RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 RFWD3Q6PCD5 774 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 GAREM2Q75VX8 874 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 FBF1Q8TES7 1133 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 USP33Q8TEY7 942 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 MYEOVQ96EZ4 313 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 ZFRQ96KR1 1074 aaKnown RBP18.52■□□□□ 0.56
VIM-201ENST00000224237 GCNAQ96QF7 691 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 EBNA1BP2Q99848 306 aaKnown RBP18.52■□□□□ 0.56
VIM-201ENST00000224237 LRRC3Q9BY71 257 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 SP110Q9HB58 689 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 CTNNAL1Q9UBT7 734 aa18.52■□□□□ 0.56
VIM-201ENST00000224237 AGO1Q9UL18 857 aaKnown RBP18.52■□□□□ 0.56
VIM-201ENST00000224237 AAR2Q9Y312 384 aaKnown RBP18.52■□□□□ 0.56
VIM-201ENST00000224237 ZFP37Q9Y6Q3 630 aaPredicted RBP18.52■□□□□ 0.56
VIM-201ENST00000224237 TCRBV9S1A1TA0A576 114 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 POC1B-GALNT4F8VUJ3 575 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 PSMD3O43242 534 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 NEBLO76041 1014 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 STX2P32856 288 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 GEMIN4P57678 1058 aaKnown RBP18.52■□□□□ 0.55
VIM-201ENST00000224237 HNRNPDQ14103 355 aaKnown RBP18.52■□□□□ 0.55
VIM-201ENST00000224237 PPM1LQ5SGD2 360 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 TXNDC8Q6A555 127 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 KLHDC8BQ8IXV7 354 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 HS6ST3Q8IZP7 471 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 MICAL1Q8TDZ2 1067 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 SLC22A17Q8WUG5 538 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 CFAP36Q96G28 342 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 XPO6Q96QU8 1125 aaKnown RBP18.52■□□□□ 0.55
VIM-201ENST00000224237 FCRL5Q96RD9 977 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 LRRC40Q9H9A6 602 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 ASAH2Q9NR71 780 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 SMPD4Q9NXE4 827 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 STOML2Q9UJZ1 356 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 MAD1L1Q9Y6D9 718 aa18.52■□□□□ 0.55
VIM-201ENST00000224237 MTCL1Q9Y4B5 1905 aaKnown RBP18.52■□□□□ 0.55
VIM-201ENST00000224237 DENND4CQ5VZ89 1909 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 CCDC85CA6NKD9 419 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 SDR42E2A6NKP2 422 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 A6NNZ2 444 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 NRG2O14511 850 aaPredicted RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 C1RP00736 705 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 HDCP19113 662 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 GCAP28676 217 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 IFNAR2P48551 515 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 ATP1A2P50993 1020 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 RENBPP51606 427 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 SMAD3P84022 425 aaKnown RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 TUBB8Q3ZCM7 444 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 ZNF354CQ86Y25 554 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 CCNJLQ8IV13 435 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 ARL14EPQ8N8R7 260 aaPredicted RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 NSMCE1Q8WV22 266 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 ZNF419Q96HQ0 510 aaPredicted RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 PRICKLE1Q96MT3 831 aaPredicted RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 SLC22A12Q96S37 553 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 CYP2S1Q96SQ9 504 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 CYTH2Q99418 400 aa18.51■□□□□ 0.55
VIM-201ENST00000224237 MLPHQ9BV36 600 aaPredicted RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 RBM22Q9NW64 420 aaKnown RBP eCLIP18.51■□□□□ 0.55
VIM-201ENST00000224237 YBX2Q9Y2T7 364 aaKnown RBP18.51■□□□□ 0.55
VIM-201ENST00000224237 CLDN11O75508 207 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 PEX11BO96011 259 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 PBX2P40425 430 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 CYP4F8P98187 520 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 IL10RBQ08334 325 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 COL13A1Q5TAT6 717 aaPredicted RBP18.5■□□□□ 0.55
VIM-201ENST00000224237 TTC39BQ5VTQ0 682 aaPredicted RBP18.5■□□□□ 0.55
VIM-201ENST00000224237 CHST9Q7L1S5 443 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 CFAP52Q8N1V2 620 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 MPP5Q8N3R9 675 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 ARHGEF2Q92974 986 aaKnown RBP18.5■□□□□ 0.55
VIM-201ENST00000224237 WBP2Q969T9 261 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 NAT9Q9BTE0 207 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 ZMYND15Q9H091 742 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 CERS4Q9HA82 394 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 GLOD4Q9HC38 313 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 PSMC3IPQ9P2W1 217 aaPredicted RBP18.5■□□□□ 0.55
VIM-201ENST00000224237 TBK1Q9UHD2 729 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 TTLL3Q9Y4R7 772 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 CPQQ9Y646 472 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 DOCK6Q96HP0 2047 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 A0A1B0GVM2 712 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 TCAF2A6NFQ2 919 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 AP3B1O00203 1094 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 TRDMT1O14717 391 aaKnown RBP18.5■□□□□ 0.55
VIM-201ENST00000224237 ANXA9O76027 345 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 HLA-DQB2P05538 268 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 PFKLP17858 780 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 NR1H3Q13133 447 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 SERINC3Q13530 473 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 SPARCL1Q14515 664 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 NAPEPLDQ6IQ20 393 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 OTOP3Q7RTS5 596 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 GSDMBQ8TAX9 411 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 STAMBPL1Q96FJ0 436 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 SAMD11Q96NU1 681 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 CAPS2Q9BXY5 557 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 ATXN3LQ9H3M9 355 aa18.5■□□□□ 0.55
VIM-201ENST00000224237 CNOT10Q9H9A5 744 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms