RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ITM2CQ9NQX7 267 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 RCOR3Q9P2K3 495 aaPredicted RBP13.28□□□□□ -0.28
CLK3-224ENST00000568605 GON4LQ3T8J9 2241 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 MTA2O94776 668 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 LCA5LO95447 670 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 KRT7P08729 469 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 GOT1P17174 413 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 C5AR1P21730 350 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 MPLP40238 635 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 MAGEA1P43355 309 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 PSMD8P48556 350 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 NDST2P52849 883 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 ARF5P84085 180 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 CREB5Q02930 508 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 SLC25A11Q02978 314 aaKnown RBP13.27□□□□□ -0.29
CLK3-224ENST00000568605 CA9Q16790 459 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 KCNT1Q5JUK3 1230 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 ZFYVE27Q5T4F4 411 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 ARTNQ5T4W7 220 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 DAB2IPQ5VWQ8 1189 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 LYSMD4Q5XG99 296 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 Q6ZVU0 165 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 CYP4V2Q6ZWL3 525 aaPredicted RBP13.27□□□□□ -0.29
CLK3-224ENST00000568605 RABEPKQ7Z6M1 372 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 UMODL1-AS1Q8N2C9 162 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 LZTR1Q8N653 840 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 PCDH20Q8N6Y1 951 aaKnown RBP13.27□□□□□ -0.29
CLK3-224ENST00000568605 SLC35G2Q8TBE7 412 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 GANCQ8TET4 914 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 CASKIN2Q8WXE0 1202 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 PTPRN2Q92932 1015 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 FOXJ1Q92949 421 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 PCED1AQ9H1Q7 454 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 PABPC3Q9H361 631 aaKnown RBP13.27□□□□□ -0.29
CLK3-224ENST00000568605 MTG2Q9H4K7 406 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 NDFIP2Q9NV92 336 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 USP34Q70CQ2 3546 aa13.27□□□□□ -0.29
CLK3-224ENST00000568605 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 ARHGAP42A6NI28 874 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 TMEM110-MUSTN1A8MSY1 372 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 MEI4A8MW99 385 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 RASA4BC9J798 803 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 RASA4O43374 803 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 BNIP3LO60238 219 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 IL1BP01584 269 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 PRNPP04156 253 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 RARAP10276 462 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 FECHP22830 423 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 GLDCP23378 1020 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 PTPRZ1P23471 2315 aaPredicted RBP13.26□□□□□ -0.29
CLK3-224ENST00000568605 IL1R2P27930 398 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 HOXD12P35452 270 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 GJC1P36383 396 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 ACVRL1P37023 503 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 GSDMDP57764 484 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 SPEM2Q0P670 501 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 CCDC15Q0P6D6 951 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 MESDQ14696 234 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 ODF2Q5BJF6 829 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 SYCP2LQ5T4T6 812 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 GPR179Q6PRD1 2367 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 TMCO3Q6UWJ1 677 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 LINGO4Q6UY18 593 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 POLNQ7Z5Q5 900 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 MMAAQ8IVH4 418 aaKnown RBP13.26□□□□□ -0.29
CLK3-224ENST00000568605 MAP7D3Q8IWC1 876 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 TMEFF1Q8IYR6 380 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 STK40Q8N2I9 435 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 FRS2Q8WU20 508 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 TOE1Q96GM8 510 aaKnown RBP13.26□□□□□ -0.29
CLK3-224ENST00000568605 PPP1R16AQ96I34 528 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 CALR3Q96L12 384 aaKnown RBP13.26□□□□□ -0.29
CLK3-224ENST00000568605 PCDH15Q96QU1 1955 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 OMDQ99983 421 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 MAGEB5Q9BZ81 275 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 BTBD1Q9H0C5 482 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 SGK2Q9HBY8 427 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 OSGEPQ9NPF4 335 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 MBD1Q9UIS9 605 aaPredicted RBP13.26□□□□□ -0.29
CLK3-224ENST00000568605 FZD4Q9ULV1 537 aa13.26□□□□□ -0.29
CLK3-224ENST00000568605 MCF2LO15068 1137 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 KDELR3O43731 214 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 ZMPSTE24O75844 475 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 NDUFA10O95299 355 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 ERCC2P18074 760 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 SLC8A1P32418 973 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 SLC1A1P43005 524 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 CDH6P55285 790 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 SNRPD1P62314 119 aaKnown RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 LMNB2Q03252 620 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 ZNF33AQ06730 810 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 DPYSQ14117 519 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 PDK2Q15119 407 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 TCEAL1Q15170 157 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 CSRP2Q16527 193 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 WDR45BQ5MNZ6 344 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 ARMCX6Q7L4S7 300 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 FAM124AQ86V42 546 aa13.25□□□□□ -0.29
CLK3-224ENST00000568605 C12orf50Q8NA57 414 aaPredicted RBP13.25□□□□□ -0.29
CLK3-224ENST00000568605 SPC24Q8NBT2 197 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms