RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, human

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-233	ENST00000610733	SAMD9	Q5K651	1589 aa		11.79	□□□□□ -0.52
TPM1-233	ENST00000610733	NCKAP5L	Q9HCH0	1330 aa		11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	FOSB	P53539	338 aa		11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	CYB5RL	Q6IPT4	315 aa		11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	TBC1D9	Q6ZT07	1266 aa		11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	CFAP65	Q6ZU64	1925 aa	Known RBP	11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	DRC7	Q8IY82	874 aa		11.78	□□□□□ -0.52
TPM1-233	ENST00000610733	NME9	Q86XW9	330 aa		11.77	□□□□□ -0.52
TPM1-233	ENST00000610733	NGEF	Q8N5V2	710 aa		11.77	□□□□□ -0.52
TPM1-233	ENST00000610733	STK31	Q9BXU1	1019 aa		11.77	□□□□□ -0.52
TPM1-233	ENST00000610733	IL1RAPL2	Q9NP60	686 aa		11.77	□□□□□ -0.52
TPM1-233	ENST00000610733	NOS1	P29475	1434 aa		11.77	□□□□□ -0.52
TPM1-233	ENST00000610733		K7ELQ4	463 aa	Predicted RBP	11.77	□□□□□ -0.52
TPM1-233	ENST00000610733	CHMP4B	Q9H444	224 aa	Known RBP	11.77	□□□□□ -0.52
TPM1-233	ENST00000610733	CDC45	O75419	566 aa		11.77	□□□□□ -0.53
TPM1-233	ENST00000610733	SLC4A2	P04920	1241 aa		11.77	□□□□□ -0.53
TPM1-233	ENST00000610733	AMPH	P49418	695 aa		11.77	□□□□□ -0.53
TPM1-233	ENST00000610733	KIAA1211	Q6ZU35	1233 aa		11.77	□□□□□ -0.53
TPM1-233	ENST00000610733	FBXW7	Q969H0	707 aa		11.77	□□□□□ -0.53
TPM1-233	ENST00000610733	XPC	Q01831	940 aa	Predicted RBP	11.77	□□□□□ -0.53
TPM1-233	ENST00000610733	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.76	□□□□□ -0.53
TPM1-233	ENST00000610733	PHACTR3	Q96KR7	559 aa		11.76	□□□□□ -0.53
TPM1-233	ENST00000610733	TRAPPC8	Q9Y2L5	1435 aa		11.76	□□□□□ -0.53
TPM1-233	ENST00000610733	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.76	□□□□□ -0.53
TPM1-233	ENST00000610733	NGDN	Q8NEJ9	315 aa	Known RBP	11.76	□□□□□ -0.53
TPM1-233	ENST00000610733	GAS2L2	Q8NHY3	880 aa		11.76	□□□□□ -0.53
TPM1-233	ENST00000610733	KDM5C	P41229	1560 aa		11.75	□□□□□ -0.53
TPM1-233	ENST00000610733	SYCE3	A1L190	88 aa		11.75	□□□□□ -0.53
TPM1-233	ENST00000610733	MCC	P23508	829 aa		11.75	□□□□□ -0.53
TPM1-233	ENST00000610733	GCC2	Q8IWJ2	1684 aa		11.75	□□□□□ -0.53
TPM1-233	ENST00000610733	GOLGA6L4	A6NEF3	574 aa		11.75	□□□□□ -0.53
TPM1-233	ENST00000610733	IDI1	Q13907	227 aa		11.75	□□□□□ -0.53
TPM1-233	ENST00000610733	SCAF11	Q99590	1463 aa	Known RBP	11.74	□□□□□ -0.53
TPM1-233	ENST00000610733	UHRF1BP1	Q6BDS2	1440 aa		11.74	□□□□□ -0.53
TPM1-233	ENST00000610733	TSPYL4	Q9UJ04	414 aa		11.74	□□□□□ -0.53
TPM1-233	ENST00000610733	KIAA0556	O60303	1618 aa		11.74	□□□□□ -0.53
TPM1-233	ENST00000610733	GNAI1	P63096	354 aa		11.74	□□□□□ -0.53
TPM1-233	ENST00000610733	USP19	O94966	1318 aa		11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	AAMP	Q13685	434 aa		11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	RBM33	Q96EV2	1170 aa	Known RBP	11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	LRRIQ1	Q96JM4	1722 aa		11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	KIF21A	Q7Z4S6	1674 aa		11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	VPS37C	A5D8V6	355 aa	Predicted RBP	11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	CD2BP2	O95400	341 aa	Known RBP	11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	INTS3	Q68E01	1043 aa	Known RBP	11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	ZGPAT	Q8N5A5	531 aa	Known RBP	11.73	□□□□□ -0.53
TPM1-233	ENST00000610733	FYB1	O15117	783 aa		11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	FIBP	O43427	364 aa		11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	HMMR	O75330	724 aa		11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	C8orf58	Q8NAV2	365 aa		11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	API5	Q9BZZ5	524 aa	Known RBP	11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	PRDM10	Q9NQV6	1147 aa		11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	ASXL1	Q8IXJ9	1541 aa		11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	BLM	P54132	1417 aa	Predicted RBP	11.72	□□□□□ -0.53
TPM1-233	ENST00000610733	NCBP3	Q53F19	620 aa	Known RBP	11.71	□□□□□ -0.53
TPM1-233	ENST00000610733	TAF7L	Q5H9L4	462 aa		11.71	□□□□□ -0.53
TPM1-233	ENST00000610733	AEBP1	Q8IUX7	1158 aa		11.71	□□□□□ -0.53
TPM1-233	ENST00000610733	ZMYM4	Q5VZL5	1548 aa		11.71	□□□□□ -0.53
TPM1-233	ENST00000610733	KIAA2012	Q0VF49	1180 aa		11.71	□□□□□ -0.54
TPM1-233	ENST00000610733	PKP1	Q13835	747 aa		11.71	□□□□□ -0.54
TPM1-233	ENST00000610733	GAS2L3	Q86XJ1	694 aa		11.71	□□□□□ -0.54
TPM1-233	ENST00000610733	ZNF521	Q96K83	1311 aa		11.71	□□□□□ -0.54
TPM1-233	ENST00000610733	PPFIA3	O75145	1194 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	SPC24	Q8NBT2	197 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	ZNF830	Q96NB3	372 aa	Predicted RBP	11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	MBIP	Q9NS73	344 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	ABCA5	Q8WWZ7	1642 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	REC8	O95072	547 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	FAM177B	A6PVY3	158 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	NUTM1	Q86Y26	1132 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	ADAMTS12	P58397	1594 aa		11.7	□□□□□ -0.54
TPM1-233	ENST00000610733	BAG4	O95429	457 aa	Known RBP	11.69	□□□□□ -0.54
TPM1-233	ENST00000610733	SLC26A8	Q96RN1	970 aa		11.69	□□□□□ -0.54
TPM1-233	ENST00000610733	MEIS3	Q99687	375 aa		11.69	□□□□□ -0.54
TPM1-233	ENST00000610733	AIMP1	Q12904	312 aa	Known RBP	11.69	□□□□□ -0.54
TPM1-233	ENST00000610733	PLA2R1	Q13018	1463 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	KDM4A	O75164	1064 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	SURF6	O75683	361 aa	Known RBP	11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	ZNF592	Q92610	1267 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	TRIM35	Q9UPQ4	493 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	NUCB1	Q02818	461 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	KLHL34	Q8N239	644 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	GCC1	Q96CN9	775 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	ZBTB40	Q9NUA8	1239 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	NUCB2	P80303	420 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	LMOD3	Q0VAK6	560 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	NFE2L2	Q16236	605 aa		11.68	□□□□□ -0.54
TPM1-233	ENST00000610733	ANXA1	P04083	346 aa		11.67	□□□□□ -0.54
TPM1-233	ENST00000610733	FERMT3	Q86UX7	667 aa		11.67	□□□□□ -0.54
TPM1-233	ENST00000610733	USHBP1	Q8N6Y0	703 aa		11.67	□□□□□ -0.54
TPM1-233	ENST00000610733	MBD5	Q9P267	1494 aa		11.66	□□□□□ -0.54
TPM1-233	ENST00000610733	CEBPZ	Q03701	1054 aa	Known RBP	11.66	□□□□□ -0.54
TPM1-233	ENST00000610733	FOXO3	O43524	673 aa		11.66	□□□□□ -0.54
TPM1-233	ENST00000610733	C14orf93	Q9H972	538 aa	Known RBP	11.66	□□□□□ -0.54
TPM1-233	ENST00000610733	RABEP1	Q15276	862 aa		11.66	□□□□□ -0.54
TPM1-233	ENST00000610733	ARHGEF12	Q9NZN5	1544 aa		11.65	□□□□□ -0.54
TPM1-233	ENST00000610733	FCHSD2	O94868	740 aa		11.65	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms