RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ITGB7P26010 798 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 POLD3Q15054 466 aaPredicted RBP19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 RAB6CQ53S08 254 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 EFHC2Q5JST6 749 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 FAM72AQ5TYM5 149 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 FAM72DQ6L9T8 149 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 TMPRSS7Q7RTY8 843 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 HORMAD1Q86X24 394 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 FAM72BQ86X60 149 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 CCDC185Q8N715 623 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 GRIN3AQ8TCU5 1115 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 ARHGEF2Q92974 986 aaKnown RBP19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 RAB6CQ9H0N0 254 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 DONSONQ9NYP3 566 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 WASF2Q9Y6W5 498 aa19.44■□□□□ 0.7
CCDC28A-203ENST00000617445 PLXNB3Q9ULL4 1909 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 ANKRD11Q6UB99 2663 aaPredicted RBP19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 A0A1W2PQU0 124 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 TNFAIP3P21580 790 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 AKT2P31751 481 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 ACVRL1P37023 503 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 DNA2P51530 1060 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 NEK3P51956 506 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 IL9RQ01113 521 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 SHBQ15464 509 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 DCUN1D2Q6PH85 259 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 MCOLN2Q8IZK6 566 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 TMEM145Q8NBT3 493 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 CASKIN2Q8WXE0 1202 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 ZCCHC14Q8WYQ9 949 aaKnown RBP19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 KLHDC7BQ96G42 594 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 NDFIP2Q9NV92 336 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 DNAI1Q9UI46 699 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 PCDHGA1Q9Y5H4 931 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 ACACAQ13085 2346 aa19.43■□□□□ 0.7
CCDC28A-203ENST00000617445 A0A1W2PQC6 194 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 TEX33O43247 280 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 KDELR3O43731 214 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 AP1G1O43747 822 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 PCDH8O95206 1070 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 LDOC1O95751 146 aaPredicted RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 CD160O95971 181 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 C1SP09871 688 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 HNRNPA2B1P22626 353 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 EPHA8P29322 1005 aaPredicted RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 HTR7P34969 479 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 CCNHP51946 323 aaPredicted RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 YBEYP58557 167 aaPredicted RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 SNRPD1P62314 119 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 ZNF284Q2VY69 593 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 PPP1R15BQ5SWA1 713 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 PRAMEF14Q5SWL7 426 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 KIAA1161Q6NSJ0 714 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 SCYL2Q6P3W7 929 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 FBXL19Q6PCT2 694 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 SPATS2Q86XZ4 545 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 RTL3Q8N8U3 475 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 BAP1Q92560 729 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 RAB7BQ96AH8 199 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 FEM1CQ96JP0 617 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 MCEEQ96PE7 176 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 EPAS1Q99814 870 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 CATSPERBQ9H7T0 1116 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 PARVAQ9NVD7 372 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 NEU3Q9UQ49 428 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 FCF1Q9Y324 198 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 FAM208BQ5VWN6 2430 aa19.42■□□□□ 0.7
CCDC28A-203ENST00000617445 EIF3CLB5ME19 914 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 SLC31A1O15431 190 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 CCP110O43303 1012 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 POP4O95707 220 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 GSRP00390 522 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 ADRB3P13945 408 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 EPHB2P29323 1055 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 ZNF165P49910 485 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 RPL7AP62424 266 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 RPS21P63220 83 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 GATAD2AQ86YP4 633 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 DCP2Q8IU60 420 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 EIF3CQ99613 913 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 SYT11Q9BT88 431 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 OSBPL1AQ9BXW6 950 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 EDEM3Q9BZQ6 932 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 AIPL1Q9NZN9 384 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 FZD10Q9ULW2 581 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 HS3ST3A1Q9Y663 406 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 ASPMQ8IZT6 3477 aa19.41■□□□□ 0.7
CCDC28A-203ENST00000617445 PKD1L2Q7Z442 2459 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 WASH4PA8MWX3 477 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 ENC1O14682 589 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 FGF10O15520 208 aaPredicted RBP19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 GZMAP12544 262 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 TMEM259Q4ZIN3 620 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 INO80DQ53TQ3 878 aaPredicted RBP19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 OR2AP1Q8NGE2 309 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 ARHGEF26Q96DR7 871 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 IFT43Q96FT9 208 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 CNDP2Q96KP4 475 aaKnown RBP19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 MAGEB5Q9BZ81 275 aa19.4■□□□□ 0.7
CCDC28A-203ENST00000617445 KLHL11Q9NVR0 708 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms