RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 NCOA3Q9Y6Q9 1424 aa23.6■■□□□ 1.37
SHKBP1-224ENST00000600718 NME9Q86XW9 330 aa23.6■■□□□ 1.37
SHKBP1-224ENST00000600718 ADAMTS8Q9UP79 889 aa23.59■■□□□ 1.37
SHKBP1-224ENST00000600718 RGPD8O14715 1765 aaPredicted RBP23.58■■□□□ 1.37
SHKBP1-224ENST00000600718 C19orf44Q9H6X5 657 aa23.58■■□□□ 1.37
SHKBP1-224ENST00000600718 SSH2Q76I76 1423 aa23.57■■□□□ 1.36
SHKBP1-224ENST00000600718 COG3Q96JB2 828 aa23.57■■□□□ 1.36
SHKBP1-224ENST00000600718 TTC21AQ8NDW8 1320 aa23.57■■□□□ 1.36
SHKBP1-224ENST00000600718 BLMP54132 1417 aaPredicted RBP23.56■■□□□ 1.36
SHKBP1-224ENST00000600718 NRKQ7Z2Y5 1582 aa23.56■■□□□ 1.36
SHKBP1-224ENST00000600718 PHF8Q9UPP1 1060 aa23.56■■□□□ 1.36
SHKBP1-224ENST00000600718 TMEM94Q12767 1356 aa23.54■■□□□ 1.36
SHKBP1-224ENST00000600718 STRCP1A6NGW2 1772 aa23.54■■□□□ 1.36
SHKBP1-224ENST00000600718 ZRANB1Q9UGI0 708 aa23.53■■□□□ 1.36
SHKBP1-224ENST00000600718 DMRT2Q9Y5R5 561 aa23.52■■□□□ 1.36
SHKBP1-224ENST00000600718 AATKQ6ZMQ8 1374 aa23.51■■□□□ 1.35
SHKBP1-224ENST00000600718 ESCO1Q5FWF5 840 aa23.51■■□□□ 1.35
SHKBP1-224ENST00000600718 DCCP43146 1447 aa23.49■■□□□ 1.35
SHKBP1-224ENST00000600718 ATF3P18847 181 aa23.49■■□□□ 1.35
SHKBP1-224ENST00000600718 POLKQ9UBT6 870 aa23.49■■□□□ 1.35
SHKBP1-224ENST00000600718 PNPLA6Q8IY17 1366 aa23.47■■□□□ 1.35
SHKBP1-224ENST00000600718 OVOS2A0A0J9YW53 1432 aa23.47■■□□□ 1.35
SHKBP1-224ENST00000600718 OVOS2Q6IE36 1432 aa23.47■■□□□ 1.35
SHKBP1-224ENST00000600718 USP31Q70CQ4 1352 aa23.47■■□□□ 1.35
SHKBP1-224ENST00000600718 NUDCQ9Y266 331 aa23.46■■□□□ 1.35
SHKBP1-224ENST00000600718 SHPRHQ149N8 1683 aa23.45■■□□□ 1.35
SHKBP1-224ENST00000600718 C1orf167Q5SNV9 1468 aa23.45■■□□□ 1.34
SHKBP1-224ENST00000600718 CADPS2Q86UW7 1296 aa23.45■■□□□ 1.34
SHKBP1-224ENST00000600718 ORAI2Q96SN7 254 aa23.45■■□□□ 1.34
SHKBP1-224ENST00000600718 PSME1Q06323 249 aa23.44■■□□□ 1.34
SHKBP1-224ENST00000600718 MSH6P52701 1360 aa23.44■■□□□ 1.34
SHKBP1-224ENST00000600718 FBLN1P23142 703 aa23.43■■□□□ 1.34
SHKBP1-224ENST00000600718 SMG6Q86US8 1419 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-224ENST00000600718 ZNF335Q9H4Z2 1342 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-224ENST00000600718 COL3A1P02461 1466 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-224ENST00000600718 DIAPH1O60610 1272 aaKnown RBP23.42■■□□□ 1.34
SHKBP1-224ENST00000600718 LRRC7Q96NW7 1537 aa23.41■■□□□ 1.34
SHKBP1-224ENST00000600718 SENP3-EIF4A1A0A087X0R7 540 aa23.41■■□□□ 1.34
SHKBP1-224ENST00000600718 MST1RQ04912 1400 aa23.41■■□□□ 1.34
SHKBP1-224ENST00000600718 PPM1GO15355 546 aaPredicted RBP23.4■■□□□ 1.34
SHKBP1-224ENST00000600718 PAK3O75914 559 aaPredicted RBP23.4■■□□□ 1.34
SHKBP1-224ENST00000600718 EMILIN1Q9Y6C2 1016 aa23.4■■□□□ 1.34
SHKBP1-224ENST00000600718 MAP2P11137 1827 aaKnown RBP23.39■■□□□ 1.34
SHKBP1-224ENST00000600718 U2AF1L5P0DN76 240 aaPredicted RBP23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 NLRP6P59044 892 aa23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 U2AF1Q01081 240 aaKnown RBP eCLIP23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 PDE3BQ13370 1112 aa23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 CCDC146Q8IYE0 955 aa23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 NGEFQ8N5V2 710 aa23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 ABTB2Q8N961 1025 aa23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 CDK12Q9NYV4 1490 aaPredicted RBP23.39■■□□□ 1.33
SHKBP1-224ENST00000600718 SALL2Q9Y467 1007 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-224ENST00000600718 PIK3C2AO00443 1686 aa23.38■■□□□ 1.33
SHKBP1-224ENST00000600718 KIF1AQ12756 1690 aa23.38■■□□□ 1.33
SHKBP1-224ENST00000600718 FOXO3O43524 673 aa23.38■■□□□ 1.33
SHKBP1-224ENST00000600718 RRS1Q15050 365 aaKnown RBP23.38■■□□□ 1.33
SHKBP1-224ENST00000600718 RUNDC1Q96C34 613 aa23.38■■□□□ 1.33
SHKBP1-224ENST00000600718 U2SURPO15042 1029 aaKnown RBP23.36■■□□□ 1.33
SHKBP1-224ENST00000600718 XIRP1Q702N8 1843 aaKnown RBP23.35■■□□□ 1.33
SHKBP1-224ENST00000600718 APAF1O14727 1248 aa23.35■■□□□ 1.33
SHKBP1-224ENST00000600718 USP54Q70EL1 1684 aa23.34■■□□□ 1.33
SHKBP1-224ENST00000600718 KRT28Q7Z3Y7 464 aa23.34■■□□□ 1.33
SHKBP1-224ENST00000600718 PNNQ9H307 717 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-224ENST00000600718 IL13P35225 146 aa23.32■■□□□ 1.32
SHKBP1-224ENST00000600718 NUTM2GQ5VZR2 741 aa23.31■■□□□ 1.32
SHKBP1-224ENST00000600718 SOX12O15370 315 aa23.29■■□□□ 1.32
SHKBP1-224ENST00000600718 NCBP3Q53F19 620 aaKnown RBP23.29■■□□□ 1.32
SHKBP1-224ENST00000600718 MAP3K19Q56UN5 1328 aa23.29■■□□□ 1.32
SHKBP1-224ENST00000600718 ZNF521Q96K83 1311 aa23.29■■□□□ 1.32
SHKBP1-224ENST00000600718 FCHSD2O94868 740 aa23.29■■□□□ 1.32
SHKBP1-224ENST00000600718 XPCQ01831 940 aaPredicted RBP23.28■■□□□ 1.32
SHKBP1-224ENST00000600718 TCP11L2Q8N4U5 519 aa23.28■■□□□ 1.32
SHKBP1-224ENST00000600718 PLEKHF1Q96S99 279 aa23.28■■□□□ 1.32
SHKBP1-224ENST00000600718 SBNO1A3KN83 1393 aa23.27■■□□□ 1.32
SHKBP1-224ENST00000600718 MARF1Q9Y4F3 1742 aaKnown RBP23.27■■□□□ 1.32
SHKBP1-224ENST00000600718 NPHP3Q7Z494 1330 aa23.27■■□□□ 1.32
SHKBP1-224ENST00000600718 KIF24Q5T7B8 1368 aa23.27■■□□□ 1.32
SHKBP1-224ENST00000600718 KCNH5Q8NCM2 988 aa23.26■■□□□ 1.31
SHKBP1-224ENST00000600718 SLAIN2Q9P270 581 aa23.26■■□□□ 1.31
SHKBP1-224ENST00000600718 AMPHP49418 695 aa23.25■■□□□ 1.31
SHKBP1-224ENST00000600718 TRPM3Q9HCF6 1732 aaPredicted RBP23.25■■□□□ 1.31
SHKBP1-224ENST00000600718 FLT4P35916 1363 aa23.25■■□□□ 1.31
SHKBP1-224ENST00000600718 IQSEC2Q5JU85 1478 aa23.25■■□□□ 1.31
SHKBP1-224ENST00000600718 GOLGA2Q08379 1002 aa23.24■■□□□ 1.31
SHKBP1-224ENST00000600718 EIF4A2Q14240 407 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-224ENST00000600718 HSP90AB2PQ58FF8 381 aa23.23■■□□□ 1.31
SHKBP1-224ENST00000600718 CDCA7LQ96GN5 454 aa23.23■■□□□ 1.31
SHKBP1-224ENST00000600718 PEAK1Q9H792 1746 aa23.23■■□□□ 1.31
SHKBP1-224ENST00000600718 RSPH6AQ9H0K4 717 aa23.23■■□□□ 1.31
SHKBP1-224ENST00000600718 MAPK8IP3Q9UPT6 1336 aa23.23■■□□□ 1.31
SHKBP1-224ENST00000600718 CCDC27Q2M243 656 aa23.22■■□□□ 1.31
SHKBP1-224ENST00000600718 BRINP3Q76B58 766 aa23.22■■□□□ 1.31
SHKBP1-224ENST00000600718 SUPT16HQ9Y5B9 1047 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-224ENST00000600718 LMOD2Q6P5Q4 547 aa23.21■■□□□ 1.31
SHKBP1-224ENST00000600718 NEFMP07197 916 aa23.2■■□□□ 1.3
SHKBP1-224ENST00000600718 WWC1Q8IX03 1113 aa23.2■■□□□ 1.3
SHKBP1-224ENST00000600718 PHF23Q9BUL5 403 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-224ENST00000600718 USP19O94966 1318 aa23.2■■□□□ 1.3
SHKBP1-224ENST00000600718 PRKAR2BP31323 418 aa23.19■■□□□ 1.3
SHKBP1-224ENST00000600718 NEUROD2Q15784 382 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms