RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-228ENST00000617771 GJD4Q96KN9 370 aaPredicted RBP36.06■■■■□ 3.36
VEGFA-228ENST00000617771 ACEP12821 1306 aa36.06■■■■□ 3.36
VEGFA-228ENST00000617771 TONSLQ96HA7 1378 aa36.03■■■■□ 3.36
VEGFA-228ENST00000617771 NBPF8Q3BBV2 869 aa36.02■■■■□ 3.36
VEGFA-228ENST00000617771 CABP2Q9NPB3 220 aa36.02■■■■□ 3.36
VEGFA-228ENST00000617771 PPIP5K1Q6PFW1 1433 aa36■■■■□ 3.35
VEGFA-228ENST00000617771 PLCH1Q4KWH8 1693 aa36■■■■□ 3.35
VEGFA-228ENST00000617771 NWD2Q9ULI1 1742 aa36■■■■□ 3.35
VEGFA-228ENST00000617771 FAM83GA6ND36 823 aa35.99■■■■□ 3.35
VEGFA-228ENST00000617771 EVC2Q86UK5 1308 aa35.98■■■■□ 3.35
VEGFA-228ENST00000617771 RALGAPBQ86X10 1494 aa35.98■■■■□ 3.35
VEGFA-228ENST00000617771 VPS72Q15906 364 aa35.96■■■■□ 3.35
VEGFA-228ENST00000617771 ATAD2Q6PL18 1390 aa35.96■■■■□ 3.35
VEGFA-228ENST00000617771 CRYBG1Q9Y4K1 1723 aa35.94■■■■□ 3.34
VEGFA-228ENST00000617771 GLI3P10071 1580 aa35.93■■■■□ 3.34
VEGFA-228ENST00000617771 COL14A1Q05707 1796 aaKnown RBP35.92■■■■□ 3.34
VEGFA-228ENST00000617771 CCDC9Q9Y3X0 531 aaKnown RBP35.91■■■■□ 3.34
VEGFA-228ENST00000617771 BTG4Q9NY30 223 aa35.9■■■■□ 3.34
VEGFA-228ENST00000617771 CARD11Q9BXL7 1154 aa35.89■■■■□ 3.34
VEGFA-228ENST00000617771 CABP1Q9NZU7 370 aa35.89■■■■□ 3.34
VEGFA-228ENST00000617771 BRD4O60885 1362 aaPredicted RBP35.89■■■■□ 3.34
VEGFA-228ENST00000617771 NUTM2GQ5VZR2 741 aa35.88■■■■□ 3.33
VEGFA-228ENST00000617771 ABTB2Q8N961 1025 aa35.88■■■■□ 3.33
VEGFA-228ENST00000617771 PRDM11Q9NQV5 511 aa35.88■■■■□ 3.33
VEGFA-228ENST00000617771 PHRF1Q9P1Y6 1649 aaKnown RBP35.86■■■■□ 3.33
VEGFA-228ENST00000617771 NRAPQ86VF7 1730 aa35.85■■■■□ 3.33
VEGFA-228ENST00000617771 KIAA0232Q92628 1395 aa35.82■■■■□ 3.32
VEGFA-228ENST00000617771 SBNO2Q9Y2G9 1366 aa35.81■■■■□ 3.32
VEGFA-228ENST00000617771 USP6P35125 1406 aa35.81■■■■□ 3.32
VEGFA-228ENST00000617771 NLRP13Q86W25 1043 aa35.8■■■■□ 3.32
VEGFA-228ENST00000617771 SEPT12Q8IYM1 358 aa35.79■■■■□ 3.32
VEGFA-228ENST00000617771 ONECUT3O60422 494 aaPredicted RBP35.78■■■■□ 3.32
VEGFA-228ENST00000617771 ZC3H6P61129 1189 aaKnown RBP35.78■■■■□ 3.32
VEGFA-228ENST00000617771 USP19O94966 1318 aa35.78■■■■□ 3.32
VEGFA-228ENST00000617771 CHRNA2Q15822 529 aa35.75■■■■□ 3.31
VEGFA-228ENST00000617771 NRKQ7Z2Y5 1582 aa35.75■■■■□ 3.31
VEGFA-228ENST00000617771 ZNF692Q9BU19 519 aaPredicted RBP35.74■■■■□ 3.31
VEGFA-228ENST00000617771 A0A0G2JS52 829 aa35.71■■■■□ 3.31
VEGFA-228ENST00000617771 MYT1Q01538 1121 aa35.71■■■■□ 3.31
VEGFA-228ENST00000617771 CCDC125Q86Z20 511 aa35.71■■■■□ 3.31
VEGFA-228ENST00000617771 CPDO75976 1380 aa35.71■■■■□ 3.31
VEGFA-228ENST00000617771 GCP02774 474 aa35.7■■■■□ 3.31
VEGFA-228ENST00000617771 FAM98CQ17RN3 349 aaKnown RBP35.7■■■■□ 3.31
VEGFA-228ENST00000617771 SPATA31A5Q5VU36 1347 aa35.7■■■■□ 3.31
VEGFA-228ENST00000617771 SSH2Q76I76 1423 aa35.7■■■■□ 3.31
VEGFA-228ENST00000617771 SPATA31A7Q8IWB4 1347 aa35.7■■■■□ 3.31
VEGFA-228ENST00000617771 NLRP6P59044 892 aa35.69■■■■□ 3.3
VEGFA-228ENST00000617771 BRWD3Q6RI45 1802 aa35.68■■■■□ 3.3
VEGFA-228ENST00000617771 KRT27Q7Z3Y8 459 aa35.67■■■■□ 3.3
VEGFA-228ENST00000617771 STRN4Q9NRL3 753 aa35.66■■■■□ 3.3
VEGFA-228ENST00000617771 AKAP12Q02952 1782 aa35.64■■■■□ 3.3
VEGFA-228ENST00000617771 TTC21BQ7Z4L5 1316 aa35.64■■■■□ 3.3
VEGFA-228ENST00000617771 EVA1CP58658 441 aa35.64■■■■□ 3.3
VEGFA-228ENST00000617771 CPSF1Q10570 1443 aaKnown RBP35.64■■■■□ 3.3
VEGFA-228ENST00000617771 TTC21AQ8NDW8 1320 aa35.62■■■■□ 3.29
VEGFA-228ENST00000617771 EP400Q96L91 3159 aa35.62■■■■□ 3.29
VEGFA-228ENST00000617771 KTN1Q86UP2 1357 aaKnown RBP35.62■■■■□ 3.29
VEGFA-228ENST00000617771 SLIT3O75094 1523 aa35.62■■■■□ 3.29
VEGFA-228ENST00000617771 PIK3C2AO00443 1686 aa35.62■■■■□ 3.29
VEGFA-228ENST00000617771 SPATA31A1Q5TZJ5 1347 aa35.61■■■■□ 3.29
VEGFA-228ENST00000617771 BLMP54132 1417 aaPredicted RBP35.59■■■■□ 3.29
VEGFA-228ENST00000617771 LMO7Q8WWI1 1683 aa35.59■■■■□ 3.29
VEGFA-228ENST00000617771 CAMTA1Q9Y6Y1 1673 aa35.59■■■■□ 3.29
VEGFA-228ENST00000617771 CLSPNQ9HAW4 1339 aa35.57■■■■□ 3.29
VEGFA-228ENST00000617771 SLC24A1O60721 1099 aa35.57■■■■□ 3.28
VEGFA-228ENST00000617771 TMC1Q8TDI8 760 aa35.57■■■■□ 3.28
VEGFA-228ENST00000617771 PUS7Q96PZ0 661 aaKnown RBP35.57■■■■□ 3.28
VEGFA-228ENST00000617771 PCGF6Q9BYE7 350 aa35.57■■■■□ 3.28
VEGFA-228ENST00000617771 ST20-MTHFSA0A0A6YYL1 179 aa35.55■■■■□ 3.28
VEGFA-228ENST00000617771 THSD7AQ9UPZ6 1657 aa35.55■■■■□ 3.28
VEGFA-228ENST00000617771 ZBTB7CA1YPR0 619 aa35.54■■■■□ 3.28
VEGFA-228ENST00000617771 SF3B2Q13435 895 aaKnown RBP35.53■■■■□ 3.28
VEGFA-228ENST00000617771 MON2Q7Z3U7 1717 aa35.53■■■■□ 3.28
VEGFA-228ENST00000617771 HDGFL2Q7Z4V5 671 aaPredicted RBP35.53■■■■□ 3.28
VEGFA-228ENST00000617771 KCNH5Q8NCM2 988 aa35.53■■■■□ 3.28
VEGFA-228ENST00000617771 TIMELESSQ9UNS1 1208 aa35.53■■■■□ 3.28
VEGFA-228ENST00000617771 LARP1Q6PKG0 1096 aaKnown RBP35.52■■■■□ 3.28
VEGFA-228ENST00000617771 TESK2Q96S53 571 aa35.52■■■■□ 3.28
VEGFA-228ENST00000617771 USP35Q9P2H5 1018 aa35.52■■■■□ 3.28
VEGFA-228ENST00000617771 AATKQ6ZMQ8 1374 aa35.51■■■■□ 3.28
VEGFA-228ENST00000617771 COL5A2P05997 1499 aaPredicted RBP35.5■■■■□ 3.27
VEGFA-228ENST00000617771 CD163L1Q9NR16 1453 aa35.5■■■■□ 3.27
VEGFA-228ENST00000617771 SLC12A5Q9H2X9 1139 aa35.49■■■■□ 3.27
VEGFA-228ENST00000617771 BARGINQ6ZT62 677 aa35.48■■■■□ 3.27
VEGFA-228ENST00000617771 TERF2IPQ9NYB0 399 aa35.48■■■■□ 3.27
VEGFA-228ENST00000617771 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.47■■■■□ 3.27
VEGFA-228ENST00000617771 TCP11L2Q8N4U5 519 aa35.46■■■■□ 3.27
VEGFA-228ENST00000617771 THRAP3Q9Y2W1 955 aaKnown RBP35.45■■■■□ 3.27
VEGFA-228ENST00000617771 USP47Q96K76 1375 aa35.45■■■■□ 3.27
VEGFA-228ENST00000617771 NINLQ9Y2I6 1382 aa35.45■■■■□ 3.27
VEGFA-228ENST00000617771 EDC4Q6P2E9 1401 aaKnown RBP35.43■■■■□ 3.26
VEGFA-228ENST00000617771 SOX12O15370 315 aa35.43■■■■□ 3.26
VEGFA-228ENST00000617771 ARHGEF25Q86VW2 580 aa35.43■■■■□ 3.26
VEGFA-228ENST00000617771 CRB1P82279 1406 aa35.42■■■■□ 3.26
VEGFA-228ENST00000617771 USP31Q70CQ4 1352 aa35.42■■■■□ 3.26
VEGFA-228ENST00000617771 A0A1W2PP64 1363 aa35.41■■■■□ 3.26
VEGFA-228ENST00000617771 NFAT5O94916 1531 aa35.39■■■■□ 3.26
VEGFA-228ENST00000617771 FAM182BQ5T319 152 aa35.39■■■■□ 3.26
VEGFA-228ENST00000617771 DEFB132Q7Z7B7 95 aa35.39■■■■□ 3.26
VEGFA-228ENST00000617771 ZRANB1Q9UGI0 708 aa35.39■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms