RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PHRF1Q9P1Y6 1649 aaKnown RBP27.45■■□□□ 1.98
SHKBP1-221ENST00000599833 HSPA5P11021 654 aaKnown RBP27.44■■□□□ 1.98
SHKBP1-221ENST00000599833 BRD4O60885 1362 aaPredicted RBP27.44■■□□□ 1.98
SHKBP1-221ENST00000599833 SLC24A1O60721 1099 aa27.43■■□□□ 1.98
SHKBP1-221ENST00000599833 CABLES1Q8TDN4 633 aa27.42■■□□□ 1.98
SHKBP1-221ENST00000599833 TMF1P82094 1093 aa27.41■■□□□ 1.98
SHKBP1-221ENST00000599833 SLC12A5Q9H2X9 1139 aa27.41■■□□□ 1.98
SHKBP1-221ENST00000599833 EIF4G2P78344 907 aaKnown RBP eCLIP27.4■■□□□ 1.98
SHKBP1-221ENST00000599833 A0A1W2PP64 1363 aa27.38■■□□□ 1.97
SHKBP1-221ENST00000599833 PAK3O75914 559 aaPredicted RBP27.38■■□□□ 1.97
SHKBP1-221ENST00000599833 ADAMTS2O95450 1211 aa27.38■■□□□ 1.97
SHKBP1-221ENST00000599833 NINLQ9Y2I6 1382 aa27.37■■□□□ 1.97
SHKBP1-221ENST00000599833 ILDR2Q71H61 639 aa27.37■■□□□ 1.97
SHKBP1-221ENST00000599833 USP54Q70EL1 1684 aa27.36■■□□□ 1.97
SHKBP1-221ENST00000599833 LMOD2Q6P5Q4 547 aa27.36■■□□□ 1.97
SHKBP1-221ENST00000599833 POTEAQ6S8J7 498 aa27.36■■□□□ 1.97
SHKBP1-221ENST00000599833 ZNF692Q9BU19 519 aaPredicted RBP27.36■■□□□ 1.97
SHKBP1-221ENST00000599833 PHF23Q9BUL5 403 aaPredicted RBP27.36■■□□□ 1.97
SHKBP1-221ENST00000599833 USP19O94966 1318 aa27.36■■□□□ 1.97
SHKBP1-221ENST00000599833 MEX3CQ5U5Q3 659 aaKnown RBP27.35■■□□□ 1.97
SHKBP1-221ENST00000599833 TTC21BQ7Z4L5 1316 aa27.35■■□□□ 1.97
SHKBP1-221ENST00000599833 KTN1Q86UP2 1357 aaKnown RBP27.35■■□□□ 1.97
SHKBP1-221ENST00000599833 C8orf37Q96NL8 207 aa27.34■■□□□ 1.97
SHKBP1-221ENST00000599833 SLIT3O75094 1523 aa27.34■■□□□ 1.97
SHKBP1-221ENST00000599833 AFF2P51816 1311 aa27.34■■□□□ 1.97
SHKBP1-221ENST00000599833 PLCH1Q4KWH8 1693 aa27.33■■□□□ 1.97
SHKBP1-221ENST00000599833 SLIT2O94813 1529 aa27.33■■□□□ 1.97
SHKBP1-221ENST00000599833 FNBP4Q8N3X1 1017 aaPredicted RBP27.33■■□□□ 1.97
SHKBP1-221ENST00000599833 C11orf95C9JLR9 678 aaPredicted RBP27.32■■□□□ 1.96
SHKBP1-221ENST00000599833 TMC1Q8TDI8 760 aa27.32■■□□□ 1.96
SHKBP1-221ENST00000599833 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.32■■□□□ 1.96
SHKBP1-221ENST00000599833 BCL9LQ86UU0 1499 aa27.32■■□□□ 1.96
SHKBP1-221ENST00000599833 NUTM2GQ5VZR2 741 aa27.31■■□□□ 1.96
SHKBP1-221ENST00000599833 ABTB2Q8N961 1025 aa27.31■■□□□ 1.96
SHKBP1-221ENST00000599833 ANKRD36BQ8N2N9 1353 aa27.3■■□□□ 1.96
SHKBP1-221ENST00000599833 EDC4Q6P2E9 1401 aaKnown RBP27.3■■□□□ 1.96
SHKBP1-221ENST00000599833 TTC21AQ8NDW8 1320 aa27.29■■□□□ 1.96
SHKBP1-221ENST00000599833 NWD2Q9ULI1 1742 aa27.29■■□□□ 1.96
SHKBP1-221ENST00000599833 NRAPQ86VF7 1730 aa27.28■■□□□ 1.96
SHKBP1-221ENST00000599833 PLEKHG5O94827 1062 aa27.28■■□□□ 1.96
SHKBP1-221ENST00000599833 COL14A1Q05707 1796 aaKnown RBP27.27■■□□□ 1.96
SHKBP1-221ENST00000599833 CDCA8Q53HL2 280 aa27.27■■□□□ 1.96
SHKBP1-221ENST00000599833 USP31Q70CQ4 1352 aa27.26■■□□□ 1.95
SHKBP1-221ENST00000599833 FAM83GA6ND36 823 aa27.26■■□□□ 1.95
SHKBP1-221ENST00000599833 NGLY1Q96IV0 654 aa27.26■■□□□ 1.95
SHKBP1-221ENST00000599833 HDGFL2Q7Z4V5 671 aaPredicted RBP27.25■■□□□ 1.95
SHKBP1-221ENST00000599833 TERF2IPQ9NYB0 399 aa27.25■■□□□ 1.95
SHKBP1-221ENST00000599833 LMO7Q8WWI1 1683 aa27.24■■□□□ 1.95
SHKBP1-221ENST00000599833 ZNF772Q68DY9 489 aaPredicted RBP27.24■■□□□ 1.95
SHKBP1-221ENST00000599833 ZRANB1Q9UGI0 708 aa27.24■■□□□ 1.95
SHKBP1-221ENST00000599833 ATRNO75882 1429 aa27.24■■□□□ 1.95
SHKBP1-221ENST00000599833 NFAT5O94916 1531 aa27.23■■□□□ 1.95
SHKBP1-221ENST00000599833 NLRP13Q86W25 1043 aa27.23■■□□□ 1.95
SHKBP1-221ENST00000599833 OVOS2A0A0J9YW53 1432 aa27.22■■□□□ 1.95
SHKBP1-221ENST00000599833 OVOS2Q6IE36 1432 aa27.22■■□□□ 1.95
SHKBP1-221ENST00000599833 CPDO75976 1380 aa27.22■■□□□ 1.95
SHKBP1-221ENST00000599833 KIAA0232Q92628 1395 aa27.22■■□□□ 1.95
SHKBP1-221ENST00000599833 NLRP6P59044 892 aa27.21■■□□□ 1.95
SHKBP1-221ENST00000599833 NME9Q86XW9 330 aa27.21■■□□□ 1.95
SHKBP1-221ENST00000599833 COL18A1P39060 1754 aa27.21■■□□□ 1.95
SHKBP1-221ENST00000599833 GCP02774 474 aa27.2■■□□□ 1.94
SHKBP1-221ENST00000599833 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.2■■□□□ 1.94
SHKBP1-221ENST00000599833 CARD14Q9BXL6 1004 aa27.2■■□□□ 1.94
SHKBP1-221ENST00000599833 USP21Q9UK80 565 aa27.2■■□□□ 1.94
SHKBP1-221ENST00000599833 HAP1P54257 671 aaPredicted RBP27.19■■□□□ 1.94
SHKBP1-221ENST00000599833 ZC3H6P61129 1189 aaKnown RBP27.16■■□□□ 1.94
SHKBP1-221ENST00000599833 GLI3P10071 1580 aa27.16■■□□□ 1.94
SHKBP1-221ENST00000599833 KIF20BQ96Q89 1820 aa27.16■■□□□ 1.94
SHKBP1-221ENST00000599833 KIF7Q2M1P5 1343 aa27.16■■□□□ 1.94
SHKBP1-221ENST00000599833 CAMTA1Q9Y6Y1 1673 aa27.15■■□□□ 1.94
SHKBP1-221ENST00000599833 UNC5CLQ8IV45 518 aa27.15■■□□□ 1.94
SHKBP1-221ENST00000599833 QTRT2Q9H974 415 aaKnown RBP27.15■■□□□ 1.94
SHKBP1-221ENST00000599833 CHRNA2Q15822 529 aa27.13■■□□□ 1.93
SHKBP1-221ENST00000599833 PRDM11Q9NQV5 511 aa27.12■■□□□ 1.93
SHKBP1-221ENST00000599833 TRPC5Q9UL62 973 aaPredicted RBP27.12■■□□□ 1.93
SHKBP1-221ENST00000599833 CDK12Q9NYV4 1490 aaPredicted RBP27.12■■□□□ 1.93
SHKBP1-221ENST00000599833 NSD3Q9BZ95 1437 aa27.11■■□□□ 1.93
SHKBP1-221ENST00000599833 BTG4Q9NY30 223 aa27.11■■□□□ 1.93
SHKBP1-221ENST00000599833 FYB1O15117 783 aa27.1■■□□□ 1.93
SHKBP1-221ENST00000599833 LTN1O94822 1766 aa27.09■■□□□ 1.93
SHKBP1-221ENST00000599833 ARHGEF25Q86VW2 580 aa27.09■■□□□ 1.93
SHKBP1-221ENST00000599833 RGPD5Q99666 1765 aa27.09■■□□□ 1.93
SHKBP1-221ENST00000599833 RGS12O14924 1447 aa27.08■■□□□ 1.93
SHKBP1-221ENST00000599833 RBM6P78332 1123 aaKnown RBP27.08■■□□□ 1.93
SHKBP1-221ENST00000599833 AATKQ6ZMQ8 1374 aa27.08■■□□□ 1.93
SHKBP1-221ENST00000599833 EP400Q96L91 3159 aa27.07■■□□□ 1.92
SHKBP1-221ENST00000599833 RXRBP28702 533 aa27.07■■□□□ 1.92
SHKBP1-221ENST00000599833 VPS72Q15906 364 aa27.07■■□□□ 1.92
SHKBP1-221ENST00000599833 WASHC2AQ641Q2 1341 aa27.07■■□□□ 1.92
SHKBP1-221ENST00000599833 CCDC7Q96M83 1385 aa27.07■■□□□ 1.92
SHKBP1-221ENST00000599833 KCNH5Q8NCM2 988 aa27.06■■□□□ 1.92
SHKBP1-221ENST00000599833 POLR3GLQ9BT43 218 aa27.06■■□□□ 1.92
SHKBP1-221ENST00000599833 COL5A2P05997 1499 aaPredicted RBP27.06■■□□□ 1.92
SHKBP1-221ENST00000599833 ABCC6O95255 1503 aa27.06■■□□□ 1.92
SHKBP1-221ENST00000599833 GJD4Q96KN9 370 aaPredicted RBP27.05■■□□□ 1.92
SHKBP1-221ENST00000599833 PANK3Q9H999 370 aa27.04■■□□□ 1.92
SHKBP1-221ENST00000599833 ANKRD26Q9UPS8 1709 aa27.04■■□□□ 1.92
SHKBP1-221ENST00000599833 AXIN2Q9Y2T1 843 aa27.03■■□□□ 1.92
SHKBP1-221ENST00000599833 GGNBP2Q9H3C7 697 aa27.02■■□□□ 1.92
SHKBP1-221ENST00000599833 SOX12O15370 315 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms