLIP26.05■■□□□ 1.761e-11■■■■■ 40.4
TRIM28-204ENST00000594806 A0A1B0GTW7 788 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 KHNYNO15037 678 aaKnown RBP26.04■■□□□ 1.76
TRIM28-204ENST00000594806 DDX3YO15523 660 aaKnown RBP26.04■■□□□ 1.76
TRIM28-204ENST00000594806 ZSCAN12O43309 604 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 MTSS1O43312 755 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 LATO43561 262 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 TSPAN6O43657 245 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 TJP3O95049 919 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 IGHV4-34P06331 123 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 PYGMP11217 842 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 POLR2LP62875 67 aaKnown RBP26.04■■□□□ 1.76
TRIM28-204ENST00000594806 IFI35P80217 286 aaPredicted RBP26.04■■□□□ 1.76
TRIM28-204ENST00000594806 CFAP58Q5T655 872 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 SLC23A3Q6PIS1 610 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 NPNTQ6UXI9 565 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 PRPF39Q86UA1 669 aaKnown RBP26.04■■□□□ 1.76
TRIM28-204ENST00000594806 PGBD5Q8N414 524 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 SNX19Q92543 992 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 SPOCK2Q92563 424 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 FEM1CQ96JP0 617 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 NT5MQ9NPB1 228 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 PARD6AQ9NPB6 346 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 EIF2B4Q9UI10 523 aaKnown RBP26.04■■□□□ 1.76
TRIM28-204ENST00000594806 FADS3Q9Y5Q0 445 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 GVINP1Q7Z2Y8 2422 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 TRPM6Q9BX84 2022 aa26.04■■□□□ 1.76
TRIM28-204ENST00000594806 A0A1W2PPC4 97 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 HACD1B0YJ81 288 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 SOCS5O75159 536 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 ADCY2Q08462 1091 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 AP1B1Q10567 949 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 XRCC4Q13426 336 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 CCDC181Q5TID7 509 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 PRR23CQ6ZRP0 262 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 TTC7BQ86TV6 843 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 CAMK1DQ8IU85 385 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 TFB1MQ8WVM0 346 aaKnown RBP26.03■■□□□ 1.76
TRIM28-204ENST00000594806 IL12RB2Q99665 862 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 HEMGNQ9BXL5 484 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 PACSIN2Q9UNF0 486 aaPredicted RBP26.03■■□□□ 1.76
TRIM28-204ENST00000594806 DMTF1Q9Y222 760 aa26.03■■□□□ 1.76
TRIM28-204ENST00000594806 CACNA1EQ15878 2313 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 BCAT2O15382 392 aaPredicted RBP26.02■■□□□ 1.76
TRIM28-204ENST00000594806 PIGNO95427 931 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 SERPINF2P08697 491 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 XPAP23025 273 aaPredicted RBP26.02■■□□□ 1.76
TRIM28-204ENST00000594806 MAOBP27338 520 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 ELP6Q0PNE2 266 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 LLGL1Q15334 1064 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 KIAA1161Q6NSJ0 714 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 HORMAD1Q86X24 394 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 C12orf50Q8NA57 414 aaPredicted RBP26.02■■□□□ 1.76
TRIM28-204ENST00000594806 C1orf216Q8TAB5 229 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 ECHDC3Q96DC8 303 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 NUSAP1Q9BXS6 441 aaKnown RBP26.02■■□□□ 1.76
TRIM28-204ENST00000594806 KCNF1Q9H3M0 494 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 SLC6A14Q9UN76 642 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 ATP8A1Q9Y2Q0 1164 aa26.02■■□□□ 1.76
TRIM28-204ENST00000594806 GOLGA6L9A6NEM1 432 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 RNGTTO60942 597 aaKnown RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 ZNF189O75820 626 aaPredicted RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 PCDH8O95206 1070 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 TIMP2P16035 220 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 PECAM1P16284 738 aaPredicted RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 MAXP61244 160 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 RPS21P63220 83 aaKnown RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 LMNB2Q03252 620 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 ITKQ08881 620 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 CCDC173Q0VFZ6 552 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 PRKD1Q15139 912 aaPredicted RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 UGP2Q16851 508 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 SETMARQ53H47 684 aaPredicted RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 TRIM61Q5EBN2 209 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 MEI1Q5TIA1 1274 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 ATXN2Q99700 1313 aaKnown RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 MIR1-1HGQ9H1L0 117 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 NOD2Q9HC29 1040 aa26.01■■□□□ 1.75
TRIM28-204ENST00000594806 SAE1Q9UBE0 346 aaPredicted RBP26.01■■□□□ 1.75
TRIM28-204ENST00000594806 USP34Q70CQ2 3546 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 KCNK1O00180 336 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 TRAFD1O14545 582 aaPredicted RBP26■■□□□ 1.75
TRIM28-204ENST00000594806 AREL1O15033 823 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 HTRA2O43464 458 aaPredicted RBP26■■□□□ 1.75
TRIM28-204ENST00000594806 JCHAINP01591 159 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 NFKBIAP25963 317 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms