RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SNRPD1P62314 119 aaKnown RBP15.21■□□□□ 0.03
NUP54-213ENST00000513352 SLC10A7Q0GE19 358 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 XRCC4Q13426 336 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 ENPP2Q13822 863 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 PRKD1Q15139 912 aaPredicted RBP15.21■□□□□ 0.03
NUP54-213ENST00000513352 CYTH1Q15438 398 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 CRY1Q16526 586 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 KIAA1324Q6UXG2 1013 aaKnown RBP15.21■□□□□ 0.03
NUP54-213ENST00000513352 TMEM92Q6UXU6 159 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 PGBD3Q8N328 593 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 RASGEF1CQ8N431 466 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 DTWD2Q8NBA8 298 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 TSEN2Q8NCE0 465 aaKnown RBP15.21■□□□□ 0.03
NUP54-213ENST00000513352 OR6K2Q8NGY2 324 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 HMGB4Q8WW32 186 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 OR8D1Q8WZ84 308 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 PTPRN2Q92932 1015 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 GDAP1L1Q96MZ0 367 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 C1QTNF1Q9BXJ1 281 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 AP1M1Q9BXS5 423 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 ZDHHC6Q9H6R6 413 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 C11orf16Q9NQ32 467 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 PRSS16Q9NQE7 514 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 HAUS2Q9NVX0 235 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 RBM22Q9NW64 420 aaKnown RBP eCLIP15.21■□□□□ 0.03
NUP54-213ENST00000513352 C2orf42Q9NWW7 574 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 LHX3Q9UBR4 397 aa15.21■□□□□ 0.03
NUP54-213ENST00000513352 A0A1W2PQF6 199 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 TARSL2A2RTX5 802 aaKnown RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 PRR33A8MZF0 331 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 KRIT1O00522 736 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 KCNN4O15554 427 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 MTSS1O43312 755 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 GPR37L1O60883 481 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 RNASEH1O60930 286 aaKnown RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 ALDH1A2O94788 518 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 STK10O94804 968 aaKnown RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 JCHAINP01591 159 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 PRLRP16471 622 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 RBL1P28749 1068 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 AVPR2P30518 371 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 MAXP61244 160 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 ZNF33AQ06730 810 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 CAMK2GQ13555 558 aaPredicted RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 HNRNPDQ14103 355 aaKnown RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 CARD16Q5EG05 197 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 FAM182AQ5T1J6 154 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 C9orf64Q5T6V5 341 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 DSG4Q86SJ6 1040 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 PAF1Q8N7H5 531 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 OR2AP1Q8NGE2 309 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 GRIN3AQ8TCU5 1115 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 HTR3CQ8WXA8 447 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 MAML1Q92585 1016 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 ISG20Q96AZ6 181 aaKnown RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 FRMD8P1Q9BZ68 369 aaPredicted RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 HECAQ9UBI9 543 aaPredicted RBP15.2■□□□□ 0.02
NUP54-213ENST00000513352 DNPEPQ9ULA0 475 aa15.2■□□□□ 0.02
NUP54-213ENST00000513352 KMT2EQ8IZD2 1858 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 GOLGA6L10A0A0M3HER8 536 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 RNF103O00237 685 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 LIASO43766 372 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 URI1O94763 535 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 APBB3O95704 486 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 PEX11BO96011 259 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 GSRP00390 522 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 TUBB4AP04350 444 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 HSPA9P38646 679 aaKnown RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 PAFAH1B1P43034 410 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 PSMD8P48556 350 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 CCNHP51946 323 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 IFI35P80217 286 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 RAD51Q06609 339 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 ZBTB17Q13105 803 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 BYSLQ13895 437 aaKnown RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 ELAVL3Q14576 367 aaKnown RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 ZNF776Q68DI1 518 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 ANO7Q6IWH7 933 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 DPY19L3Q6ZPD9 716 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 MMAAQ8IVH4 418 aaKnown RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 CHST14Q8NCH0 376 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 OR2A12Q8NGT7 310 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 OR2T3Q8NH03 318 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 ACTRT1Q8TDG2 376 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 AGAP3Q96P47 875 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 SLC6A17Q9H1V8 727 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 FBRSQ9HAH7 460 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 SCUBE2Q9NQ36 999 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 KLHL8Q9P2G9 620 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 EVLQ9UI08 416 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 TTC7AQ9ULT0 858 aaPredicted RBP15.19■□□□□ 0.02
NUP54-213ENST00000513352 ZNF148Q9UQR1 794 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 CACNA1IQ9P0X4 2223 aa15.19■□□□□ 0.02
NUP54-213ENST00000513352 ANKRD36A6QL64 1941 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 TTC24A2A3L6 582 aaPredicted RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 MUSKO15146 869 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 ZNF821O75541 412 aaPredicted RBP15.18■□□□□ 0.02
NUP54-213ENST00000513352 IL1BP01584 269 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 HLA-DQB2P05538 268 aa15.18■□□□□ 0.02
NUP54-213ENST00000513352 ACADMP11310 421 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms