RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZRANB2O95218 330 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLK3-224ENST00000568605 CER1O95813 267 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 CCDC175P0C221 793 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 TGM2P21980 687 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 GKP32189 559 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 COPS2P61201 443 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 PPP2CBP62714 309 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 RPS21P63220 83 aaKnown RBP13.14□□□□□ -0.31
CLK3-224ENST00000568605 PPP2CAP67775 309 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 IRX4P78413 519 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 GBE1Q04446 702 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 BCL2L1Q07817 233 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 SLC10A7Q0GE19 358 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 PDK1Q15118 436 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 PPP2R5EQ16537 467 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 TFDP3Q5H9I0 405 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 NAPEPLDQ6IQ20 393 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 SPOCD1Q6ZMY3 1216 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 HORMAD1Q86X24 394 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 TP53INP2Q8IXH6 220 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 CCDC13Q8IYE1 715 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 RCOR2Q8IZ40 523 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 PQLC3Q8N755 202 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 UBL4BQ8N7F7 174 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 PLD5Q8N7P1 536 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 CCNYQ8ND76 341 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 EXD1Q8NHP7 514 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 TSGA13Q96PP4 275 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 MGME1Q9BQP7 344 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 RTKNQ9BST9 563 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 POLR1EQ9GZS1 481 aaKnown RBP13.14□□□□□ -0.31
CLK3-224ENST00000568605 LACRTQ9GZZ8 138 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 SUV39H2Q9H5I1 410 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 TM9SF3Q9HD45 589 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 SCUBE2Q9NQ36 999 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 AASDHPPTQ9NRN7 309 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 DTLQ9NZJ0 730 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 SALL4Q9UJQ4 1053 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 AMFRQ9UKV5 643 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 HEY1Q9Y5J3 304 aa13.14□□□□□ -0.31
CLK3-224ENST00000568605 ZFC3H1O60293 1989 aaKnown RBP13.14□□□□□ -0.31
CLK3-224ENST00000568605 A0A1W2PQU0 124 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 TSPAN11A1L157 253 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 C3orf70A6NLC5 250 aaPredicted RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 MIF4GDA9UHW6 222 aaKnown RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 SOCS5O75159 536 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 MAP3K6O95382 1288 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 PIGNO95427 931 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 CA4P22748 312 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 MAT2AP31153 395 aaKnown RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 CDKN2BP42772 138 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 NR2C2P49116 596 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 SCNN1BP51168 640 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 C21orf59P57076 290 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 TAS2R38P59533 333 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 POLR2LP62875 67 aaKnown RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 DYNLT1P63172 113 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 PPIDQ08752 370 aaKnown RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 GRIK2Q13002 908 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 PUM1Q14671 1186 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-224ENST00000568605 RSPO4Q2I0M5 234 aaPredicted RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 STPG1Q5TH74 334 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 ERAP2Q6P179 960 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 MFSD7Q6UXD7 560 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 PEX26Q7Z412 305 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 LRRC8AQ8IWT6 810 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 RNF10Q8N5U6 811 aaKnown RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 UBE2Q2Q8WVN8 375 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 FEM1CQ96JP0 617 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 SERAC1Q96JX3 654 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 NUDCD1Q96RS6 583 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 GTPBP2Q9BX10 602 aaKnown RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 BRD8Q9H0E9 1235 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 TTLL3Q9Y4R7 772 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 FADS3Q9Y5Q0 445 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 DMXL1Q9Y485 3027 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 KNL1Q8NG31 2342 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 CABIN1Q9Y6J0 2220 aa13.13□□□□□ -0.31
CLK3-224ENST00000568605 COL5A1P20908 1838 aaPredicted RBP13.13□□□□□ -0.31
CLK3-224ENST00000568605 GRID2IPA4D2P6 1211 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 UPK3BL1B0FP48 263 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 C10orf142B7Z368 130 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 UPK3BL2E5RIL1 263 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 PRAMEF26H0Y7S4 382 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 SLC30A4O14863 429 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 MATN3O15232 486 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 INSIG1O15503 277 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 GDF9O60383 454 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 OPHN1O60890 802 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 PTMAP06454 111 aaKnown RBP13.12□□□□□ -0.31
CLK3-224ENST00000568605 HNRNPA2B1P22626 353 aaKnown RBP13.12□□□□□ -0.31
CLK3-224ENST00000568605 CES1P23141 567 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 CTNNA2P26232 953 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 CD38P28907 300 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 AKT2P31751 481 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 ABL2P42684 1182 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 RGRP47804 291 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 ID4P47928 161 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 MARCKSL1P49006 195 aa13.12□□□□□ -0.31
CLK3-224ENST00000568605 RWDD2BP57060 319 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms