RNA–Protein interactions for RNA: ENST00000590180.1

TPM4-212, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-212ENST00000590180 TIMELESSQ9UNS1 1208 aa17.06■□□□□ 0.32
TPM4-212ENST00000590180 QRICH2Q9H0J4 1663 aa17.06■□□□□ 0.32
TPM4-212ENST00000590180 GJD4Q96KN9 370 aaPredicted RBP17.05■□□□□ 0.32
TPM4-212ENST00000590180 CCDC9Q9Y3X0 531 aaKnown RBP17.05■□□□□ 0.32
TPM4-212ENST00000590180 BCL9LQ86UU0 1499 aa17.05■□□□□ 0.32
TPM4-212ENST00000590180 RALGAPBQ86X10 1494 aa17.05■□□□□ 0.32
TPM4-212ENST00000590180 ITSN1Q15811 1721 aa17.04■□□□□ 0.32
TPM4-212ENST00000590180 ST20-MTHFSA0A0A6YYL1 179 aa17.04■□□□□ 0.32
TPM4-212ENST00000590180 TMC1Q8TDI8 760 aa17.04■□□□□ 0.32
TPM4-212ENST00000590180 ZNF692Q9BU19 519 aaPredicted RBP17.04■□□□□ 0.32
TPM4-212ENST00000590180 ZC3H6P61129 1189 aaKnown RBP17.03■□□□□ 0.32
TPM4-212ENST00000590180 NLRP13Q86W25 1043 aa17.03■□□□□ 0.32
TPM4-212ENST00000590180 PRDM11Q9NQV5 511 aa17.03■□□□□ 0.32
TPM4-212ENST00000590180 ATRNO75882 1429 aa17.03■□□□□ 0.32
TPM4-212ENST00000590180 TRPM3Q9HCF6 1732 aaPredicted RBP17.02■□□□□ 0.32
TPM4-212ENST00000590180 BTG4Q9NY30 223 aa17.02■□□□□ 0.32
TPM4-212ENST00000590180 NLRP6P59044 892 aa17.01■□□□□ 0.31
TPM4-212ENST00000590180 ATAD2Q6PL18 1390 aa17.01■□□□□ 0.31
TPM4-212ENST00000590180 SLIT2O94813 1529 aa17.01■□□□□ 0.31
TPM4-212ENST00000590180 CDK12Q9NYV4 1490 aaPredicted RBP17■□□□□ 0.31
TPM4-212ENST00000590180 CHRNA2Q15822 529 aa17■□□□□ 0.31
TPM4-212ENST00000590180 VPS72Q15906 364 aa17■□□□□ 0.31
TPM4-212ENST00000590180 SLC24A1O60721 1099 aa16.99■□□□□ 0.31
TPM4-212ENST00000590180 SBNO2Q9Y2G9 1366 aa16.99■□□□□ 0.31
TPM4-212ENST00000590180 MARF1Q9Y4F3 1742 aaKnown RBP16.99■□□□□ 0.31
TPM4-212ENST00000590180 TOPAZ1Q8N9V7 1692 aa16.98■□□□□ 0.31
TPM4-212ENST00000590180 ALS2Q96Q42 1657 aa16.98■□□□□ 0.31
TPM4-212ENST00000590180 UPF1Q92900 1129 aaKnown RBP eCLIP16.98■□□□□ 0.31
TPM4-212ENST00000590180 SLC12A5Q9H2X9 1139 aa16.98■□□□□ 0.31
TPM4-212ENST00000590180 BRD4O60885 1362 aaPredicted RBP16.98■□□□□ 0.31
TPM4-212ENST00000590180 RGS12O14924 1447 aa16.97■□□□□ 0.31
TPM4-212ENST00000590180 ZBTB7CA1YPR0 619 aa16.97■□□□□ 0.31
TPM4-212ENST00000590180 GCP02774 474 aa16.97■□□□□ 0.31
TPM4-212ENST00000590180 EVA1CP58658 441 aa16.97■□□□□ 0.31
TPM4-212ENST00000590180 TESK2Q96S53 571 aa16.97■□□□□ 0.31
TPM4-212ENST00000590180 KIAA0232Q92628 1395 aa16.97■□□□□ 0.31
TPM4-212ENST00000590180 TTC21BQ7Z4L5 1316 aa16.96■□□□□ 0.31
TPM4-212ENST00000590180 USP6P35125 1406 aa16.96■□□□□ 0.31
TPM4-212ENST00000590180 HDGFL2Q7Z4V5 671 aaPredicted RBP16.96■□□□□ 0.31
TPM4-212ENST00000590180 STRN4Q9NRL3 753 aa16.96■□□□□ 0.31
TPM4-212ENST00000590180 KTN1Q86UP2 1357 aaKnown RBP16.95■□□□□ 0.3
TPM4-212ENST00000590180 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.95■□□□□ 0.3
TPM4-212ENST00000590180 PUS7Q96PZ0 661 aaKnown RBP16.95■□□□□ 0.3
TPM4-212ENST00000590180 A0A0G2JS52 829 aa16.94■□□□□ 0.3
TPM4-212ENST00000590180 TMF1P82094 1093 aa16.94■□□□□ 0.3
TPM4-212ENST00000590180 MYT1Q01538 1121 aa16.94■□□□□ 0.3
TPM4-212ENST00000590180 SEPT12Q8IYM1 358 aa16.94■□□□□ 0.3
TPM4-212ENST00000590180 USP47Q96K76 1375 aa16.93■□□□□ 0.3
TPM4-212ENST00000590180 TERF2IPQ9NYB0 399 aa16.93■□□□□ 0.3
TPM4-212ENST00000590180 USP19O94966 1318 aa16.93■□□□□ 0.3
TPM4-212ENST00000590180 SOX12O15370 315 aa16.92■□□□□ 0.3
TPM4-212ENST00000590180 FAM98CQ17RN3 349 aaKnown RBP16.92■□□□□ 0.3
TPM4-212ENST00000590180 TTC21AQ8NDW8 1320 aa16.92■□□□□ 0.3
TPM4-212ENST00000590180 ABCA3Q99758 1704 aa16.91■□□□□ 0.3
TPM4-212ENST00000590180 SSH2Q76I76 1423 aa16.91■□□□□ 0.3
TPM4-212ENST00000590180 CPSF1Q10570 1443 aaKnown RBP16.9■□□□□ 0.3
TPM4-212ENST00000590180 ONECUT3O60422 494 aaPredicted RBP16.9■□□□□ 0.3
TPM4-212ENST00000590180 KCNH5Q8NCM2 988 aa16.89■□□□□ 0.29
TPM4-212ENST00000590180 USP35Q9P2H5 1018 aa16.89■□□□□ 0.29
TPM4-212ENST00000590180 ZRANB1Q9UGI0 708 aa16.89■□□□□ 0.29
TPM4-212ENST00000590180 SPATA31A5Q5VU36 1347 aa16.89■□□□□ 0.29
TPM4-212ENST00000590180 SPATA31A7Q8IWB4 1347 aa16.89■□□□□ 0.29
TPM4-212ENST00000590180 COL14A1Q05707 1796 aaKnown RBP16.89■□□□□ 0.29
TPM4-212ENST00000590180 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.88■□□□□ 0.29
TPM4-212ENST00000590180 CDCA8Q53HL2 280 aa16.88■□□□□ 0.29
TPM4-212ENST00000590180 NME9Q86XW9 330 aa16.88■□□□□ 0.29
TPM4-212ENST00000590180 CPDO75976 1380 aa16.88■□□□□ 0.29
TPM4-212ENST00000590180 PLCH1Q4KWH8 1693 aa16.88■□□□□ 0.29
TPM4-212ENST00000590180 NWD2Q9ULI1 1742 aa16.87■□□□□ 0.29
TPM4-212ENST00000590180 GLI3P10071 1580 aa16.87■□□□□ 0.29
TPM4-212ENST00000590180 KRT27Q7Z3Y8 459 aa16.87■□□□□ 0.29
TPM4-212ENST00000590180 LARP1Q6PKG0 1096 aaKnown RBP16.86■□□□□ 0.29
TPM4-212ENST00000590180 SPATA31A1Q5TZJ5 1347 aa16.85■□□□□ 0.29
TPM4-212ENST00000590180 CRYBG1Q9Y4K1 1723 aa16.84■□□□□ 0.29
TPM4-212ENST00000590180 ARHGEF25Q86VW2 580 aa16.84■□□□□ 0.29
TPM4-212ENST00000590180 POLR3GLQ9BT43 218 aa16.84■□□□□ 0.29
TPM4-212ENST00000590180 PHRF1Q9P1Y6 1649 aaKnown RBP16.84■□□□□ 0.29
TPM4-212ENST00000590180 A0A1W2PP64 1363 aa16.83■□□□□ 0.28
TPM4-212ENST00000590180 EIF4G2P78344 907 aaKnown RBP eCLIP16.83■□□□□ 0.28
TPM4-212ENST00000590180 CD163L1Q9NR16 1453 aa16.83■□□□□ 0.28
TPM4-212ENST00000590180 NINLQ9Y2I6 1382 aa16.83■□□□□ 0.28
TPM4-212ENST00000590180 AKAP12Q02952 1782 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 CAMTA1Q9Y6Y1 1673 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 AATKQ6ZMQ8 1374 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 TOM1L2Q6ZVM7 507 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 CCDC125Q86Z20 511 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 TCP11L2Q8N4U5 519 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 AXIN2Q9Y2T1 843 aa16.82■□□□□ 0.28
TPM4-212ENST00000590180 NRKQ7Z2Y5 1582 aa16.81■□□□□ 0.28
TPM4-212ENST00000590180 EDC4Q6P2E9 1401 aaKnown RBP16.81■□□□□ 0.28
TPM4-212ENST00000590180 USP31Q70CQ4 1352 aa16.81■□□□□ 0.28
TPM4-212ENST00000590180 CSB-PGBD3P0DP91 1061 aa16.81■□□□□ 0.28
TPM4-212ENST00000590180 NRAPQ86VF7 1730 aa16.8■□□□□ 0.28
TPM4-212ENST00000590180 HSPA5P11021 654 aaKnown RBP16.8■□□□□ 0.28
TPM4-212ENST00000590180 FAM182BQ5T319 152 aa16.8■□□□□ 0.28
TPM4-212ENST00000590180 PIK3C2AO00443 1686 aa16.8■□□□□ 0.28
TPM4-212ENST00000590180 SLIT3O75094 1523 aa16.8■□□□□ 0.28
TPM4-212ENST00000590180 SF3B2Q13435 895 aaKnown RBP16.79■□□□□ 0.28
TPM4-212ENST00000590180 BARGINQ6ZT62 677 aa16.79■□□□□ 0.28
TPM4-212ENST00000590180 COG3Q96JB2 828 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms