RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 HMOX1P09601 288 aa13.78□□□□□ -0.2
CUX1-221ENST00000622516 PDE4AP27815 886 aa13.78□□□□□ -0.2
CUX1-221ENST00000622516 NGEFQ8N5V2 710 aa13.78□□□□□ -0.2
CUX1-221ENST00000622516 POLKQ9UBT6 870 aa13.78□□□□□ -0.2
CUX1-221ENST00000622516 TCERG1O14776 1098 aaKnown RBP13.77□□□□□ -0.2
CUX1-221ENST00000622516 TMPOP42166 694 aaKnown RBP13.77□□□□□ -0.2
CUX1-221ENST00000622516 IQSEC2Q5JU85 1478 aa13.77□□□□□ -0.2
CUX1-221ENST00000622516 HDGFP51858 240 aaKnown RBP13.77□□□□□ -0.21
CUX1-221ENST00000622516 RARSP54136 660 aaKnown RBP13.77□□□□□ -0.21
CUX1-221ENST00000622516 PPIP5K1Q6PFW1 1433 aa13.77□□□□□ -0.21
CUX1-221ENST00000622516 WDR63Q8IWG1 891 aa13.77□□□□□ -0.21
CUX1-221ENST00000622516 MAPK8IP3Q9UPT6 1336 aa13.77□□□□□ -0.21
CUX1-221ENST00000622516 NRXN3Q9Y4C0 1643 aa13.77□□□□□ -0.21
CUX1-221ENST00000622516 TMEM2Q9UHN6 1383 aa13.77□□□□□ -0.21
CUX1-221ENST00000622516 RRS1Q15050 365 aaKnown RBP13.77□□□□□ -0.21
CUX1-221ENST00000622516 RGS3P49796 1198 aa13.76□□□□□ -0.21
CUX1-221ENST00000622516 RIPK4P57078 832 aa13.76□□□□□ -0.21
CUX1-221ENST00000622516 KDM2BQ8NHM5 1336 aa13.76□□□□□ -0.21
CUX1-221ENST00000622516 SETD1AO15047 1707 aaKnown RBP13.76□□□□□ -0.21
CUX1-221ENST00000622516 RTN4Q9NQC3 1192 aaKnown RBP13.76□□□□□ -0.21
CUX1-221ENST00000622516 TRIM35Q9UPQ4 493 aa13.76□□□□□ -0.21
CUX1-221ENST00000622516 PAK3O75914 559 aaPredicted RBP13.75□□□□□ -0.21
CUX1-221ENST00000622516 CCDC61Q9Y6R9 512 aa13.75□□□□□ -0.21
CUX1-221ENST00000622516 ROBO2Q9HCK4 1378 aa13.75□□□□□ -0.21
CUX1-221ENST00000622516 SOX12O15370 315 aa13.75□□□□□ -0.21
CUX1-221ENST00000622516 RLBP1P12271 317 aa13.75□□□□□ -0.21
CUX1-221ENST00000622516 PRR36Q9H6K5 1346 aa13.75□□□□□ -0.21
CUX1-221ENST00000622516 IGHDP01880 384 aa13.74□□□□□ -0.21
CUX1-221ENST00000622516 CCDC27Q2M243 656 aa13.74□□□□□ -0.21
CUX1-221ENST00000622516 PRKAR2BP31323 418 aa13.74□□□□□ -0.21
CUX1-221ENST00000622516 LAS1LQ9Y4W2 734 aaKnown RBP13.74□□□□□ -0.21
CUX1-221ENST00000622516 ANP32AP39687 249 aaKnown RBP13.73□□□□□ -0.21
CUX1-221ENST00000622516 EXOSC9Q06265 439 aaKnown RBP13.73□□□□□ -0.21
CUX1-221ENST00000622516 CENPQQ7L2Z9 268 aaPredicted RBP13.73□□□□□ -0.21
CUX1-221ENST00000622516 PHACTR3Q96KR7 559 aa13.73□□□□□ -0.21
CUX1-221ENST00000622516 BACH2Q9BYV9 841 aa13.73□□□□□ -0.21
CUX1-221ENST00000622516 MYH16Q9H6N6 1097 aa13.73□□□□□ -0.21
CUX1-221ENST00000622516 COL3A1P02461 1466 aaPredicted RBP13.73□□□□□ -0.21
CUX1-221ENST00000622516 THUMPD2Q9BTF0 503 aaKnown RBP13.73□□□□□ -0.21
CUX1-221ENST00000622516 DLC1Q96QB1 1528 aa13.72□□□□□ -0.21
CUX1-221ENST00000622516 PDE3AQ14432 1141 aa13.71□□□□□ -0.22
CUX1-221ENST00000622516 COG3Q96JB2 828 aa13.71□□□□□ -0.22
CUX1-221ENST00000622516 PMFBP1Q8TBY8 1022 aa13.7□□□□□ -0.22
CUX1-221ENST00000622516 ADAMTS13Q76LX8 1427 aa13.7□□□□□ -0.22
CUX1-221ENST00000622516 PNPLA6Q8IY17 1366 aa13.7□□□□□ -0.22
CUX1-221ENST00000622516 MAP2P11137 1827 aaKnown RBP13.7□□□□□ -0.22
CUX1-221ENST00000622516 UBR1Q8IWV7 1749 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 CPSF1Q10570 1443 aaKnown RBP13.69□□□□□ -0.22
CUX1-221ENST00000622516 AMOTL2Q9Y2J4 779 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 EID1Q9Y6B2 187 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 RSPH6AQ9H0K4 717 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 NOP58Q9Y2X3 529 aaKnown RBP13.69□□□□□ -0.22
CUX1-221ENST00000622516 MED14O60244 1454 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 ATP7BP35670 1465 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 CPS1P31327 1500 aa13.69□□□□□ -0.22
CUX1-221ENST00000622516 IPO9Q96P70 1041 aaKnown RBP13.68□□□□□ -0.22
CUX1-221ENST00000622516 SMC4Q9NTJ3 1288 aa13.68□□□□□ -0.22
CUX1-221ENST00000622516 KIF20BQ96Q89 1820 aa13.68□□□□□ -0.22
CUX1-221ENST00000622516 FCHSD2O94868 740 aa13.68□□□□□ -0.22
CUX1-221ENST00000622516 MS4A1P11836 297 aa13.68□□□□□ -0.22
CUX1-221ENST00000622516 ACEP12821 1306 aa13.68□□□□□ -0.22
CUX1-221ENST00000622516 SSH1Q8WYL5 1049 aa13.68□□□□□ -0.22
CUX1-221ENST00000622516 ANKRD26Q9UPS8 1709 aa13.67□□□□□ -0.22
CUX1-221ENST00000622516 RBM33Q96EV2 1170 aaKnown RBP13.67□□□□□ -0.22
CUX1-221ENST00000622516 PCDHB15Q9Y5E8 787 aa13.67□□□□□ -0.22
CUX1-221ENST00000622516 EDC4Q6P2E9 1401 aaKnown RBP13.67□□□□□ -0.22
CUX1-221ENST00000622516 ELL2O00472 640 aaPredicted RBP13.67□□□□□ -0.22
CUX1-221ENST00000622516 IL13P35225 146 aa13.66□□□□□ -0.22
CUX1-221ENST00000622516 FAM135BQ49AJ0 1406 aa13.66□□□□□ -0.22
CUX1-221ENST00000622516 ADGRB2O60241 1585 aa13.66□□□□□ -0.22
CUX1-221ENST00000622516 PTPRUQ92729 1446 aa13.66□□□□□ -0.22
CUX1-221ENST00000622516 NEFMP07197 916 aa13.66□□□□□ -0.22
CUX1-221ENST00000622516 FAM83GA6ND36 823 aa13.65□□□□□ -0.22
CUX1-221ENST00000622516 NCBP3Q53F19 620 aaKnown RBP13.65□□□□□ -0.22
CUX1-221ENST00000622516 FTSJ3Q8IY81 847 aaKnown RBP13.65□□□□□ -0.22
CUX1-221ENST00000622516 DCTN1Q14203 1278 aa13.65□□□□□ -0.22
CUX1-221ENST00000622516 ZBTB47Q9UFB7 747 aaPredicted RBP13.65□□□□□ -0.22
CUX1-221ENST00000622516 AEBP1Q8IUX7 1158 aa13.65□□□□□ -0.22
CUX1-221ENST00000622516 SIRT1Q96EB6 747 aa13.65□□□□□ -0.22
CUX1-221ENST00000622516 LRRC7Q96NW7 1537 aa13.64□□□□□ -0.23
CUX1-221ENST00000622516 TECPR2O15040 1411 aa13.64□□□□□ -0.23
CUX1-221ENST00000622516 PLEKHG1Q9ULL1 1385 aa13.64□□□□□ -0.23
CUX1-221ENST00000622516 ZKSCAN2Q63HK3 967 aa13.64□□□□□ -0.23
CUX1-221ENST00000622516 NOB1Q9ULX3 412 aaKnown RBP13.64□□□□□ -0.23
CUX1-221ENST00000622516 NBR1Q14596 966 aa13.64□□□□□ -0.23
CUX1-221ENST00000622516 TTC21BQ7Z4L5 1316 aa13.63□□□□□ -0.23
CUX1-221ENST00000622516 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.63□□□□□ -0.23
CUX1-221ENST00000622516 ZNF692Q9BU19 519 aaPredicted RBP13.63□□□□□ -0.23
CUX1-221ENST00000622516 PNNQ9H307 717 aaKnown RBP13.63□□□□□ -0.23
CUX1-221ENST00000622516 TRIM27P14373 513 aa13.63□□□□□ -0.23
CUX1-221ENST00000622516 HSP90AB2PQ58FF8 381 aa13.62□□□□□ -0.23
CUX1-221ENST00000622516 DZIP1LQ8IYY4 767 aaKnown RBP13.62□□□□□ -0.23
CUX1-221ENST00000622516 NFE2L2Q16236 605 aa13.62□□□□□ -0.23
CUX1-221ENST00000622516 NUTM2GQ5VZR2 741 aa13.62□□□□□ -0.23
CUX1-221ENST00000622516 THEMISQ8N1K5 641 aaPredicted RBP13.62□□□□□ -0.23
CUX1-221ENST00000622516 ITPRIPQ8IWB1 547 aa13.62□□□□□ -0.23
CUX1-221ENST00000622516 CDC42BPGQ6DT37 1551 aa13.61□□□□□ -0.23
CUX1-221ENST00000622516 C8orf34Q49A92 452 aa13.61□□□□□ -0.23
CUX1-221ENST00000622516 SULT6B1Q6IMI4 303 aa13.61□□□□□ -0.23
CUX1-221ENST00000622516 TSPYL6Q8N831 410 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms