RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MYT1Q01538 1121 aa12.82□□□□□ -0.36
SHKBP1-220ENST00000599716 VPS72Q15906 364 aa12.82□□□□□ -0.36
SHKBP1-220ENST00000599716 FAM182BQ5T319 152 aa12.82□□□□□ -0.36
SHKBP1-220ENST00000599716 KDM2AQ9Y2K7 1162 aa12.82□□□□□ -0.36
SHKBP1-220ENST00000599716 PRR36Q9H6K5 1346 aa12.81□□□□□ -0.36
SHKBP1-220ENST00000599716 PARD3Q8TEW0 1356 aa12.81□□□□□ -0.36
SHKBP1-220ENST00000599716 RGPD1P0DJD0 1748 aa12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 TRPM3Q9HCF6 1732 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 NWD2Q9ULI1 1742 aa12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 GIGYF1O75420 1035 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 FAM98CQ17RN3 349 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 SIRT1Q96EB6 747 aa12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 ADGRB1O14514 1584 aa12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 SBNO1A3KN83 1393 aa12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 RAB3GAP2Q9H2M9 1393 aa12.8□□□□□ -0.36
SHKBP1-220ENST00000599716 NRAPQ86VF7 1730 aa12.79□□□□□ -0.36
SHKBP1-220ENST00000599716 EZH2Q15910 746 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-220ENST00000599716 BTG4Q9NY30 223 aa12.79□□□□□ -0.36
SHKBP1-220ENST00000599716 CAMTA1Q9Y6Y1 1673 aa12.79□□□□□ -0.36
SHKBP1-220ENST00000599716 CAMKK2Q96RR4 588 aa12.78□□□□□ -0.36
SHKBP1-220ENST00000599716 ARHGEF10O15013 1369 aa12.78□□□□□ -0.36
SHKBP1-220ENST00000599716 DLC1Q96QB1 1528 aa12.78□□□□□ -0.36
SHKBP1-220ENST00000599716 ADGRB2O60241 1585 aa12.77□□□□□ -0.36
SHKBP1-220ENST00000599716 ALS2Q96Q42 1657 aa12.77□□□□□ -0.36
SHKBP1-220ENST00000599716 KCNQ2O43526 872 aa12.77□□□□□ -0.37
SHKBP1-220ENST00000599716 ANKARQ7Z5J8 1434 aa12.77□□□□□ -0.37
SHKBP1-220ENST00000599716 PAK3O75914 559 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-220ENST00000599716 DCAF11Q8TEB1 546 aa12.76□□□□□ -0.37
SHKBP1-220ENST00000599716 ACIN1Q9UKV3 1341 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-220ENST00000599716 NUTM2GQ5VZR2 741 aa12.75□□□□□ -0.37
SHKBP1-220ENST00000599716 CRYBG1Q9Y4K1 1723 aa12.75□□□□□ -0.37
SHKBP1-220ENST00000599716 TULP4Q9NRJ4 1543 aa12.74□□□□□ -0.37
SHKBP1-220ENST00000599716 CHRNA2Q15822 529 aa12.74□□□□□ -0.37
SHKBP1-220ENST00000599716 NGDNQ8NEJ9 315 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-220ENST00000599716 COL14A1Q05707 1796 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-220ENST00000599716 GPRASP1Q5JY77 1395 aa12.73□□□□□ -0.37
SHKBP1-220ENST00000599716 WASLO00401 505 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-220ENST00000599716 NBPF8Q3BBV2 869 aa12.73□□□□□ -0.37
SHKBP1-220ENST00000599716 NBPF14Q5TI25 921 aa12.73□□□□□ -0.37
SHKBP1-220ENST00000599716 TNS1Q9HBL0 1735 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-220ENST00000599716 ARHGEF28Q8N1W1 1705 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-220ENST00000599716 SLC34A2O95436 690 aa12.72□□□□□ -0.37
SHKBP1-220ENST00000599716 SPATA31A5Q5VU36 1347 aa12.71□□□□□ -0.37
SHKBP1-220ENST00000599716 SPATA31A7Q8IWB4 1347 aa12.71□□□□□ -0.37
SHKBP1-220ENST00000599716 ZC3H6P61129 1189 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-220ENST00000599716 STRN4Q9NRL3 753 aa12.71□□□□□ -0.37
SHKBP1-220ENST00000599716 KIAA0232Q92628 1395 aa12.7□□□□□ -0.38
SHKBP1-220ENST00000599716 PRDM11Q9NQV5 511 aa12.7□□□□□ -0.38
SHKBP1-220ENST00000599716 USP35Q9P2H5 1018 aa12.7□□□□□ -0.38
SHKBP1-220ENST00000599716 ATP7BP35670 1465 aa12.7□□□□□ -0.38
SHKBP1-220ENST00000599716 PHRF1Q9P1Y6 1649 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-220ENST00000599716 NUDT16Q96DE0 195 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-220ENST00000599716 THSD7AQ9UPZ6 1657 aa12.69□□□□□ -0.38
SHKBP1-220ENST00000599716 CHD4Q14839 1912 aa12.67□□□□□ -0.38
SHKBP1-220ENST00000599716 APBA3O96018 575 aa12.67□□□□□ -0.38
SHKBP1-220ENST00000599716 CDK19Q9BWU1 502 aa12.67□□□□□ -0.38
SHKBP1-220ENST00000599716 ITSN1Q15811 1721 aa12.67□□□□□ -0.38
SHKBP1-220ENST00000599716 PCNTO95613 3336 aa12.67□□□□□ -0.38
SHKBP1-220ENST00000599716 TRIM37O94972 964 aa12.66□□□□□ -0.38
SHKBP1-220ENST00000599716 RREB1Q92766 1687 aa12.66□□□□□ -0.38
SHKBP1-220ENST00000599716 EIF3AQ14152 1382 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-220ENST00000599716 ACEP12821 1306 aa12.65□□□□□ -0.38
SHKBP1-220ENST00000599716 SPATA31A1Q5TZJ5 1347 aa12.65□□□□□ -0.38
SHKBP1-220ENST00000599716 NRKQ7Z2Y5 1582 aa12.65□□□□□ -0.38
SHKBP1-220ENST00000599716 TOPAZ1Q8N9V7 1692 aa12.65□□□□□ -0.38
SHKBP1-220ENST00000599716 NBPF1Q3BBV0 1214 aa12.65□□□□□ -0.38
SHKBP1-220ENST00000599716 FAM196AQ6ZSG2 479 aa12.64□□□□□ -0.39
SHKBP1-220ENST00000599716 NUP188Q5SRE5 1749 aa12.64□□□□□ -0.39
SHKBP1-220ENST00000599716 ZBTB7CA1YPR0 619 aa12.63□□□□□ -0.39
SHKBP1-220ENST00000599716 LARP1Q6PKG0 1096 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-220ENST00000599716 SSH2Q76I76 1423 aa12.62□□□□□ -0.39
SHKBP1-220ENST00000599716 SYT17Q9BSW7 474 aa12.62□□□□□ -0.39
SHKBP1-220ENST00000599716 HSPA6P17066 643 aa12.61□□□□□ -0.39
SHKBP1-220ENST00000599716 EVA1CP58658 441 aa12.61□□□□□ -0.39
SHKBP1-220ENST00000599716 ABTB2Q8N961 1025 aa12.61□□□□□ -0.39
SHKBP1-220ENST00000599716 CABP2Q9NPB3 220 aa12.61□□□□□ -0.39
SHKBP1-220ENST00000599716 PCDH10Q9P2E7 1040 aa12.61□□□□□ -0.39
SHKBP1-220ENST00000599716 POLR3AO14802 1390 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-220ENST00000599716 FHDC1Q9C0D6 1143 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-220ENST00000599716 LMO7Q8WWI1 1683 aa12.59□□□□□ -0.39
SHKBP1-220ENST00000599716 PTGER2P43116 358 aa12.59□□□□□ -0.39
SHKBP1-220ENST00000599716 CCDC61Q9Y6R9 512 aa12.59□□□□□ -0.39
SHKBP1-220ENST00000599716 MYOM1P52179 1685 aa12.58□□□□□ -0.4
SHKBP1-220ENST00000599716 CAPN15O75808 1086 aa12.58□□□□□ -0.4
SHKBP1-220ENST00000599716 SRPK2P78362 688 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-220ENST00000599716 PDE3BQ13370 1112 aa12.58□□□□□ -0.4
SHKBP1-220ENST00000599716 PPIP5K1Q6PFW1 1433 aa12.58□□□□□ -0.4
SHKBP1-220ENST00000599716 PLEKHG3A1L390 1219 aa12.57□□□□□ -0.4
SHKBP1-220ENST00000599716 PRELPP51888 382 aa12.57□□□□□ -0.4
SHKBP1-220ENST00000599716 USP19O94966 1318 aa12.57□□□□□ -0.4
SHKBP1-220ENST00000599716 GCP02774 474 aa12.56□□□□□ -0.4
SHKBP1-220ENST00000599716 PTF1AQ7RTS3 328 aa12.56□□□□□ -0.4
SHKBP1-220ENST00000599716 TCP11L2Q8N4U5 519 aa12.56□□□□□ -0.4
SHKBP1-220ENST00000599716 QRICH2Q9H0J4 1663 aa12.56□□□□□ -0.4
SHKBP1-220ENST00000599716 KIAA1210Q9ULL0 1709 aa12.56□□□□□ -0.4
SHKBP1-220ENST00000599716 COL5A2P05997 1499 aaPredicted RBP12.55□□□□□ -0.4
SHKBP1-220ENST00000599716 SHANK3Q9BYB0 1731 aa12.55□□□□□ -0.4
SHKBP1-220ENST00000599716 ZBTB7AO95365 584 aa12.55□□□□□ -0.4
SHKBP1-220ENST00000599716 BARGINQ6ZT62 677 aa12.55□□□□□ -0.4
SHKBP1-220ENST00000599716 STAC3Q96MF2 364 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms