RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SPASTQ9UBP0 616 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 TNPO3Q9Y5L0 923 aaKnown RBP19.45■□□□□ 0.7
USP48-201ENST00000308271 TEX264Q9Y6I9 313 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 C2CD4BA6NLJ0 364 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 RAMP2O60895 175 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 LSM3P62310 102 aaKnown RBP19.45■□□□□ 0.7
USP48-201ENST00000308271 DDX39BQ13838 428 aaKnown RBP19.45■□□□□ 0.7
USP48-201ENST00000308271 HERC3Q15034 1050 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 SFT2D3Q587I9 215 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 GPSM1Q86YR5 675 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 ELOVL4Q9GZR5 314 aa19.45■□□□□ 0.7
USP48-201ENST00000308271 H2AFY2Q9P0M6 372 aaPredicted RBP19.45■□□□□ 0.7
USP48-201ENST00000308271 CPSF4O95639 269 aaKnown RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 ITGALP20701 1170 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 PPP3CCP48454 512 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 PLCL1Q15111 1095 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SLC25A52Q3SY17 297 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 MSS51Q4VC12 460 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 NKAPQ8N5F7 415 aaKnown RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 C19orf18Q8NEA5 215 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 CCNB1IP1Q9NPC3 277 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 PCDHB8Q9UN66 801 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 F8W810 466 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 UGT1A9O60656 530 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 AKAP5P24588 427 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 S100A3P33764 101 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SOAT1P35610 550 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SLC11A2P49281 568 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SCNN1BP51168 640 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 CCR3P51677 355 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 AIF1P55008 147 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 OXCT1P55809 520 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 KLF1Q13351 362 aaPredicted RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 ZNF177Q13360 481 aaPredicted RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 ITGA7Q13683 1181 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 CEP78Q5JTW2 689 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 ARHGAP36Q6ZRI8 547 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 REEP1Q9H902 201 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 UGT1A7Q9HAW7 530 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 UGT1A10Q9HAW8 530 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 UGT1A8Q9HAW9 530 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 PIDD1Q9HB75 910 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 AP2A1O95782 977 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 CST1P01037 141 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 USP17L7P0C7H9 530 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 IL12RB1P42701 662 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 RPS9P46781 194 aaKnown RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 INO80DQ53TQ3 878 aaPredicted RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 GALNT18Q6P9A2 607 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 EIF2B3Q9NR50 452 aaKnown RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 VWA7Q9Y334 891 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 PABPC4LP0CB38 370 aaKnown RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 MGAT5BQ3V5L5 792 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 CRTC3Q6UUV7 619 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 GLB1LQ6UWU2 654 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SLC26A9Q7LBE3 791 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SLCO6A1Q86UG4 719 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 PCDH19Q8TAB3 1148 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 HPS1Q92902 700 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 SEPT5Q99719 369 aaPredicted RBP19.44■□□□□ 0.7
USP48-201ENST00000308271 RMI1Q9H9A7 625 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 NUDT5Q9UKK9 219 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 GMPPBQ9Y5P6 360 aa19.44■□□□□ 0.7
USP48-201ENST00000308271 NRXN3Q9Y4C0 1643 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 MYH6P13533 1939 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 WNT10BO00744 389 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 PTPN1P18031 435 aaKnown RBP19.43■□□□□ 0.7
USP48-201ENST00000308271 THOP1P52888 689 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SEMA5AQ13591 1074 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 GRM3Q14832 879 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 CDCA2Q69YH5 1023 aaPredicted RBP19.43■□□□□ 0.7
USP48-201ENST00000308271 REP15Q6BDI9 236 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 THAP5Q7Z6K1 395 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 TFAP2DQ7Z6R9 452 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 KBTBD8Q8NFY9 601 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SPPL2AQ8TCT8 520 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SH3KBP1Q96B97 665 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SCUBE2Q9NQ36 999 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 CCDC189A1A4V9 331 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 UMPSP11172 480 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 PTPN9P43378 593 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 FAM187BQ17R55 369 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 TEX44Q53QW1 395 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 TXNRD3NBQ6F5E7 133 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 LRRC49Q8IUZ0 686 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SERPINB11Q96P15 392 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 CATSPERZQ9NTU4 200 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 FER1L4A9Z1Z3 1794 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 SLIT2O94813 1529 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 A0A1B0GW55 424 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 FAM159BA6NKW6 160 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 PRR23D1E9PI22 279 aaPredicted RBP19.43■□□□□ 0.7
USP48-201ENST00000308271 MFSD11O43934 449 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 VNN1O95497 513 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 DUX4L2P0CJ85 424 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 DUX4L3P0CJ86 424 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 DUX4L4P0CJ87 422 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 DUX4L5P0CJ88 424 aa19.43■□□□□ 0.7
USP48-201ENST00000308271 DUX4L6P0CJ89 424 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms