RNA–Protein interactions for RNA: ENST00000599398.5

CCDC9-204, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-204ENST00000599398 PPIP5K1Q6PFW1 1433 aa32.13■■■□□ 2.73
CCDC9-204ENST00000599398 CDK12Q9NYV4 1490 aaPredicted RBP32.1■■■□□ 2.73
CCDC9-204ENST00000599398 BCL9LQ86UU0 1499 aa32.09■■■□□ 2.73
CCDC9-204ENST00000599398 ATRNO75882 1429 aa32.08■■■□□ 2.73
CCDC9-204ENST00000599398 CABP1Q9NZU7 370 aa32.06■■■□□ 2.72
CCDC9-204ENST00000599398 SLIT2O94813 1529 aa32.05■■■□□ 2.72
CCDC9-204ENST00000599398 RGS12O14924 1447 aa32.04■■■□□ 2.72
CCDC9-204ENST00000599398 UNC5CLQ8IV45 518 aa32.04■■■□□ 2.72
CCDC9-204ENST00000599398 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.03■■■□□ 2.72
CCDC9-204ENST00000599398 NUTM2GQ5VZR2 741 aa32.03■■■□□ 2.72
CCDC9-204ENST00000599398 PLCH1Q4KWH8 1693 aa32.02■■■□□ 2.72
CCDC9-204ENST00000599398 CRYBG1Q9Y4K1 1723 aa32■■■□□ 2.71
CCDC9-204ENST00000599398 FAM83GA6ND36 823 aa32■■■□□ 2.71
CCDC9-204ENST00000599398 CLSPNQ9HAW4 1339 aa32■■■□□ 2.71
CCDC9-204ENST00000599398 SBNO2Q9Y2G9 1366 aa31.99■■■□□ 2.71
CCDC9-204ENST00000599398 ABTB2Q8N961 1025 aa31.99■■■□□ 2.71
CCDC9-204ENST00000599398 GJD4Q96KN9 370 aaPredicted RBP31.98■■■□□ 2.71
CCDC9-204ENST00000599398 NWD2Q9ULI1 1742 aa31.97■■■□□ 2.71
CCDC9-204ENST00000599398 ATAD2Q6PL18 1390 aa31.95■■■□□ 2.71
CCDC9-204ENST00000599398 USP6P35125 1406 aa31.94■■■□□ 2.7
CCDC9-204ENST00000599398 PHRF1Q9P1Y6 1649 aaKnown RBP31.94■■■□□ 2.7
CCDC9-204ENST00000599398 PRDM11Q9NQV5 511 aa31.93■■■□□ 2.7
CCDC9-204ENST00000599398 CCDC9Q9Y3X0 531 aaKnown RBP31.93■■■□□ 2.7
CCDC9-204ENST00000599398 COL14A1Q05707 1796 aaKnown RBP31.93■■■□□ 2.7
CCDC9-204ENST00000599398 BRD4O60885 1362 aaPredicted RBP31.93■■■□□ 2.7
CCDC9-204ENST00000599398 BTG4Q9NY30 223 aa31.92■■■□□ 2.7
CCDC9-204ENST00000599398 CCER1Q8TC90 406 aaPredicted RBP31.91■■■□□ 2.7
CCDC9-204ENST00000599398 VPS72Q15906 364 aa31.9■■■□□ 2.7
CCDC9-204ENST00000599398 TIMELESSQ9UNS1 1208 aa31.9■■■□□ 2.7
CCDC9-204ENST00000599398 ZC3H6P61129 1189 aaKnown RBP31.89■■■□□ 2.7
CCDC9-204ENST00000599398 NLRP13Q86W25 1043 aa31.89■■■□□ 2.7
CCDC9-204ENST00000599398 KIAA0232Q92628 1395 aa31.89■■■□□ 2.7
CCDC9-204ENST00000599398 GLI3P10071 1580 aa31.89■■■□□ 2.7
CCDC9-204ENST00000599398 ST20-MTHFSA0A0A6YYL1 179 aa31.88■■■□□ 2.69
CCDC9-204ENST00000599398 AKAP12Q02952 1782 aa31.87■■■□□ 2.69
CCDC9-204ENST00000599398 UPF1Q92900 1129 aaKnown RBP eCLIP31.87■■■□□ 2.69
CCDC9-204ENST00000599398 ZNF692Q9BU19 519 aaPredicted RBP31.87■■■□□ 2.69
CCDC9-204ENST00000599398 NRAPQ86VF7 1730 aa31.86■■■□□ 2.69
CCDC9-204ENST00000599398 CHRNA2Q15822 529 aa31.85■■■□□ 2.69
CCDC9-204ENST00000599398 USP19O94966 1318 aa31.84■■■□□ 2.69
CCDC9-204ENST00000599398 NLRP6P59044 892 aa31.84■■■□□ 2.69
CCDC9-204ENST00000599398 TMC1Q8TDI8 760 aa31.84■■■□□ 2.69
CCDC9-204ENST00000599398 NRKQ7Z2Y5 1582 aa31.84■■■□□ 2.69
CCDC9-204ENST00000599398 SSH2Q76I76 1423 aa31.82■■■□□ 2.68
CCDC9-204ENST00000599398 KTN1Q86UP2 1357 aaKnown RBP31.81■■■□□ 2.68
CCDC9-204ENST00000599398 TESK2Q96S53 571 aa31.81■■■□□ 2.68
CCDC9-204ENST00000599398 CPSF1Q10570 1443 aaKnown RBP31.81■■■□□ 2.68
CCDC9-204ENST00000599398 USP47Q96K76 1375 aa31.81■■■□□ 2.68
CCDC9-204ENST00000599398 TTC21BQ7Z4L5 1316 aa31.8■■■□□ 2.68
CCDC9-204ENST00000599398 GCP02774 474 aa31.8■■■□□ 2.68
CCDC9-204ENST00000599398 PIK3C2AO00443 1686 aa31.8■■■□□ 2.68
CCDC9-204ENST00000599398 SLC24A1O60721 1099 aa31.78■■■□□ 2.68
CCDC9-204ENST00000599398 MON2Q7Z3U7 1717 aa31.76■■■□□ 2.67
CCDC9-204ENST00000599398 SLC12A5Q9H2X9 1139 aa31.76■■■□□ 2.67
CCDC9-204ENST00000599398 STRN4Q9NRL3 753 aa31.76■■■□□ 2.67
CCDC9-204ENST00000599398 TTC21AQ8NDW8 1320 aa31.75■■■□□ 2.67
CCDC9-204ENST00000599398 A0A0G2JS52 829 aa31.75■■■□□ 2.67
CCDC9-204ENST00000599398 ZBTB7CA1YPR0 619 aa31.75■■■□□ 2.67
CCDC9-204ENST00000599398 MYT1Q01538 1121 aa31.75■■■□□ 2.67
CCDC9-204ENST00000599398 HDGFL2Q7Z4V5 671 aaPredicted RBP31.75■■■□□ 2.67
CCDC9-204ENST00000599398 SEPT12Q8IYM1 358 aa31.75■■■□□ 2.67
CCDC9-204ENST00000599398 PUS7Q96PZ0 661 aaKnown RBP31.75■■■□□ 2.67
CCDC9-204ENST00000599398 CPDO75976 1380 aa31.75■■■□□ 2.67
CCDC9-204ENST00000599398 BRWD3Q6RI45 1802 aa31.72■■■□□ 2.67
CCDC9-204ENST00000599398 SLIT3O75094 1523 aa31.72■■■□□ 2.67
CCDC9-204ENST00000599398 FAM98CQ17RN3 349 aaKnown RBP31.72■■■□□ 2.67
CCDC9-204ENST00000599398 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.72■■■□□ 2.67
CCDC9-204ENST00000599398 SPATA31A5Q5VU36 1347 aa31.72■■■□□ 2.67
CCDC9-204ENST00000599398 SPATA31A7Q8IWB4 1347 aa31.72■■■□□ 2.67
CCDC9-204ENST00000599398 CD163L1Q9NR16 1453 aa31.72■■■□□ 2.67
CCDC9-204ENST00000599398 EVA1CP58658 441 aa31.71■■■□□ 2.67
CCDC9-204ENST00000599398 TERF2IPQ9NYB0 399 aa31.71■■■□□ 2.67
CCDC9-204ENST00000599398 ONECUT3O60422 494 aaPredicted RBP31.7■■■□□ 2.67
CCDC9-204ENST00000599398 TMF1P82094 1093 aa31.7■■■□□ 2.67
CCDC9-204ENST00000599398 EP400Q96L91 3159 aa31.68■■■□□ 2.66
CCDC9-204ENST00000599398 SOX12O15370 315 aa31.68■■■□□ 2.66
CCDC9-204ENST00000599398 LMO7Q8WWI1 1683 aa31.67■■■□□ 2.66
CCDC9-204ENST00000599398 CAMTA1Q9Y6Y1 1673 aa31.67■■■□□ 2.66
CCDC9-204ENST00000599398 A0A1W2PP64 1363 aa31.67■■■□□ 2.66
CCDC9-204ENST00000599398 NINLQ9Y2I6 1382 aa31.66■■■□□ 2.66
CCDC9-204ENST00000599398 KCNH5Q8NCM2 988 aa31.64■■■□□ 2.66
CCDC9-204ENST00000599398 USP35Q9P2H5 1018 aa31.64■■■□□ 2.66
CCDC9-204ENST00000599398 SPATA31A1Q5TZJ5 1347 aa31.64■■■□□ 2.66
CCDC9-204ENST00000599398 EDC4Q6P2E9 1401 aaKnown RBP31.64■■■□□ 2.66
CCDC9-204ENST00000599398 KRT27Q7Z3Y8 459 aa31.63■■■□□ 2.65
CCDC9-204ENST00000599398 NME9Q86XW9 330 aa31.63■■■□□ 2.65
CCDC9-204ENST00000599398 ZRANB1Q9UGI0 708 aa31.63■■■□□ 2.65
CCDC9-204ENST00000599398 LARP1Q6PKG0 1096 aaKnown RBP31.61■■■□□ 2.65
CCDC9-204ENST00000599398 AATKQ6ZMQ8 1374 aa31.6■■■□□ 2.65
CCDC9-204ENST00000599398 CDCA8Q53HL2 280 aa31.59■■■□□ 2.65
CCDC9-204ENST00000599398 COL5A2P05997 1499 aaPredicted RBP31.59■■■□□ 2.65
CCDC9-204ENST00000599398 USP31Q70CQ4 1352 aa31.57■■■□□ 2.64
CCDC9-204ENST00000599398 ARHGEF25Q86VW2 580 aa31.57■■■□□ 2.64
CCDC9-204ENST00000599398 THSD7AQ9UPZ6 1657 aa31.56■■■□□ 2.64
CCDC9-204ENST00000599398 NFAT5O94916 1531 aa31.55■■■□□ 2.64
CCDC9-204ENST00000599398 COL18A1P39060 1754 aa31.55■■■□□ 2.64
CCDC9-204ENST00000599398 USP54Q70EL1 1684 aa31.54■■■□□ 2.64
CCDC9-204ENST00000599398 CCDC125Q86Z20 511 aa31.54■■■□□ 2.64
CCDC9-204ENST00000599398 TCP11L2Q8N4U5 519 aa31.53■■■□□ 2.64
CCDC9-204ENST00000599398 ANKRD36BQ8N2N9 1353 aa31.53■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms