RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 CCT6BQ92526 530 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 RUBCNQ92622 972 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 MAP4K1Q92918 833 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 LRRC39Q96DD0 335 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 MTMR8Q96EF0 704 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 HES6Q96HZ4 224 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 TCEANC2Q96MN5 208 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 CCDC43Q96MW1 224 aaKnown RBP7.72□□□□□ -1.17
HDAC3-216ENST00000523088 GBP5Q96PP8 586 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 RANBP9Q96S59 729 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 MMS19Q96T76 1030 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 TREX2Q9BQ50 279 aaPredicted RBP7.72□□□□□ -1.17
HDAC3-216ENST00000523088 CHCHD6Q9BRQ6 235 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 GPR61Q9BZJ8 451 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 TRIM2Q9C040 744 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 DCLK3Q9C098 648 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 POLR1EQ9GZS1 481 aaKnown RBP7.72□□□□□ -1.17
HDAC3-216ENST00000523088 DPEP3Q9H4B8 488 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 IL23AQ9NPF7 189 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 PLSCR4Q9NRQ2 329 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 GIN1Q9NXP7 522 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 STMN3Q9NZ72 180 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 CYTH4Q9UIA0 394 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 GMEB2Q9UKD1 530 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 PCDHA12Q9UN75 941 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 FAF1Q9UNN5 650 aaPredicted RBP7.72□□□□□ -1.17
HDAC3-216ENST00000523088 ZNF175Q9Y473 711 aa7.72□□□□□ -1.17
HDAC3-216ENST00000523088 TRIP12Q14669 1992 aaPredicted RBP7.71□□□□□ -1.17
HDAC3-216ENST00000523088 GBF1Q92538 1859 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 A0A1B0GTQ1 180 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SMCO2A6NFE2 343 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TRPC5OSA6NMA1 111 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 E7EWF7 191 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TRIM77I1YAP6 450 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 CASC3O15234 703 aaKnown RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SHOXO15266 292 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 THAP12O43422 761 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 CDC123O75794 336 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 ALX3O95076 343 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 PLEKHA8P1O95397 391 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 NFICP08651 508 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 CCDC192P0DO97 292 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 CCNE1P24864 410 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 NMT1P30419 496 aaKnown RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SOX11P35716 441 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 WNT5AP41221 380 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 STAT5AP42229 794 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 GPD2P43304 727 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 GNG2P59768 71 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 ATP6V0D1P61421 351 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 ELF3P78545 371 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TAP1Q03518 808 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 RAD51Q06609 339 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 FCHO2Q0JRZ9 810 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 AP3B2Q13367 1082 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 PLD1Q13393 1074 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SPARCL1Q14515 664 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 NPTX1Q15818 432 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 DGKDQ16760 1214 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 ARHGAP44Q17R89 818 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TBRG1Q3YBR2 411 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 BMP2KLQ5H9B9 411 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TMEM67Q5HYA8 995 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 FAM209BQ5JX69 171 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 C9orf50Q5SZB4 431 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SPOPLQ6IQ16 392 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SLC30A6Q6NXT4 461 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 XRRA1Q6P2D8 792 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 OGFOD3Q6PK18 319 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 RUFY4Q6ZNE9 571 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 PATL1Q86TB9 770 aaKnown RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 KSR1Q8IVT5 923 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 CDKL3Q8IVW4 592 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 ZBED8Q8IZ13 594 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 REXO1Q8N1G1 1221 aaKnown RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 FBXL16Q8N461 479 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 AVL9Q8NBF6 648 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SLC17A8Q8NDX2 589 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SYTL5Q8TDW5 730 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 CENPIQ92674 756 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SYMPKQ92797 1274 aaKnown RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 INPP5DQ92835 1189 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 ABTB1Q969K4 478 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TMIGD2Q96BF3 282 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 LMF1Q96S06 567 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 TBCBQ99426 244 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 GAS2L1Q99501 681 aaPredicted RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 MENTQ9BUN1 341 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SPATA16Q9BXB7 569 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 NFKBIZQ9BYH8 718 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SLITRK6Q9H5Y7 841 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 RIOX1Q9H6W3 641 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 JMJD4Q9H9V9 463 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SP110Q9HB58 689 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SYTL2Q9HCH5 934 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 PXMP2Q9NR77 195 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 PDGFCQ9NRA1 345 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 DDX28Q9NUL7 540 aaKnown RBP7.71□□□□□ -1.18
HDAC3-216ENST00000523088 SYBUQ9NX95 663 aa7.71□□□□□ -1.18
HDAC3-216ENST00000523088 PTTG2Q9NZH5 202 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms