RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 NINLQ9Y2I6 1382 aa10.37□□□□□ -0.75
CSMD1-216ENST00000602557 CT47A1Q5JQC4 288 aaPredicted RBP10.37□□□□□ -0.75
CSMD1-216ENST00000602557 NAT10Q9H0A0 1025 aaKnown RBP10.37□□□□□ -0.75
CSMD1-216ENST00000602557 DDX58O95786 925 aaKnown RBP10.36□□□□□ -0.75
CSMD1-216ENST00000602557 MBD3O95983 291 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 ERICH2A1L162 156 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 EPS15P42566 896 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 SAMD1Q6SPF0 538 aaPredicted RBP10.36□□□□□ -0.75
CSMD1-216ENST00000602557 FYB1O15117 783 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 VGFO15240 615 aaPredicted RBP10.36□□□□□ -0.75
CSMD1-216ENST00000602557 NEFHP12036 1026 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 TSPYL4Q9UJ04 414 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 KDM4AO75164 1064 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 RUSC2Q8N2Y8 1516 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 EIF3JO75822 258 aaKnown RBP10.36□□□□□ -0.75
CSMD1-216ENST00000602557 KIF7Q2M1P5 1343 aa10.36□□□□□ -0.75
CSMD1-216ENST00000602557 SRRTQ9BXP5 876 aaKnown RBP10.36□□□□□ -0.75
CSMD1-216ENST00000602557 RALYLQ86SE5 291 aaKnown RBP10.36□□□□□ -0.75
CSMD1-216ENST00000602557 CCP110O43303 1012 aa10.35□□□□□ -0.75
CSMD1-216ENST00000602557 CDC45O75419 566 aa10.35□□□□□ -0.75
CSMD1-216ENST00000602557 ZRSR2Q15696 482 aaKnown RBP10.35□□□□□ -0.75
CSMD1-216ENST00000602557 CNKSR2Q8WXI2 1034 aa10.35□□□□□ -0.75
CSMD1-216ENST00000602557 OLFM4Q6UX06 510 aa10.35□□□□□ -0.75
CSMD1-216ENST00000602557 CCDC7Q96M83 1385 aa10.35□□□□□ -0.75
CSMD1-216ENST00000602557 RNF187Q5TA31 235 aaPredicted RBP10.34□□□□□ -0.75
CSMD1-216ENST00000602557 GOLGA6L10A6NI86 522 aa10.34□□□□□ -0.75
CSMD1-216ENST00000602557 PSME1Q06323 249 aa10.34□□□□□ -0.75
CSMD1-216ENST00000602557 DNAJC2Q99543 621 aaKnown RBP10.34□□□□□ -0.75
CSMD1-216ENST00000602557 NEUROD6Q96NK8 337 aa10.34□□□□□ -0.75
CSMD1-216ENST00000602557 LETM1O95202 739 aaPredicted RBP10.34□□□□□ -0.75
CSMD1-216ENST00000602557 SYCE3A1L190 88 aa10.34□□□□□ -0.75
CSMD1-216ENST00000602557 LRRCC1Q9C099 1032 aa10.33□□□□□ -0.76
CSMD1-216ENST00000602557 AIMP1Q12904 312 aaKnown RBP10.33□□□□□ -0.76
CSMD1-216ENST00000602557 SDF4Q9BRK5 362 aa10.33□□□□□ -0.76
CSMD1-216ENST00000602557 MIA2Q96PC5 1412 aa10.33□□□□□ -0.76
CSMD1-216ENST00000602557 IGSF3O75054 1194 aa10.33□□□□□ -0.76
CSMD1-216ENST00000602557 WASHC4Q2M389 1173 aa10.33□□□□□ -0.76
CSMD1-216ENST00000602557 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.33□□□□□ -0.76
CSMD1-216ENST00000602557 MTMR7Q9Y216 660 aa10.33□□□□□ -0.76
CSMD1-216ENST00000602557 ENOX2Q16206 610 aaKnown RBP10.33□□□□□ -0.76
CSMD1-216ENST00000602557 ERLIN1O75477 346 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 UBTFL1P0CB47 393 aaPredicted RBP10.32□□□□□ -0.76
CSMD1-216ENST00000602557 BRPF1P55201 1214 aaPredicted RBP10.32□□□□□ -0.76
CSMD1-216ENST00000602557 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.32□□□□□ -0.76
CSMD1-216ENST00000602557 GOLGA6L7A0A1B0GV03 622 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.32□□□□□ -0.76
CSMD1-216ENST00000602557 GNAI1P63096 354 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 ODF2Q5BJF6 829 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 CEBPZQ03701 1054 aaKnown RBP10.32□□□□□ -0.76
CSMD1-216ENST00000602557 NUTM2GQ5VZR2 741 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 MNAT1P51948 309 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 FSD1Q9BTV5 496 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 BRMS1Q9HCU9 246 aa10.32□□□□□ -0.76
CSMD1-216ENST00000602557 CLASRPQ8N2M8 674 aaKnown RBP10.31□□□□□ -0.76
CSMD1-216ENST00000602557 KINO60870 393 aaKnown RBP10.31□□□□□ -0.76
CSMD1-216ENST00000602557 OFD1O75665 1012 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 HSP90AB2PQ58FF8 381 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 TAX1BP1Q86VP1 789 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 FGD6Q6ZV73 1430 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 RBM33Q96EV2 1170 aaKnown RBP10.31□□□□□ -0.76
CSMD1-216ENST00000602557 DYNC1I1O14576 645 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 TNMDQ9H2S6 317 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 RIC3Q7Z5B4 369 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 CNTROBQ8N137 903 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 DDX11Q96FC9 970 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 MYOM3Q5VTT5 1437 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 HSP90AB4PQ58FF6 505 aa10.31□□□□□ -0.76
CSMD1-216ENST00000602557 C11orf95C9JLR9 678 aaPredicted RBP10.3□□□□□ -0.76
CSMD1-216ENST00000602557 CCDC192P0DO97 292 aa10.3□□□□□ -0.76
CSMD1-216ENST00000602557 TMCO3Q6UWJ1 677 aa10.3□□□□□ -0.76
CSMD1-216ENST00000602557 ZFYVE27Q5T4F4 411 aa10.3□□□□□ -0.76
CSMD1-216ENST00000602557 C1orf115Q9H7X2 142 aa10.3□□□□□ -0.76
CSMD1-216ENST00000602557 CABP2Q9NPB3 220 aa10.3□□□□□ -0.76
CSMD1-216ENST00000602557 JPH4Q96JJ6 628 aa10.3□□□□□ -0.76
CSMD1-216ENST00000602557 LMAN1P49257 510 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 PSMA5P28066 241 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 NBPF1Q3BBV0 1214 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 ARHGAP5Q13017 1502 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 SKAP1Q86WV1 359 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 UBXN4Q92575 508 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 TMX1Q9H3N1 280 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 ATP2B1P20020 1258 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 BRD4O60885 1362 aaPredicted RBP10.29□□□□□ -0.76
CSMD1-216ENST00000602557 C16orf45Q96MC5 204 aaPredicted RBP10.29□□□□□ -0.76
CSMD1-216ENST00000602557 SHTN1A0MZ66 631 aa10.29□□□□□ -0.76
CSMD1-216ENST00000602557 CFAP65Q6ZU64 1925 aaKnown RBP10.29□□□□□ -0.76
CSMD1-216ENST00000602557 CCAR1Q8IX12 1150 aaKnown RBP10.28□□□□□ -0.76
CSMD1-216ENST00000602557 PTPRGP23470 1445 aa10.28□□□□□ -0.76
CSMD1-216ENST00000602557 FANCD2Q9BXW9 1451 aa10.28□□□□□ -0.76
CSMD1-216ENST00000602557 CLGNO14967 610 aa10.28□□□□□ -0.76
CSMD1-216ENST00000602557 ADAMTS8Q9UP79 889 aa10.28□□□□□ -0.76
CSMD1-216ENST00000602557 SUPT6HQ7KZ85 1726 aaKnown RBP10.28□□□□□ -0.76
CSMD1-216ENST00000602557 NEK4P51957 841 aa10.28□□□□□ -0.76
CSMD1-216ENST00000602557 PDZRN3Q9UPQ7 1066 aa10.28□□□□□ -0.76
CSMD1-216ENST00000602557 CWC22Q9HCG8 908 aaKnown RBP10.28□□□□□ -0.76
CSMD1-216ENST00000602557 NLRP2Q9NX02 1062 aa10.27□□□□□ -0.77
CSMD1-216ENST00000602557 AAMPQ13685 434 aa10.27□□□□□ -0.77
CSMD1-216ENST00000602557 CADPSQ9ULU8 1353 aa10.27□□□□□ -0.77
CSMD1-216ENST00000602557 DNAAF4Q8WXU2 420 aa10.27□□□□□ -0.77
CSMD1-216ENST00000602557 GGNBP2Q9H3C7 697 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms