RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 ROBO1Q9Y6N7 1651 aa30.11■■■□□ 2.41
ATG4D-209ENST00000588857 PMFBP1Q8TBY8 1022 aa30.11■■■□□ 2.41
ATG4D-209ENST00000588857 BRD4O60885 1362 aaPredicted RBP30.1■■■□□ 2.41
ATG4D-209ENST00000588857 NGDNQ8NEJ9 315 aaKnown RBP30.1■■■□□ 2.41
ATG4D-209ENST00000588857 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.09■■■□□ 2.41
ATG4D-209ENST00000588857 POLR3AO14802 1390 aaPredicted RBP30.09■■■□□ 2.41
ATG4D-209ENST00000588857 FYB1O15117 783 aa30.07■■■□□ 2.4
ATG4D-209ENST00000588857 PPP2R1AP30153 589 aa30.07■■■□□ 2.4
ATG4D-209ENST00000588857 YTHDC1Q96MU7 727 aaKnown RBP30.07■■■□□ 2.4
ATG4D-209ENST00000588857 USP6P35125 1406 aa30.06■■■□□ 2.4
ATG4D-209ENST00000588857 MST1RQ04912 1400 aa30.06■■■□□ 2.4
ATG4D-209ENST00000588857 BRINP3Q76B58 766 aa30.06■■■□□ 2.4
ATG4D-209ENST00000588857 PHF8Q9UPP1 1060 aa30.06■■■□□ 2.4
ATG4D-209ENST00000588857 NRKQ7Z2Y5 1582 aa30.05■■■□□ 2.4
ATG4D-209ENST00000588857 ESCO1Q5FWF5 840 aa30.05■■■□□ 2.4
ATG4D-209ENST00000588857 GGNBP2Q9H3C7 697 aa30.05■■■□□ 2.4
ATG4D-209ENST00000588857 TNNT2P45379 298 aaPredicted RBP30■■■□□ 2.39
ATG4D-209ENST00000588857 C1orf167Q5SNV9 1468 aa30■■■□□ 2.39
ATG4D-209ENST00000588857 TTC21BQ7Z4L5 1316 aa30■■■□□ 2.39
ATG4D-209ENST00000588857 KIF1AQ12756 1690 aa29.98■■■□□ 2.39
ATG4D-209ENST00000588857 NME9Q86XW9 330 aa29.98■■■□□ 2.39
ATG4D-209ENST00000588857 FAM9BQ8IZU0 186 aa29.96■■■□□ 2.39
ATG4D-209ENST00000588857 ORAI2Q96SN7 254 aa29.96■■■□□ 2.39
ATG4D-209ENST00000588857 TTC21AQ8NDW8 1320 aa29.96■■■□□ 2.39
ATG4D-209ENST00000588857 SSH2Q76I76 1423 aa29.96■■■□□ 2.39
ATG4D-209ENST00000588857 COG3Q96JB2 828 aa29.94■■■□□ 2.38
ATG4D-209ENST00000588857 PSME1Q06323 249 aa29.93■■■□□ 2.38
ATG4D-209ENST00000588857 PNISRQ8TF01 805 aaKnown RBP29.93■■■□□ 2.38
ATG4D-209ENST00000588857 AHDC1Q5TGY3 1603 aaPredicted RBP29.91■■■□□ 2.38
ATG4D-209ENST00000588857 MED1Q15648 1581 aaPredicted RBP29.91■■■□□ 2.38
ATG4D-209ENST00000588857 PHLPP1O60346 1717 aa29.9■■■□□ 2.38
ATG4D-209ENST00000588857 JCADQ9P266 1359 aa29.9■■■□□ 2.38
ATG4D-209ENST00000588857 ZRANB1Q9UGI0 708 aa29.89■■■□□ 2.38
ATG4D-209ENST00000588857 MAP2P11137 1827 aaKnown RBP29.87■■■□□ 2.37
ATG4D-209ENST00000588857 FOXO3O43524 673 aa29.87■■■□□ 2.37
ATG4D-209ENST00000588857 PAK3O75914 559 aaPredicted RBP29.87■■■□□ 2.37
ATG4D-209ENST00000588857 DDX17Q92841 729 aaKnown RBP29.87■■■□□ 2.37
ATG4D-209ENST00000588857 COL16A1Q07092 1604 aaPredicted RBP29.87■■■□□ 2.37
ATG4D-209ENST00000588857 MTHFSP49914 203 aa29.86■■■□□ 2.37
ATG4D-209ENST00000588857 PIK3C2AO00443 1686 aa29.86■■■□□ 2.37
ATG4D-209ENST00000588857 CFAP53Q96M91 514 aa29.84■■■□□ 2.37
ATG4D-209ENST00000588857 OVOS2A0A0J9YW53 1432 aa29.83■■■□□ 2.37
ATG4D-209ENST00000588857 OVOS2Q6IE36 1432 aa29.83■■■□□ 2.37
ATG4D-209ENST00000588857 LRRC59Q96AG4 307 aaKnown RBP29.82■■■□□ 2.36
ATG4D-209ENST00000588857 USP31Q70CQ4 1352 aa29.82■■■□□ 2.36
ATG4D-209ENST00000588857 ABTB2Q8N961 1025 aa29.81■■■□□ 2.36
ATG4D-209ENST00000588857 PHF23Q9BUL5 403 aaPredicted RBP29.81■■■□□ 2.36
ATG4D-209ENST00000588857 ILDR2Q71H61 639 aa29.81■■■□□ 2.36
ATG4D-209ENST00000588857 AATKQ6ZMQ8 1374 aa29.8■■■□□ 2.36
ATG4D-209ENST00000588857 USP54Q70EL1 1684 aa29.8■■■□□ 2.36
ATG4D-209ENST00000588857 WDR43Q15061 677 aaKnown RBP eCLIP29.8■■■□□ 2.36
ATG4D-209ENST00000588857 NLRP6P59044 892 aa29.79■■■□□ 2.36
ATG4D-209ENST00000588857 KRT28Q7Z3Y7 464 aa29.79■■■□□ 2.36
ATG4D-209ENST00000588857 XPCQ01831 940 aaPredicted RBP29.78■■■□□ 2.36
ATG4D-209ENST00000588857 SPATA31A6Q5VVP1 1343 aa29.78■■■□□ 2.36
ATG4D-209ENST00000588857 TRPM3Q9HCF6 1732 aaPredicted RBP29.78■■■□□ 2.36
ATG4D-209ENST00000588857 SOS2Q07890 1332 aaPredicted RBP29.77■■■□□ 2.36
ATG4D-209ENST00000588857 NPHP3Q7Z494 1330 aa29.76■■■□□ 2.36
ATG4D-209ENST00000588857 NHSL1Q5SYE7 1610 aa29.76■■■□□ 2.36
ATG4D-209ENST00000588857 CENPBP07199 599 aaPredicted RBP29.76■■■□□ 2.35
ATG4D-209ENST00000588857 HNRNPUQ00839 825 aaKnown RBP eCLIP29.76■■■□□ 2.35
ATG4D-209ENST00000588857 MARF1Q9Y4F3 1742 aaKnown RBP29.76■■■□□ 2.35
ATG4D-209ENST00000588857 POLKQ9UBT6 870 aa29.75■■■□□ 2.35
ATG4D-209ENST00000588857 FBLN1P23142 703 aa29.74■■■□□ 2.35
ATG4D-209ENST00000588857 NUTM2GQ5VZR2 741 aa29.74■■■□□ 2.35
ATG4D-209ENST00000588857 PPM1GO15355 546 aaPredicted RBP29.73■■■□□ 2.35
ATG4D-209ENST00000588857 SHPRHQ149N8 1683 aa29.72■■■□□ 2.35
ATG4D-209ENST00000588857 ADAMTS8Q9UP79 889 aa29.71■■■□□ 2.35
ATG4D-209ENST00000588857 SMG6Q86US8 1419 aaKnown RBP29.7■■■□□ 2.35
ATG4D-209ENST00000588857 INSRP06213 1382 aa29.7■■■□□ 2.35
ATG4D-209ENST00000588857 RGS17Q9UGC6 210 aaPredicted RBP29.7■■■□□ 2.35
ATG4D-209ENST00000588857 SOX12O15370 315 aa29.69■■■□□ 2.34
ATG4D-209ENST00000588857 EMILIN1Q9Y6C2 1016 aa29.69■■■□□ 2.34
ATG4D-209ENST00000588857 RRS1Q15050 365 aaKnown RBP29.69■■■□□ 2.34
ATG4D-209ENST00000588857 LMOD2Q6P5Q4 547 aa29.69■■■□□ 2.34
ATG4D-209ENST00000588857 ALS2Q96Q42 1657 aa29.68■■■□□ 2.34
ATG4D-209ENST00000588857 PNPLA6Q8IY17 1366 aa29.68■■■□□ 2.34
ATG4D-209ENST00000588857 CDK12Q9NYV4 1490 aaPredicted RBP29.68■■■□□ 2.34
ATG4D-209ENST00000588857 SBNO1A3KN83 1393 aa29.67■■■□□ 2.34
ATG4D-209ENST00000588857 COL3A1P02461 1466 aaPredicted RBP29.67■■■□□ 2.34
ATG4D-209ENST00000588857 PXDNQ92626 1479 aa29.67■■■□□ 2.34
ATG4D-209ENST00000588857 NUDCQ9Y266 331 aa29.66■■■□□ 2.34
ATG4D-209ENST00000588857 NUTM2BA6NNL0 878 aaPredicted RBP29.65■■■□□ 2.34
ATG4D-209ENST00000588857 NUTM2EB1AL46 878 aaPredicted RBP29.65■■■□□ 2.34
ATG4D-209ENST00000588857 NUTM2AQ8IVF1 878 aaPredicted RBP29.65■■■□□ 2.34
ATG4D-209ENST00000588857 LRP6O75581 1613 aa29.64■■■□□ 2.34
ATG4D-209ENST00000588857 BLMP54132 1417 aaPredicted RBP29.64■■■□□ 2.34
ATG4D-209ENST00000588857 DIAPH1O60610 1272 aaKnown RBP29.64■■■□□ 2.33
ATG4D-209ENST00000588857 MEX3CQ5U5Q3 659 aaKnown RBP29.63■■■□□ 2.33
ATG4D-209ENST00000588857 KCNH5Q8NCM2 988 aa29.61■■■□□ 2.33
ATG4D-209ENST00000588857 TNS3Q68CZ2 1445 aa29.61■■■□□ 2.33
ATG4D-209ENST00000588857 PEAK1Q9H792 1746 aa29.59■■■□□ 2.33
ATG4D-209ENST00000588857 MAP3K19Q56UN5 1328 aa29.59■■■□□ 2.33
ATG4D-209ENST00000588857 LTN1O94822 1766 aa29.59■■■□□ 2.33
ATG4D-209ENST00000588857 U2SURPO15042 1029 aaKnown RBP29.58■■■□□ 2.33
ATG4D-209ENST00000588857 U2AF1L5P0DN76 240 aaPredicted RBP29.58■■■□□ 2.33
ATG4D-209ENST00000588857 U2AF1Q01081 240 aaKnown RBP eCLIP29.58■■■□□ 2.33
ATG4D-209ENST00000588857 SPATA31A3Q5VYP0 1347 aa29.58■■■□□ 2.33
ATG4D-209ENST00000588857 SLIT3O75094 1523 aa29.58■■■□□ 2.33
ATG4D-209ENST00000588857 AMPHP49418 695 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms