RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 SPATA31A1Q5TZJ5 1347 aa20.62■□□□□ 0.89
SHKBP1-208ENST00000595726 CHRNA2Q15822 529 aa20.62■□□□□ 0.89
SHKBP1-208ENST00000595726 PRDM11Q9NQV5 511 aa20.62■□□□□ 0.89
SHKBP1-208ENST00000595726 STRN4Q9NRL3 753 aa20.62■□□□□ 0.89
SHKBP1-208ENST00000595726 HIRIP3Q9BW71 556 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-208ENST00000595726 POGKQ9P215 609 aa20.61■□□□□ 0.89
SHKBP1-208ENST00000595726 PPP1R1BQ9UD71 204 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-208ENST00000595726 DHX57Q6P158 1386 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-208ENST00000595726 PAK3O75914 559 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-208ENST00000595726 USP35Q9P2H5 1018 aa20.6■□□□□ 0.89
SHKBP1-208ENST00000595726 GPRASP1Q5JY77 1395 aa20.59■□□□□ 0.89
SHKBP1-208ENST00000595726 UTRNP46939 3433 aa20.59■□□□□ 0.89
SHKBP1-208ENST00000595726 ACIN1Q9UKV3 1341 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-208ENST00000595726 NBPF8Q3BBV2 869 aa20.59■□□□□ 0.89
SHKBP1-208ENST00000595726 NBPF14Q5TI25 921 aa20.59■□□□□ 0.89
SHKBP1-208ENST00000595726 TRPM3Q9HCF6 1732 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-208ENST00000595726 PRR36Q9H6K5 1346 aa20.58■□□□□ 0.89
SHKBP1-208ENST00000595726 SPON1Q9HCB6 807 aa20.58■□□□□ 0.89
SHKBP1-208ENST00000595726 ANKARQ7Z5J8 1434 aa20.57■□□□□ 0.88
SHKBP1-208ENST00000595726 PARD3Q8TEW0 1356 aa20.57■□□□□ 0.88
SHKBP1-208ENST00000595726 ADGRB2O60241 1585 aa20.56■□□□□ 0.88
SHKBP1-208ENST00000595726 KCNQ2O43526 872 aa20.56■□□□□ 0.88
SHKBP1-208ENST00000595726 ALS2Q96Q42 1657 aa20.56■□□□□ 0.88
SHKBP1-208ENST00000595726 KIAA0232Q92628 1395 aa20.56■□□□□ 0.88
SHKBP1-208ENST00000595726 DCAF8L1A6NGE4 600 aa20.55■□□□□ 0.88
SHKBP1-208ENST00000595726 ZC3H6P61129 1189 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-208ENST00000595726 PDE3BQ13370 1112 aa20.55■□□□□ 0.88
SHKBP1-208ENST00000595726 MINK1Q8N4C8 1332 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-208ENST00000595726 NGDNQ8NEJ9 315 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-208ENST00000595726 MPHOSPH9Q99550 1183 aa20.54■□□□□ 0.88
SHKBP1-208ENST00000595726 NUTM2GQ5VZR2 741 aa20.52■□□□□ 0.88
SHKBP1-208ENST00000595726 TRAK1Q9UPV9 953 aa20.52■□□□□ 0.88
SHKBP1-208ENST00000595726 NUP188Q5SRE5 1749 aa20.51■□□□□ 0.87
SHKBP1-208ENST00000595726 EVA1CP58658 441 aa20.51■□□□□ 0.87
SHKBP1-208ENST00000595726 RREB1Q92766 1687 aa20.51■□□□□ 0.87
SHKBP1-208ENST00000595726 CRYBG1Q9Y4K1 1723 aa20.5■□□□□ 0.87
SHKBP1-208ENST00000595726 NINLQ9Y2I6 1382 aa20.49■□□□□ 0.87
SHKBP1-208ENST00000595726 LARP1Q6PKG0 1096 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-208ENST00000595726 CAMTA1Q9Y6Y1 1673 aa20.48■□□□□ 0.87
SHKBP1-208ENST00000595726 WASLO00401 505 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-208ENST00000595726 BARGINQ6ZT62 677 aa20.48■□□□□ 0.87
SHKBP1-208ENST00000595726 ZNF784Q8NCA9 323 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-208ENST00000595726 PDGFDQ9GZP0 370 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-208ENST00000595726 DLC1Q96QB1 1528 aa20.45■□□□□ 0.86
SHKBP1-208ENST00000595726 SSH2Q76I76 1423 aa20.44■□□□□ 0.86
SHKBP1-208ENST00000595726 TCP11L2Q8N4U5 519 aa20.44■□□□□ 0.86
SHKBP1-208ENST00000595726 ANO8Q9HCE9 1232 aaPredicted RBP20.44■□□□□ 0.86
SHKBP1-208ENST00000595726 TULP4Q9NRJ4 1543 aa20.43■□□□□ 0.86
SHKBP1-208ENST00000595726 PTF1AQ7RTS3 328 aa20.42■□□□□ 0.86
SHKBP1-208ENST00000595726 SENP3-EIF4A1A0A087X0R7 540 aa20.41■□□□□ 0.86
SHKBP1-208ENST00000595726 ZBTB7AO95365 584 aa20.41■□□□□ 0.86
SHKBP1-208ENST00000595726 NUDT16Q96DE0 195 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-208ENST00000595726 EIF3AQ14152 1382 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-208ENST00000595726 ADGRB1O14514 1584 aa20.39■□□□□ 0.85
SHKBP1-208ENST00000595726 ATF5Q9Y2D1 282 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-208ENST00000595726 CEP350Q5VT06 3117 aa20.39■□□□□ 0.85
SHKBP1-208ENST00000595726 PHRF1Q9P1Y6 1649 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-208ENST00000595726 KDM2AQ9Y2K7 1162 aa20.37■□□□□ 0.85
SHKBP1-208ENST00000595726 PLSCR1O15162 318 aa20.36■□□□□ 0.85
SHKBP1-208ENST00000595726 PTGER2P43116 358 aa20.36■□□□□ 0.85
SHKBP1-208ENST00000595726 PROM2Q8N271 834 aa20.36■□□□□ 0.85
SHKBP1-208ENST00000595726 NRKQ7Z2Y5 1582 aa20.36■□□□□ 0.85
SHKBP1-208ENST00000595726 BCL11BQ9C0K0 894 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-208ENST00000595726 THRAP3Q9Y2W1 955 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-208ENST00000595726 ACEP12821 1306 aa20.34■□□□□ 0.85
SHKBP1-208ENST00000595726 C1QTNF8P60827 252 aa20.34■□□□□ 0.85
SHKBP1-208ENST00000595726 ABTB2Q8N961 1025 aa20.34■□□□□ 0.85
SHKBP1-208ENST00000595726 ATP7BP35670 1465 aa20.33■□□□□ 0.85
SHKBP1-208ENST00000595726 CDK19Q9BWU1 502 aa20.33■□□□□ 0.85
SHKBP1-208ENST00000595726 FHDC1Q9C0D6 1143 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-208ENST00000595726 SYT17Q9BSW7 474 aa20.32■□□□□ 0.84
SHKBP1-208ENST00000595726 ZBTB7CA1YPR0 619 aa20.31■□□□□ 0.84
SHKBP1-208ENST00000595726 CPDO75976 1380 aa20.31■□□□□ 0.84
SHKBP1-208ENST00000595726 CASZ1Q86V15 1759 aa20.31■□□□□ 0.84
SHKBP1-208ENST00000595726 GOLGB1Q14789 3259 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 OVOS2A0A0G2JMS6 1433 aa20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 OVOS2A0A0J9YW53 1432 aa20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 OVOS2Q6IE36 1432 aa20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 MYOM1P52179 1685 aa20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 GCP02774 474 aa20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 IFFO2Q5TF58 517 aa20.3■□□□□ 0.84
SHKBP1-208ENST00000595726 LMO7Q8WWI1 1683 aa20.29■□□□□ 0.84
SHKBP1-208ENST00000595726 C11orf95C9JLR9 678 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-208ENST00000595726 DCAF11Q8TEB1 546 aa20.29■□□□□ 0.84
SHKBP1-208ENST00000595726 DDB1Q16531 1140 aa20.28■□□□□ 0.84
SHKBP1-208ENST00000595726 POLR3AO14802 1390 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-208ENST00000595726 USP19O94966 1318 aa20.27■□□□□ 0.84
SHKBP1-208ENST00000595726 PEAK1Q9H792 1746 aa20.27■□□□□ 0.84
SHKBP1-208ENST00000595726 PARP4Q9UKK3 1724 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-208ENST00000595726 COL5A2P05997 1499 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-208ENST00000595726 MARCH10Q8NA82 808 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-208ENST00000595726 CCDC61Q9Y6R9 512 aa20.26■□□□□ 0.83
SHKBP1-208ENST00000595726 CRB1P82279 1406 aa20.26■□□□□ 0.83
SHKBP1-208ENST00000595726 PLEKHG3A1L390 1219 aa20.25■□□□□ 0.83
SHKBP1-208ENST00000595726 TXNRD1Q16881 649 aa20.25■□□□□ 0.83
SHKBP1-208ENST00000595726 NLRP13Q86W25 1043 aa20.25■□□□□ 0.83
SHKBP1-208ENST00000595726 STK32BQ9NY57 414 aa20.25■□□□□ 0.83
SHKBP1-208ENST00000595726 SLC15A2Q16348 729 aa20.24■□□□□ 0.83
SHKBP1-208ENST00000595726 ITSN1Q15811 1721 aa20.24■□□□□ 0.83
SHKBP1-208ENST00000595726 SBF2Q86WG5 1849 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms