RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ZNF534Q76KX8 674 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 OTOP3Q7RTS5 596 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 TMEM25Q86YD3 366 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 RELL1Q8IUW5 271 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 MFN1Q8IWA4 741 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 PDCD7Q8N8D1 485 aaKnown RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 UBLCP1Q8WVY7 318 aaPredicted RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 ZBTB9Q96C00 473 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 ASB16Q96NS5 453 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 SERPINB12Q96P63 405 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 SPON2Q9BUD6 331 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 MUC3BQ9H195 1237 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 VIPAS39Q9H9C1 493 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 KIF9Q9HAQ2 790 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 WNT6Q9Y6F9 365 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 KDELR3O43731 214 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 BANF1O75531 89 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 MZF1P28698 734 aaPredicted RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 GRIA1P42261 906 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 CTC1Q2NKJ3 1217 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 ZNF783Q6ZMS7 281 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 TEX26Q8N6G2 289 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 MCUQ8NE86 351 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 S1PR5Q9H228 398 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 ATP13A1Q9HD20 1204 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 SAYSD1Q9NPB0 183 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 EIF2B3Q9NR50 452 aaKnown RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 TBC1D14Q9P2M4 693 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 TTLL3Q9Y4R7 772 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 OR51B4Q9Y5P0 310 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 ACTL7AQ9Y615 435 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 TMEM265A0A087WTH1 108 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 E7ESA3 106 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 RENBPP51606 427 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 ARL4CP56559 192 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 SPDYCQ5MJ68 293 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 MARC1Q5VT66 337 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 CENPUQ71F23 418 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 CAND1Q86VP6 1230 aaKnown RBP18.96■□□□□ 0.63
CLN3-206ENST00000360019 IQCKQ8N0W5 287 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 SMARCD2Q92925 531 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 ALG14Q96F25 216 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 WDR83Q9BRX9 315 aaKnown RBP18.96■□□□□ 0.63
CLN3-206ENST00000360019 MLPHQ9BV36 600 aaPredicted RBP18.96■□□□□ 0.63
CLN3-206ENST00000360019 PHACTR1Q9C0D0 580 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 PABPC3Q9H361 631 aaKnown RBP18.96■□□□□ 0.63
CLN3-206ENST00000360019 GLOD4Q9HC38 313 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 BRWD1Q9NSI6 2320 aa18.96■□□□□ 0.63
CLN3-206ENST00000360019 RIPK2O43353 540 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 AVILO75366 819 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 CYBBP04839 570 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 CSKP41240 450 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 MAGEA4P43358 317 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 OXCT1P55809 520 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 TNK2Q07912 1038 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 PDIA2Q13087 525 aaKnown RBP18.95■□□□□ 0.62
CLN3-206ENST00000360019 LBRQ14739 615 aaKnown RBP18.95■□□□□ 0.62
CLN3-206ENST00000360019 TMCO4Q5TGY1 634 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 KCTD11Q693B1 232 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 KLHDC8BQ8IXV7 354 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 PDIK1LQ8N165 341 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.95■□□□□ 0.62
CLN3-206ENST00000360019 NSMCE1Q8WV22 266 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 OXNAD1Q96HP4 312 aaPredicted RBP18.95■□□□□ 0.62
CLN3-206ENST00000360019 FEM1AQ9BSK4 669 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 GDE1Q9NZC3 331 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 NINJ2Q9NZG7 142 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 MYOFQ9NZM1 2061 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 PENKP01210 267 aaPredicted RBP18.95■□□□□ 0.62
CLN3-206ENST00000360019 LTBRP36941 435 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 ETFBP38117 255 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 MMP13P45452 471 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 IFNAR2P48551 515 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 LMAN1P49257 510 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 ARF5P84085 180 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 CDK16Q00536 496 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 HP1BP3Q5SSJ5 553 aaPredicted RBP18.95■□□□□ 0.62
CLN3-206ENST00000360019 CFAP58Q5T655 872 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 PPP1R21Q6ZMI0 780 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 CEP128Q6ZU80 1094 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 TRMT10CQ7L0Y3 403 aaKnown RBP18.95■□□□□ 0.62
CLN3-206ENST00000360019 ADGRG2Q8IZP9 1017 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 AGGF1Q8N302 714 aaeCLIP18.95■□□□□ 0.62
CLN3-206ENST00000360019 SPATA22Q8NHS9 363 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 IRF7Q92985 503 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 OTUB2Q96DC9 234 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 C9orf72Q96LT7 481 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 ZNF599Q96NL3 588 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 ZIM3Q96PE6 472 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 FCRL5Q96RD9 977 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 NT5MQ9NPB1 228 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 SPHK2Q9NRA0 654 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 CLDND1Q9NY35 253 aa18.95■□□□□ 0.62
CLN3-206ENST00000360019 CBX4O00257 560 aa18.94■□□□□ 0.62
CLN3-206ENST00000360019 ALOX15BO15296 676 aa18.94■□□□□ 0.62
CLN3-206ENST00000360019 SNAP91O60641 907 aa18.94■□□□□ 0.62
CLN3-206ENST00000360019 NEBLO76041 1014 aa18.94■□□□□ 0.62
CLN3-206ENST00000360019 AP2A1O95782 977 aa18.94■□□□□ 0.62
CLN3-206ENST00000360019 FCARP24071 287 aa18.94■□□□□ 0.62
CLN3-206ENST00000360019 MAGEA3P43357 314 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms