RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 TRPM1Q7Z4N2 1603 aa14.97□□□□□ -0.01
CCDC9-203ENST00000596938 VPS72Q15906 364 aa14.97□□□□□ -0.01
CCDC9-203ENST00000596938 PPIP5K1Q6PFW1 1433 aa14.97□□□□□ -0.01
CCDC9-203ENST00000596938 BRD4O60885 1362 aaPredicted RBP14.97□□□□□ -0.01
CCDC9-203ENST00000596938 TRPM3Q9HCF6 1732 aaPredicted RBP14.95□□□□□ -0.02
CCDC9-203ENST00000596938 ONECUT3O60422 494 aaPredicted RBP14.95□□□□□ -0.02
CCDC9-203ENST00000596938 ABTB2Q8N961 1025 aa14.95□□□□□ -0.02
CCDC9-203ENST00000596938 ZNF692Q9BU19 519 aaPredicted RBP14.94□□□□□ -0.02
CCDC9-203ENST00000596938 BTG4Q9NY30 223 aa14.94□□□□□ -0.02
CCDC9-203ENST00000596938 NLRP13Q86W25 1043 aa14.93□□□□□ -0.02
CCDC9-203ENST00000596938 SBNO2Q9Y2G9 1366 aa14.93□□□□□ -0.02
CCDC9-203ENST00000596938 ALS2Q96Q42 1657 aa14.93□□□□□ -0.02
CCDC9-203ENST00000596938 ITSN1Q15811 1721 aa14.92□□□□□ -0.02
CCDC9-203ENST00000596938 NUTM2GQ5VZR2 741 aa14.92□□□□□ -0.02
CCDC9-203ENST00000596938 PRDM11Q9NQV5 511 aa14.92□□□□□ -0.02
CCDC9-203ENST00000596938 TIMELESSQ9UNS1 1208 aa14.92□□□□□ -0.02
CCDC9-203ENST00000596938 RALGAPBQ86X10 1494 aa14.92□□□□□ -0.02
CCDC9-203ENST00000596938 MARF1Q9Y4F3 1742 aaKnown RBP14.92□□□□□ -0.02
CCDC9-203ENST00000596938 ATAD2Q6PL18 1390 aa14.91□□□□□ -0.02
CCDC9-203ENST00000596938 CCDC9Q9Y3X0 531 aaKnown RBP14.91□□□□□ -0.02
CCDC9-203ENST00000596938 CLSPNQ9HAW4 1339 aa14.91□□□□□ -0.02
CCDC9-203ENST00000596938 TOPAZ1Q8N9V7 1692 aa14.9□□□□□ -0.02
CCDC9-203ENST00000596938 SLC24A1O60721 1099 aa14.9□□□□□ -0.02
CCDC9-203ENST00000596938 ZC3H6P61129 1189 aaKnown RBP14.9□□□□□ -0.02
CCDC9-203ENST00000596938 PUS7Q96PZ0 661 aaKnown RBP14.9□□□□□ -0.02
CCDC9-203ENST00000596938 USP6P35125 1406 aa14.9□□□□□ -0.02
CCDC9-203ENST00000596938 QRICH2Q9H0J4 1663 aa14.9□□□□□ -0.02
CCDC9-203ENST00000596938 USP19O94966 1318 aa14.9□□□□□ -0.02
CCDC9-203ENST00000596938 KIAA0232Q92628 1395 aa14.89□□□□□ -0.03
CCDC9-203ENST00000596938 GCP02774 474 aa14.89□□□□□ -0.03
CCDC9-203ENST00000596938 SEPT12Q8IYM1 358 aa14.89□□□□□ -0.03
CCDC9-203ENST00000596938 SSH2Q76I76 1423 aa14.89□□□□□ -0.03
CCDC9-203ENST00000596938 NLRP6P59044 892 aa14.88□□□□□ -0.03
CCDC9-203ENST00000596938 CCDC125Q86Z20 511 aa14.88□□□□□ -0.03
CCDC9-203ENST00000596938 PCGF6Q9BYE7 350 aa14.88□□□□□ -0.03
CCDC9-203ENST00000596938 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.88□□□□□ -0.03
CCDC9-203ENST00000596938 CPDO75976 1380 aa14.87□□□□□ -0.03
CCDC9-203ENST00000596938 CHRNA2Q15822 529 aa14.87□□□□□ -0.03
CCDC9-203ENST00000596938 SPATA31A5Q5VU36 1347 aa14.87□□□□□ -0.03
CCDC9-203ENST00000596938 SPATA31A7Q8IWB4 1347 aa14.87□□□□□ -0.03
CCDC9-203ENST00000596938 GLI3P10071 1580 aa14.86□□□□□ -0.03
CCDC9-203ENST00000596938 CPSF1Q10570 1443 aaKnown RBP14.86□□□□□ -0.03
CCDC9-203ENST00000596938 ST20-MTHFSA0A0A6YYL1 179 aa14.86□□□□□ -0.03
CCDC9-203ENST00000596938 TESK2Q96S53 571 aa14.86□□□□□ -0.03
CCDC9-203ENST00000596938 TTC21BQ7Z4L5 1316 aa14.86□□□□□ -0.03
CCDC9-203ENST00000596938 ABCA3Q99758 1704 aa14.86□□□□□ -0.03
CCDC9-203ENST00000596938 EP400Q96L91 3159 aa14.85□□□□□ -0.03
CCDC9-203ENST00000596938 NWD2Q9ULI1 1742 aa14.85□□□□□ -0.03
CCDC9-203ENST00000596938 TTC21AQ8NDW8 1320 aa14.85□□□□□ -0.03
CCDC9-203ENST00000596938 COL14A1Q05707 1796 aaKnown RBP14.85□□□□□ -0.03
CCDC9-203ENST00000596938 EVA1CP58658 441 aa14.84□□□□□ -0.03
CCDC9-203ENST00000596938 FAM98CQ17RN3 349 aaKnown RBP14.84□□□□□ -0.03
CCDC9-203ENST00000596938 KRT27Q7Z3Y8 459 aa14.84□□□□□ -0.03
CCDC9-203ENST00000596938 SPATA31A1Q5TZJ5 1347 aa14.83□□□□□ -0.04
CCDC9-203ENST00000596938 KTN1Q86UP2 1357 aaKnown RBP14.83□□□□□ -0.04
CCDC9-203ENST00000596938 PLCH1Q4KWH8 1693 aa14.82□□□□□ -0.04
CCDC9-203ENST00000596938 KCNH5Q8NCM2 988 aa14.82□□□□□ -0.04
CCDC9-203ENST00000596938 TMC1Q8TDI8 760 aa14.82□□□□□ -0.04
CCDC9-203ENST00000596938 SLC12A5Q9H2X9 1139 aa14.82□□□□□ -0.04
CCDC9-203ENST00000596938 STRN4Q9NRL3 753 aa14.82□□□□□ -0.04
CCDC9-203ENST00000596938 CRYBG1Q9Y4K1 1723 aa14.82□□□□□ -0.04
CCDC9-203ENST00000596938 HDGFL2Q7Z4V5 671 aaPredicted RBP14.81□□□□□ -0.04
CCDC9-203ENST00000596938 TERF2IPQ9NYB0 399 aa14.81□□□□□ -0.04
CCDC9-203ENST00000596938 A0A0G2JS52 829 aa14.8□□□□□ -0.04
CCDC9-203ENST00000596938 MYT1Q01538 1121 aa14.8□□□□□ -0.04
CCDC9-203ENST00000596938 BARGINQ6ZT62 677 aa14.8□□□□□ -0.04
CCDC9-203ENST00000596938 AATKQ6ZMQ8 1374 aa14.8□□□□□ -0.04
CCDC9-203ENST00000596938 LARP1Q6PKG0 1096 aaKnown RBP14.79□□□□□ -0.04
CCDC9-203ENST00000596938 ARHGEF25Q86VW2 580 aa14.79□□□□□ -0.04
CCDC9-203ENST00000596938 NRAPQ86VF7 1730 aa14.78□□□□□ -0.04
CCDC9-203ENST00000596938 CAMTA1Q9Y6Y1 1673 aa14.78□□□□□ -0.04
CCDC9-203ENST00000596938 PHRF1Q9P1Y6 1649 aaKnown RBP14.78□□□□□ -0.04
CCDC9-203ENST00000596938 THRAP3Q9Y2W1 955 aaKnown RBP14.78□□□□□ -0.04
CCDC9-203ENST00000596938 NRKQ7Z2Y5 1582 aa14.77□□□□□ -0.04
CCDC9-203ENST00000596938 SLIT3O75094 1523 aa14.77□□□□□ -0.04
CCDC9-203ENST00000596938 CD163L1Q9NR16 1453 aa14.77□□□□□ -0.04
CCDC9-203ENST00000596938 USP31Q70CQ4 1352 aa14.77□□□□□ -0.04
CCDC9-203ENST00000596938 NINLQ9Y2I6 1382 aa14.77□□□□□ -0.04
CCDC9-203ENST00000596938 TMF1P82094 1093 aa14.77□□□□□ -0.05
CCDC9-203ENST00000596938 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.77□□□□□ -0.05
CCDC9-203ENST00000596938 TCP11L2Q8N4U5 519 aa14.77□□□□□ -0.05
CCDC9-203ENST00000596938 BLMP54132 1417 aaPredicted RBP14.76□□□□□ -0.05
CCDC9-203ENST00000596938 USP47Q96K76 1375 aa14.76□□□□□ -0.05
CCDC9-203ENST00000596938 CCER1Q8TC90 406 aaPredicted RBP14.76□□□□□ -0.05
CCDC9-203ENST00000596938 USP35Q9P2H5 1018 aa14.76□□□□□ -0.05
CCDC9-203ENST00000596938 AXIN2Q9Y2T1 843 aa14.76□□□□□ -0.05
CCDC9-203ENST00000596938 ZBTB7CA1YPR0 619 aa14.75□□□□□ -0.05
CCDC9-203ENST00000596938 CDCA8Q53HL2 280 aa14.75□□□□□ -0.05
CCDC9-203ENST00000596938 NME9Q86XW9 330 aa14.75□□□□□ -0.05
CCDC9-203ENST00000596938 ZRANB1Q9UGI0 708 aa14.75□□□□□ -0.05
CCDC9-203ENST00000596938 EDC4Q6P2E9 1401 aaKnown RBP14.75□□□□□ -0.05
CCDC9-203ENST00000596938 SF3B2Q13435 895 aaKnown RBP14.74□□□□□ -0.05
CCDC9-203ENST00000596938 A0A1W2PP64 1363 aa14.73□□□□□ -0.05
CCDC9-203ENST00000596938 COL5A2P05997 1499 aaPredicted RBP14.73□□□□□ -0.05
CCDC9-203ENST00000596938 PIK3C2AO00443 1686 aa14.73□□□□□ -0.05
CCDC9-203ENST00000596938 LMO7Q8WWI1 1683 aa14.73□□□□□ -0.05
CCDC9-203ENST00000596938 SOX12O15370 315 aa14.72□□□□□ -0.05
CCDC9-203ENST00000596938 FAM196AQ6ZSG2 479 aa14.72□□□□□ -0.05
CCDC9-203ENST00000596938 CRB1P82279 1406 aa14.72□□□□□ -0.05
CCDC9-203ENST00000596938 WDR17Q8IZU2 1322 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms