RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 RAB3GAP1Q15042 981 aa16.33■□□□□ 0.2
MSH6-214ENST00000616033 ASXL2Q76L83 1435 aa16.32■□□□□ 0.2
MSH6-214ENST00000616033 TPM2P07951 284 aa16.32■□□□□ 0.2
MSH6-214ENST00000616033 CCDC173Q0VFZ6 552 aa16.32■□□□□ 0.2
MSH6-214ENST00000616033 TBC1D9Q6ZT07 1266 aa16.32■□□□□ 0.2
MSH6-214ENST00000616033 SHANK2Q9UPX8 1470 aa16.32■□□□□ 0.2
MSH6-214ENST00000616033 SKOR2Q2VWA4 1001 aaPredicted RBP16.32■□□□□ 0.2
MSH6-214ENST00000616033 BAG4O95429 457 aaKnown RBP16.31■□□□□ 0.2
MSH6-214ENST00000616033 PDIA4P13667 645 aaKnown RBP16.31■□□□□ 0.2
MSH6-214ENST00000616033 PDCL3Q9H2J4 239 aa16.31■□□□□ 0.2
MSH6-214ENST00000616033 ZCCHC11Q5TAX3 1644 aaKnown RBP16.3■□□□□ 0.2
MSH6-214ENST00000616033 UQCRHLA0A096LP55 91 aa16.3■□□□□ 0.2
MSH6-214ENST00000616033 UQCRHP07919 91 aa16.3■□□□□ 0.2
MSH6-214ENST00000616033 PLCB2Q00722 1185 aa16.3■□□□□ 0.2
MSH6-214ENST00000616033 JARID2Q92833 1246 aaPredicted RBP16.3■□□□□ 0.2
MSH6-214ENST00000616033 IGSF3O75054 1194 aa16.29■□□□□ 0.2
MSH6-214ENST00000616033 FANCAO15360 1455 aa16.29■□□□□ 0.2
MSH6-214ENST00000616033 SMC5Q8IY18 1101 aa16.29■□□□□ 0.2
MSH6-214ENST00000616033 TMPOP42166 694 aaKnown RBP16.29■□□□□ 0.2
MSH6-214ENST00000616033 SRPK2P78362 688 aaKnown RBP16.29■□□□□ 0.2
MSH6-214ENST00000616033 PAXIP1Q6ZW49 1069 aaPredicted RBP16.29■□□□□ 0.2
MSH6-214ENST00000616033 NGEFQ8N5V2 710 aa16.29■□□□□ 0.2
MSH6-214ENST00000616033 FAM177BA6PVY3 158 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 PRIM1P49642 420 aaKnown RBP16.28■□□□□ 0.2
MSH6-214ENST00000616033 PLPPR3Q6T4P5 718 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 TSC1Q92574 1164 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 RBSNQ9H1K0 784 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 PRDM4Q9UKN5 801 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 CLASP1Q7Z460 1538 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 MYO5CQ9NQX4 1742 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 MLECQ14165 292 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 SHROOM2Q13796 1616 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 HMOX1P09601 288 aa16.28■□□□□ 0.2
MSH6-214ENST00000616033 PREX2Q70Z35 1606 aa16.27■□□□□ 0.2
MSH6-214ENST00000616033 ATAD2Q6PL18 1390 aa16.27■□□□□ 0.2
MSH6-214ENST00000616033 SYCE3A1L190 88 aa16.27■□□□□ 0.2
MSH6-214ENST00000616033 NUCB1Q02818 461 aa16.27■□□□□ 0.2
MSH6-214ENST00000616033 C16orf71Q8IYS4 520 aaPredicted RBP16.27■□□□□ 0.2
MSH6-214ENST00000616033 HDAC1Q13547 482 aaPredicted RBP16.27■□□□□ 0.19
MSH6-214ENST00000616033 ZGPATQ8N5A5 531 aaKnown RBP16.27■□□□□ 0.19
MSH6-214ENST00000616033 ZBTB40Q9NUA8 1239 aa16.27■□□□□ 0.19
MSH6-214ENST00000616033 RTEL1-TNFRSF6BF6WH68 1400 aa16.27■□□□□ 0.19
MSH6-214ENST00000616033 IPO8O15397 1037 aaKnown RBP16.26■□□□□ 0.19
MSH6-214ENST00000616033 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.26■□□□□ 0.19
MSH6-214ENST00000616033 POLR3AO14802 1390 aaPredicted RBP16.26■□□□□ 0.19
MSH6-214ENST00000616033 KIF2CQ99661 725 aa16.26■□□□□ 0.19
MSH6-214ENST00000616033 RBM25P49756 843 aaKnown RBP16.26■□□□□ 0.19
MSH6-214ENST00000616033 ZSCAN23Q3MJ62 389 aa16.26■□□□□ 0.19
MSH6-214ENST00000616033 VIRMAQ69YN4 1812 aaKnown RBP16.25■□□□□ 0.19
MSH6-214ENST00000616033 ADGRL1O94910 1474 aa16.25■□□□□ 0.19
MSH6-214ENST00000616033 EIF2AK4Q9P2K8 1649 aaKnown RBP16.24■□□□□ 0.19
MSH6-214ENST00000616033 OFD1O75665 1012 aa16.24■□□□□ 0.19
MSH6-214ENST00000616033 SNX21Q969T3 373 aa16.24■□□□□ 0.19
MSH6-214ENST00000616033 ZNF830Q96NB3 372 aaPredicted RBP16.24■□□□□ 0.19
MSH6-214ENST00000616033 NAP1L2Q9ULW6 460 aaPredicted RBP16.23■□□□□ 0.19
MSH6-214ENST00000616033 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.23■□□□□ 0.19
MSH6-214ENST00000616033 CIZ1Q9ULV3 898 aaPredicted RBP16.23■□□□□ 0.19
MSH6-214ENST00000616033 ARHGEF5Q12774 1597 aa16.23■□□□□ 0.19
MSH6-214ENST00000616033 KANK1Q14678 1352 aa16.23■□□□□ 0.19
MSH6-214ENST00000616033 SMARCA5O60264 1052 aaPredicted RBP16.23■□□□□ 0.19
MSH6-214ENST00000616033 DTNBO60941 627 aa16.23■□□□□ 0.19
MSH6-214ENST00000616033 TRIM35Q9UPQ4 493 aa16.23■□□□□ 0.19
MSH6-214ENST00000616033 KLHL40Q2TBA0 621 aa16.22■□□□□ 0.19
MSH6-214ENST00000616033 ISY1Q9ULR0 285 aaKnown RBP16.22■□□□□ 0.19
MSH6-214ENST00000616033 FAM69CQ0P6D2 419 aa16.22■□□□□ 0.19
MSH6-214ENST00000616033 GDPD2Q9HCC8 539 aa16.22■□□□□ 0.19
MSH6-214ENST00000616033 ERVK-7P63135 1459 aa16.22■□□□□ 0.19
MSH6-214ENST00000616033 TSPYL6Q8N831 410 aa16.22■□□□□ 0.19
MSH6-214ENST00000616033 OTUD7AQ8TE49 926 aaPredicted RBP16.22■□□□□ 0.19
MSH6-214ENST00000616033 CD109Q6YHK3 1445 aa16.21■□□□□ 0.19
MSH6-214ENST00000616033 DDIT3P35638 169 aa16.21■□□□□ 0.19
MSH6-214ENST00000616033 NSFL1CQ9UNZ2 370 aaKnown RBP16.21■□□□□ 0.19
MSH6-214ENST00000616033 SYNMO15061 1565 aa16.2■□□□□ 0.18
MSH6-214ENST00000616033 BMP2KLQ5H9B9 411 aa16.2■□□□□ 0.18
MSH6-214ENST00000616033 KIF16BQ96L93 1317 aa16.19■□□□□ 0.18
MSH6-214ENST00000616033 NPC1L1Q9UHC9 1359 aa16.19■□□□□ 0.18
MSH6-214ENST00000616033 UGGT1Q9NYU2 1555 aa16.19■□□□□ 0.18
MSH6-214ENST00000616033 CDC45O75419 566 aa16.19■□□□□ 0.18
MSH6-214ENST00000616033 C17orf53Q8N3J3 647 aaPredicted RBP16.19■□□□□ 0.18
MSH6-214ENST00000616033 MINK1Q8N4C8 1332 aaPredicted RBP16.18■□□□□ 0.18
MSH6-214ENST00000616033 PRKAR2BP31323 418 aa16.18■□□□□ 0.18
MSH6-214ENST00000616033 PPP1R9BQ96SB3 815 aa16.18■□□□□ 0.18
MSH6-214ENST00000616033 CFAP65Q6ZU64 1925 aaKnown RBP16.18■□□□□ 0.18
MSH6-214ENST00000616033 UHRF1BP1LA0JNW5 1464 aa16.18■□□□□ 0.18
MSH6-214ENST00000616033 TSHZ3Q63HK5 1081 aa16.17■□□□□ 0.18
MSH6-214ENST00000616033 ZBTB22O15209 634 aa16.17■□□□□ 0.18
MSH6-214ENST00000616033 PHF23Q9BUL5 403 aaPredicted RBP16.17■□□□□ 0.18
MSH6-214ENST00000616033 DCTN1Q14203 1278 aa16.17■□□□□ 0.18
MSH6-214ENST00000616033 LMBRD1Q9NUN5 540 aa16.17■□□□□ 0.18
MSH6-214ENST00000616033 DUOX2Q9NRD8 1548 aa16.17■□□□□ 0.18
MSH6-214ENST00000616033 CBX1P83916 185 aa16.16■□□□□ 0.18
MSH6-214ENST00000616033 GPT2Q8TD30 523 aa16.16■□□□□ 0.18
MSH6-214ENST00000616033 CHMP4AQ9BY43 222 aa16.16■□□□□ 0.18
MSH6-214ENST00000616033 GSPT1P15170 499 aaKnown RBP16.16■□□□□ 0.18
MSH6-214ENST00000616033 PTMSP20962 102 aa16.16■□□□□ 0.18
MSH6-214ENST00000616033 TMEM63CQ9P1W3 806 aa16.16■□□□□ 0.18
MSH6-214ENST00000616033 DIAPH1O60610 1272 aaKnown RBP16.15■□□□□ 0.18
MSH6-214ENST00000616033 CCDC27Q2M243 656 aa16.15■□□□□ 0.18
MSH6-214ENST00000616033 SIRT2Q8IXJ6 389 aa16.15■□□□□ 0.18
MSH6-214ENST00000616033 KDM5AP29375 1690 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 177.6 ms