RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NGEFQ8N5V2 710 aa18.97■□□□□ 0.63
VRK3-217ENST00000599538 PHF23Q9BUL5 403 aaPredicted RBP18.97■□□□□ 0.63
VRK3-217ENST00000599538 ARHGAP23Q9P227 1491 aa18.97■□□□□ 0.63
VRK3-217ENST00000599538 EID1Q9Y6B2 187 aa18.97■□□□□ 0.63
VRK3-217ENST00000599538 CCDC61Q9Y6R9 512 aa18.97■□□□□ 0.63
VRK3-217ENST00000599538 SLIT1O75093 1534 aa18.97■□□□□ 0.63
VRK3-217ENST00000599538 NUTM2FA1L443 756 aa18.97■□□□□ 0.63
VRK3-217ENST00000599538 BCAR3O75815 825 aa18.94■□□□□ 0.62
VRK3-217ENST00000599538 PLEKHF1Q96S99 279 aa18.94■□□□□ 0.62
VRK3-217ENST00000599538 POLKQ9UBT6 870 aa18.94■□□□□ 0.62
VRK3-217ENST00000599538 EDC4Q6P2E9 1401 aaKnown RBP18.94■□□□□ 0.62
VRK3-217ENST00000599538 PNPLA6Q8IY17 1366 aa18.94■□□□□ 0.62
VRK3-217ENST00000599538 CDC42BPGQ6DT37 1551 aa18.93■□□□□ 0.62
VRK3-217ENST00000599538 PPM1GO15355 546 aaPredicted RBP18.93■□□□□ 0.62
VRK3-217ENST00000599538 AMOTL2Q9Y2J4 779 aa18.93■□□□□ 0.62
VRK3-217ENST00000599538 THEMISQ8N1K5 641 aaPredicted RBP18.92■□□□□ 0.62
VRK3-217ENST00000599538 ADGRB2O60241 1585 aa18.91■□□□□ 0.62
VRK3-217ENST00000599538 MAP2P11137 1827 aaKnown RBP18.91■□□□□ 0.62
VRK3-217ENST00000599538 DIAPH1O60610 1272 aaKnown RBP18.91■□□□□ 0.62
VRK3-217ENST00000599538 EMILIN1Q9Y6C2 1016 aa18.91■□□□□ 0.62
VRK3-217ENST00000599538 MON2Q7Z3U7 1717 aa18.91■□□□□ 0.62
VRK3-217ENST00000599538 TBX22Q9Y458 520 aa18.9■□□□□ 0.62
VRK3-217ENST00000599538 CCDC27Q2M243 656 aa18.89■□□□□ 0.62
VRK3-217ENST00000599538 AKAP12Q02952 1782 aa18.89■□□□□ 0.61
VRK3-217ENST00000599538 WDR63Q8IWG1 891 aa18.89■□□□□ 0.61
VRK3-217ENST00000599538 RIMS1Q86UR5 1692 aaKnown RBP18.88■□□□□ 0.61
VRK3-217ENST00000599538 TMPOP42166 694 aaKnown RBP18.87■□□□□ 0.61
VRK3-217ENST00000599538 ITSN1Q15811 1721 aa18.87■□□□□ 0.61
VRK3-217ENST00000599538 ACEP12821 1306 aa18.87■□□□□ 0.61
VRK3-217ENST00000599538 RRS1Q15050 365 aaKnown RBP18.86■□□□□ 0.61
VRK3-217ENST00000599538 TRIM35Q9UPQ4 493 aa18.86■□□□□ 0.61
VRK3-217ENST00000599538 CEP170BQ9Y4F5 1589 aaPredicted RBP18.85■□□□□ 0.61
VRK3-217ENST00000599538 COG3Q96JB2 828 aa18.85■□□□□ 0.61
VRK3-217ENST00000599538 ZNF692Q9BU19 519 aaPredicted RBP18.85■□□□□ 0.61
VRK3-217ENST00000599538 TOPAZ1Q8N9V7 1692 aa18.84■□□□□ 0.61
VRK3-217ENST00000599538 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.84■□□□□ 0.61
VRK3-217ENST00000599538 MAPK8IP3Q9UPT6 1336 aa18.83■□□□□ 0.61
VRK3-217ENST00000599538 PLEKHG3A1L390 1219 aa18.83■□□□□ 0.6
VRK3-217ENST00000599538 SKAP1Q86WV1 359 aa18.83■□□□□ 0.6
VRK3-217ENST00000599538 LRRC7Q96NW7 1537 aa18.83■□□□□ 0.6
VRK3-217ENST00000599538 HMOX1P09601 288 aa18.82■□□□□ 0.6
VRK3-217ENST00000599538 KCNA6P17658 529 aa18.82■□□□□ 0.6
VRK3-217ENST00000599538 NCBP3Q53F19 620 aaKnown RBP18.82■□□□□ 0.6
VRK3-217ENST00000599538 PMFBP1Q8TBY8 1022 aa18.82■□□□□ 0.6
VRK3-217ENST00000599538 TSR2Q969E8 191 aaKnown RBP18.82■□□□□ 0.6
VRK3-217ENST00000599538 RSPH6AQ9H0K4 717 aa18.82■□□□□ 0.6
VRK3-217ENST00000599538 TTC21BQ7Z4L5 1316 aa18.82■□□□□ 0.6
VRK3-217ENST00000599538 PTCH1Q13635 1447 aa18.82■□□□□ 0.6
VRK3-217ENST00000599538 AATKQ6ZMQ8 1374 aa18.81■□□□□ 0.6
VRK3-217ENST00000599538 PRKAR2BP31323 418 aa18.81■□□□□ 0.6
VRK3-217ENST00000599538 IL13P35225 146 aa18.81■□□□□ 0.6
VRK3-217ENST00000599538 RARSP54136 660 aaKnown RBP18.81■□□□□ 0.6
VRK3-217ENST00000599538 RIPK4P57078 832 aa18.81■□□□□ 0.6
VRK3-217ENST00000599538 NRKQ7Z2Y5 1582 aa18.81■□□□□ 0.6
VRK3-217ENST00000599538 BCL2L13Q9BXK5 485 aa18.8■□□□□ 0.6
VRK3-217ENST00000599538 RGPD8O14715 1765 aaPredicted RBP18.8■□□□□ 0.6
VRK3-217ENST00000599538 FCHSD2O94868 740 aa18.8■□□□□ 0.6
VRK3-217ENST00000599538 PHACTR3Q96KR7 559 aa18.8■□□□□ 0.6
VRK3-217ENST00000599538 DIP2AQ14689 1571 aa18.8■□□□□ 0.6
VRK3-217ENST00000599538 USP6P35125 1406 aa18.79■□□□□ 0.6
VRK3-217ENST00000599538 XRN1Q8IZH2 1706 aaKnown RBP18.79■□□□□ 0.6
VRK3-217ENST00000599538 CDK12Q9NYV4 1490 aaPredicted RBP18.79■□□□□ 0.6
VRK3-217ENST00000599538 FANCIQ9NVI1 1328 aa18.78■□□□□ 0.6
VRK3-217ENST00000599538 MYH16Q9H6N6 1097 aa18.78■□□□□ 0.6
VRK3-217ENST00000599538 TNNQ9UQP3 1299 aa18.78■□□□□ 0.6
VRK3-217ENST00000599538 FRAT1Q92837 279 aaPredicted RBP18.77■□□□□ 0.6
VRK3-217ENST00000599538 PANK1Q8TE04 598 aa18.77■□□□□ 0.6
VRK3-217ENST00000599538 ADAMTSL3P82987 1691 aa18.76■□□□□ 0.59
VRK3-217ENST00000599538 KDM2BQ8NHM5 1336 aa18.76■□□□□ 0.59
VRK3-217ENST00000599538 OVOS2A0A0J9YW53 1432 aa18.76■□□□□ 0.59
VRK3-217ENST00000599538 OVOS2Q6IE36 1432 aa18.76■□□□□ 0.59
VRK3-217ENST00000599538 SSH2Q76I76 1423 aa18.76■□□□□ 0.59
VRK3-217ENST00000599538 RBM33Q96EV2 1170 aaKnown RBP18.76■□□□□ 0.59
VRK3-217ENST00000599538 SOX12O15370 315 aa18.74■□□□□ 0.59
VRK3-217ENST00000599538 EXOSC9Q06265 439 aaKnown RBP18.74■□□□□ 0.59
VRK3-217ENST00000599538 PNNQ9H307 717 aaKnown RBP18.74■□□□□ 0.59
VRK3-217ENST00000599538 COG6Q9Y2V7 657 aa18.74■□□□□ 0.59
VRK3-217ENST00000599538 RLBP1P12271 317 aa18.73■□□□□ 0.59
VRK3-217ENST00000599538 CANXP27824 592 aaKnown RBP18.73■□□□□ 0.59
VRK3-217ENST00000599538 PDE3AQ14432 1141 aa18.73■□□□□ 0.59
VRK3-217ENST00000599538 ANKLE2Q86XL3 938 aa18.73■□□□□ 0.59
VRK3-217ENST00000599538 THUMPD2Q9BTF0 503 aaKnown RBP18.73■□□□□ 0.59
VRK3-217ENST00000599538 NGDNQ8NEJ9 315 aaKnown RBP18.71■□□□□ 0.59
VRK3-217ENST00000599538 MSH5O43196 834 aa18.71■□□□□ 0.59
VRK3-217ENST00000599538 ZNF142P52746 1687 aaPredicted RBP18.7■□□□□ 0.58
VRK3-217ENST00000599538 EIF4A2Q14240 407 aaKnown RBP18.7■□□□□ 0.58
VRK3-217ENST00000599538 NFE2L2Q16236 605 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 IL16Q14005 1332 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 PIK3R4Q99570 1358 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 PEAK1Q9H792 1746 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 HSP90AB2PQ58FF8 381 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 AEBP1Q8IUX7 1158 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 CLUAP1Q96AJ1 413 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 DNAJC5Q9H3Z4 198 aa18.7■□□□□ 0.58
VRK3-217ENST00000599538 NALCNQ8IZF0 1738 aa18.69■□□□□ 0.58
VRK3-217ENST00000599538 USP31Q70CQ4 1352 aa18.69■□□□□ 0.58
VRK3-217ENST00000599538 TCERG1O14776 1098 aaKnown RBP18.68■□□□□ 0.58
VRK3-217ENST00000599538 SETD1BQ9UPS6 1966 aaKnown RBP18.68■□□□□ 0.58
VRK3-217ENST00000599538 CHD2O14647 1828 aaKnown RBP18.68■□□□□ 0.58
VRK3-217ENST00000599538 NEFMP07197 916 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 218 ms