RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 CABP2Q9NPB3 220 aa12.52□□□□□ -0.41
SSBP4-208ENST00000600628 AFF2P51816 1311 aa12.52□□□□□ -0.41
SSBP4-208ENST00000600628 CD163L1Q9NR16 1453 aa12.52□□□□□ -0.41
SSBP4-208ENST00000600628 CDK12Q9NYV4 1490 aaPredicted RBP12.52□□□□□ -0.41
SSBP4-208ENST00000600628 NWD2Q9ULI1 1742 aa12.51□□□□□ -0.41
SSBP4-208ENST00000600628 C8orf37Q96NL8 207 aa12.51□□□□□ -0.41
SSBP4-208ENST00000600628 PHRF1Q9P1Y6 1649 aaKnown RBP12.51□□□□□ -0.41
SSBP4-208ENST00000600628 MON2Q7Z3U7 1717 aa12.51□□□□□ -0.41
SSBP4-208ENST00000600628 NGDNQ8NEJ9 315 aaKnown RBP12.5□□□□□ -0.41
SSBP4-208ENST00000600628 NGLY1Q96IV0 654 aa12.5□□□□□ -0.41
SSBP4-208ENST00000600628 ATAD2Q6PL18 1390 aa12.5□□□□□ -0.41
SSBP4-208ENST00000600628 USP6P35125 1406 aa12.5□□□□□ -0.41
SSBP4-208ENST00000600628 USP54Q70EL1 1684 aa12.5□□□□□ -0.41
SSBP4-208ENST00000600628 PIK3C2AO00443 1686 aa12.49□□□□□ -0.41
SSBP4-208ENST00000600628 ATRNO75882 1429 aa12.49□□□□□ -0.41
SSBP4-208ENST00000600628 USP19O94966 1318 aa12.49□□□□□ -0.41
SSBP4-208ENST00000600628 SRPK2P78362 688 aaKnown RBP12.49□□□□□ -0.41
SSBP4-208ENST00000600628 NRAPQ86VF7 1730 aa12.48□□□□□ -0.41
SSBP4-208ENST00000600628 PLCH1Q4KWH8 1693 aa12.48□□□□□ -0.41
SSBP4-208ENST00000600628 ST20-MTHFSA0A0A6YYL1 179 aa12.48□□□□□ -0.41
SSBP4-208ENST00000600628 RXRBP28702 533 aa12.48□□□□□ -0.41
SSBP4-208ENST00000600628 CABP1Q9NZU7 370 aa12.48□□□□□ -0.41
SSBP4-208ENST00000600628 USP47Q96K76 1375 aa12.47□□□□□ -0.41
SSBP4-208ENST00000600628 CABLES1Q8TDN4 633 aa12.47□□□□□ -0.41
SSBP4-208ENST00000600628 COL14A1Q05707 1796 aaKnown RBP12.47□□□□□ -0.41
SSBP4-208ENST00000600628 SLIT3O75094 1523 aa12.47□□□□□ -0.41
SSBP4-208ENST00000600628 SLC24A1O60721 1099 aa12.46□□□□□ -0.41
SSBP4-208ENST00000600628 QTRT2Q9H974 415 aaKnown RBP12.46□□□□□ -0.41
SSBP4-208ENST00000600628 LMO7Q8WWI1 1683 aa12.45□□□□□ -0.42
SSBP4-208ENST00000600628 CCER1Q8TC90 406 aaPredicted RBP12.45□□□□□ -0.42
SSBP4-208ENST00000600628 ZNF692Q9BU19 519 aaPredicted RBP12.45□□□□□ -0.42
SSBP4-208ENST00000600628 USP21Q9UK80 565 aa12.45□□□□□ -0.42
SSBP4-208ENST00000600628 GLI3P10071 1580 aa12.44□□□□□ -0.42
SSBP4-208ENST00000600628 FAM83GA6ND36 823 aa12.44□□□□□ -0.42
SSBP4-208ENST00000600628 RBM6P78332 1123 aaKnown RBP12.44□□□□□ -0.42
SSBP4-208ENST00000600628 LMOD2Q6P5Q4 547 aa12.44□□□□□ -0.42
SSBP4-208ENST00000600628 CPDO75976 1380 aa12.43□□□□□ -0.42
SSBP4-208ENST00000600628 NINLQ9Y2I6 1382 aa12.43□□□□□ -0.42
SSBP4-208ENST00000600628 MYOM1P52179 1685 aa12.43□□□□□ -0.42
SSBP4-208ENST00000600628 COL18A1P39060 1754 aa12.43□□□□□ -0.42
SSBP4-208ENST00000600628 TTC21BQ7Z4L5 1316 aa12.42□□□□□ -0.42
SSBP4-208ENST00000600628 UNC5CLQ8IV45 518 aa12.42□□□□□ -0.42
SSBP4-208ENST00000600628 TRPC5Q9UL62 973 aaPredicted RBP12.42□□□□□ -0.42
SSBP4-208ENST00000600628 RGS12O14924 1447 aa12.42□□□□□ -0.42
SSBP4-208ENST00000600628 USP31Q70CQ4 1352 aa12.42□□□□□ -0.42
SSBP4-208ENST00000600628 TTC21AQ8NDW8 1320 aa12.41□□□□□ -0.42
SSBP4-208ENST00000600628 HAP1P54257 671 aaPredicted RBP12.41□□□□□ -0.42
SSBP4-208ENST00000600628 NFAT5O94916 1531 aa12.41□□□□□ -0.42
SSBP4-208ENST00000600628 A0A1W2PP64 1363 aa12.41□□□□□ -0.42
SSBP4-208ENST00000600628 EDC4Q6P2E9 1401 aaKnown RBP12.4□□□□□ -0.42
SSBP4-208ENST00000600628 ONECUT3O60422 494 aaPredicted RBP12.4□□□□□ -0.42
SSBP4-208ENST00000600628 PAK3O75914 559 aaPredicted RBP12.4□□□□□ -0.42
SSBP4-208ENST00000600628 PLEKHG5O94827 1062 aa12.4□□□□□ -0.42
SSBP4-208ENST00000600628 ABTB2Q8N961 1025 aa12.4□□□□□ -0.42
SSBP4-208ENST00000600628 SLC12A5Q9H2X9 1139 aa12.4□□□□□ -0.42
SSBP4-208ENST00000600628 CAMTA1Q9Y6Y1 1673 aa12.39□□□□□ -0.43
SSBP4-208ENST00000600628 VPS72Q15906 364 aa12.39□□□□□ -0.43
SSBP4-208ENST00000600628 NLRP13Q86W25 1043 aa12.39□□□□□ -0.43
SSBP4-208ENST00000600628 KTN1Q86UP2 1357 aaKnown RBP12.39□□□□□ -0.43
SSBP4-208ENST00000600628 KIAA0232Q92628 1395 aa12.39□□□□□ -0.43
SSBP4-208ENST00000600628 ABCC6O95255 1503 aa12.38□□□□□ -0.43
SSBP4-208ENST00000600628 GCP02774 474 aa12.38□□□□□ -0.43
SSBP4-208ENST00000600628 GJD4Q96KN9 370 aaPredicted RBP12.38□□□□□ -0.43
SSBP4-208ENST00000600628 OVOS2A0A0J9YW53 1432 aa12.37□□□□□ -0.43
SSBP4-208ENST00000600628 OVOS2Q6IE36 1432 aa12.37□□□□□ -0.43
SSBP4-208ENST00000600628 ANKRD36BQ8N2N9 1353 aa12.37□□□□□ -0.43
SSBP4-208ENST00000600628 BRWD3Q6RI45 1802 aa12.37□□□□□ -0.43
SSBP4-208ENST00000600628 THSD7AQ9UPZ6 1657 aa12.36□□□□□ -0.43
SSBP4-208ENST00000600628 TMF1P82094 1093 aa12.36□□□□□ -0.43
SSBP4-208ENST00000600628 NUTM2GQ5VZR2 741 aa12.36□□□□□ -0.43
SSBP4-208ENST00000600628 AATKQ6ZMQ8 1374 aa12.35□□□□□ -0.43
SSBP4-208ENST00000600628 NLRP6P59044 892 aa12.35□□□□□ -0.43
SSBP4-208ENST00000600628 ARHGEF25Q86VW2 580 aa12.35□□□□□ -0.43
SSBP4-208ENST00000600628 BTG4Q9NY30 223 aa12.35□□□□□ -0.43
SSBP4-208ENST00000600628 TERF2IPQ9NYB0 399 aa12.35□□□□□ -0.43
SSBP4-208ENST00000600628 COL5A2P05997 1499 aaPredicted RBP12.34□□□□□ -0.43
SSBP4-208ENST00000600628 RGPD5Q99666 1765 aa12.34□□□□□ -0.43
SSBP4-208ENST00000600628 UPF1Q92900 1129 aaKnown RBP eCLIP12.34□□□□□ -0.43
SSBP4-208ENST00000600628 PRDM11Q9NQV5 511 aa12.34□□□□□ -0.43
SSBP4-208ENST00000600628 SPATA31A5Q5VU36 1347 aa12.34□□□□□ -0.43
SSBP4-208ENST00000600628 SPATA31A7Q8IWB4 1347 aa12.34□□□□□ -0.43
SSBP4-208ENST00000600628 ZC3H6P61129 1189 aaKnown RBP12.33□□□□□ -0.44
SSBP4-208ENST00000600628 CDCA8Q53HL2 280 aa12.33□□□□□ -0.44
SSBP4-208ENST00000600628 HDGFL2Q7Z4V5 671 aaPredicted RBP12.33□□□□□ -0.44
SSBP4-208ENST00000600628 HSPA5P11021 654 aaKnown RBP12.32□□□□□ -0.44
SSBP4-208ENST00000600628 EIF4G2P78344 907 aaKnown RBP eCLIP12.32□□□□□ -0.44
SSBP4-208ENST00000600628 CHRNA2Q15822 529 aa12.32□□□□□ -0.44
SSBP4-208ENST00000600628 ZRANB1Q9UGI0 708 aa12.32□□□□□ -0.44
SSBP4-208ENST00000600628 LTN1O94822 1766 aa12.32□□□□□ -0.44
SSBP4-208ENST00000600628 NME9Q86XW9 330 aa12.31□□□□□ -0.44
SSBP4-208ENST00000600628 KCNH5Q8NCM2 988 aa12.31□□□□□ -0.44
SSBP4-208ENST00000600628 TMC1Q8TDI8 760 aa12.31□□□□□ -0.44
SSBP4-208ENST00000600628 SPATA31A1Q5TZJ5 1347 aa12.31□□□□□ -0.44
SSBP4-208ENST00000600628 KIF20BQ96Q89 1820 aa12.3□□□□□ -0.44
SSBP4-208ENST00000600628 CARD14Q9BXL6 1004 aa12.3□□□□□ -0.44
SSBP4-208ENST00000600628 AXIN2Q9Y2T1 843 aa12.3□□□□□ -0.44
SSBP4-208ENST00000600628 C11orf95C9JLR9 678 aaPredicted RBP12.29□□□□□ -0.44
SSBP4-208ENST00000600628 FYB1O15117 783 aa12.29□□□□□ -0.44
SSBP4-208ENST00000600628 CCDC9Q9Y3X0 531 aaKnown RBP12.29□□□□□ -0.44
SSBP4-208ENST00000600628 WNK3Q9BYP7 1800 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms