RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CFAP58Q5T655 872 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 CDC73Q6P1J9 531 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 PDXDC1Q6P996 788 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 CADM4Q8NFZ8 388 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 FAM120BQ96EK7 910 aaKnown RBP7.89□□□□□ -1.15
NUP54-215ENST00000514313 FTOQ9C0B1 505 aaKnown RBP eCLIP7.89□□□□□ -1.15
NUP54-215ENST00000514313 C20orf141Q9NUB4 165 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 SH3BP4Q9P0V3 963 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 ADAM21Q9UKJ8 722 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 PCDHGB4Q9UN71 923 aa7.89□□□□□ -1.15
NUP54-215ENST00000514313 RUSC2Q8N2Y8 1516 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 VILLO15195 856 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 CBX6O95503 412 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 GALTP07902 379 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 FCGR2AP12318 317 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 AKR1A1P14550 325 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 CLK3P49761 638 aaKnown RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 PFKFB3Q16875 520 aaPredicted RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 DUSP28Q4G0W2 176 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 HECTD2Q5U5R9 776 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 ZKSCAN2Q63HK3 967 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 IGFL4Q6B9Z1 124 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 GRASPQ7Z6J2 395 aaPredicted RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 KLBQ86Z14 1044 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 SRBD1Q8N5C6 995 aaKnown RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 WDTC1Q8N5D0 677 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 DNAAF1Q8NEP3 725 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 ZFPM2Q8WW38 1151 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 INTS12Q96CB8 462 aaKnown RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 P2RY11Q96G91 374 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 SNTG1Q9NSN8 517 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 NLKQ9UBE8 527 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 ZNF215Q9UL58 517 aaPredicted RBP7.88□□□□□ -1.15
NUP54-215ENST00000514313 ICKQ9UPZ9 632 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 DHDHQ9UQ10 334 aa7.88□□□□□ -1.15
NUP54-215ENST00000514313 KCNJ18B7U540 433 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 PLOD3O60568 738 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 CPOXP36551 454 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 OLR1P78380 273 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 ABHD18Q0P651 414 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 RPE65Q16518 533 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 SPATS1Q496A3 300 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 LCE3BQ5TA77 95 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 FAM171A1Q5VUB5 890 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 TMCO3Q6UWJ1 677 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 TMEM217Q8N7C4 229 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 SLC9A6Q92581 669 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 ZNF764Q96H86 408 aaPredicted RBP7.87□□□□□ -1.15
NUP54-215ENST00000514313 SCPEP1Q9HB40 452 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 KIAA1456Q9P272 454 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 ZNF70Q9UC06 446 aaPredicted RBP7.87□□□□□ -1.15
NUP54-215ENST00000514313 SLCO3A1Q9UIG8 710 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 MKLN1Q9UL63 735 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 CAPN7Q9Y6W3 813 aa7.87□□□□□ -1.15
NUP54-215ENST00000514313 FAM237BA0A1B0GVD1 139 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 LIPT2A6NK58 231 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 IFNL4K9M1U5 179 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 JTBO76095 146 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 HLA-DQA2P01906 255 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 ST6GAL1P15907 406 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 FMO4P31512 558 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 PPARGP37231 505 aaPredicted RBP7.86□□□□□ -1.15
NUP54-215ENST00000514313 SNX16P57768 344 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 CHAF1BQ13112 559 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 PUM1Q14671 1186 aaKnown RBP eCLIP7.86□□□□□ -1.15
NUP54-215ENST00000514313 MFSD4BQ5TF39 518 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 TTI2Q6NXR4 508 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 NCEH1Q6PIU2 408 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 CYP20A1Q6UW02 462 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 MOB3CQ70IA8 216 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 SLC46A3Q7Z3Q1 461 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 TADA2BQ86TJ2 420 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 FAM160B2Q86V87 743 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 FRMD1Q8N878 549 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 C11orf65Q8NCR3 313 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 SCFD2Q8WU76 684 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 FCRL5Q96RD9 977 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 MXD3Q9BW11 206 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 CXorf56Q9H5V9 222 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 ERVK-5Q9HDB9 667 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 MLXIPLQ9NP71 852 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 ENTPD7Q9NQZ7 604 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 IL17RBQ9NRM6 502 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 SERGEFQ9UGK8 458 aa7.86□□□□□ -1.15
NUP54-215ENST00000514313 TARSL2A2RTX5 802 aaKnown RBP7.85□□□□□ -1.15
NUP54-215ENST00000514313 SYNDIG1LA6NDD5 238 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 CXorf65A6NEN9 183 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 SNAP23O00161 211 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 P4HA2O15460 535 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 NARSO43776 548 aaKnown RBP7.85□□□□□ -1.15
NUP54-215ENST00000514313 CSH1P0DML2 217 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 CSH2P0DML3 217 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 ACSL1P33121 698 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 RARRES1P49788 294 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 C5orf22Q49AR2 442 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 C10orf76Q5T2E6 689 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 IL20RBQ6UXL0 311 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 AMIGO2Q86SJ2 522 aa7.85□□□□□ -1.15
NUP54-215ENST00000514313 TMEM116Q8NCL8 245 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms