RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 KRT28Q7Z3Y7 464 aa16.82■□□□□ 0.28
CCDC47-206ENST00000584112 SGIP1Q9BQI5 828 aa16.81■□□□□ 0.28
CCDC47-206ENST00000584112 NEXMIFQ5QGS0 1516 aa16.8■□□□□ 0.28
CCDC47-206ENST00000584112 NAIPQ13075 1403 aa16.79■□□□□ 0.28
CCDC47-206ENST00000584112 TNS3Q68CZ2 1445 aa16.79■□□□□ 0.28
CCDC47-206ENST00000584112 PCNTO95613 3336 aa16.78■□□□□ 0.28
CCDC47-206ENST00000584112 LMOD2Q6P5Q4 547 aa16.78■□□□□ 0.28
CCDC47-206ENST00000584112 CDC42BPGQ6DT37 1551 aa16.77■□□□□ 0.28
CCDC47-206ENST00000584112 ZNF526Q8TF50 670 aaPredicted RBP16.77■□□□□ 0.28
CCDC47-206ENST00000584112 GPBP1L1Q9HC44 474 aaPredicted RBP16.77■□□□□ 0.28
CCDC47-206ENST00000584112 CCDC144AA2RUR9 1427 aa16.77■□□□□ 0.27
CCDC47-206ENST00000584112 ARXQ96QS3 562 aa16.76■□□□□ 0.27
CCDC47-206ENST00000584112 HFM1A2PYH4 1435 aa16.76■□□□□ 0.27
CCDC47-206ENST00000584112 COL14A1Q05707 1796 aaKnown RBP16.75■□□□□ 0.27
CCDC47-206ENST00000584112 CLTCL1P53675 1640 aa16.74■□□□□ 0.27
CCDC47-206ENST00000584112 BCL11BQ9C0K0 894 aaPredicted RBP16.74■□□□□ 0.27
CCDC47-206ENST00000584112 MAP3K5Q99683 1374 aa16.74■□□□□ 0.27
CCDC47-206ENST00000584112 SPATA31A1Q5TZJ5 1347 aa16.73■□□□□ 0.27
CCDC47-206ENST00000584112 APLP1P51693 650 aa16.73■□□□□ 0.27
CCDC47-206ENST00000584112 ZNF326Q5BKZ1 582 aaKnown RBP16.73■□□□□ 0.27
CCDC47-206ENST00000584112 PDE3BQ13370 1112 aa16.72■□□□□ 0.27
CCDC47-206ENST00000584112 MTFR1LQ9H019 292 aa16.72■□□□□ 0.27
CCDC47-206ENST00000584112 KLHL34Q8N239 644 aa16.71■□□□□ 0.27
CCDC47-206ENST00000584112 KIF1AQ12756 1690 aa16.7■□□□□ 0.26
CCDC47-206ENST00000584112 RGPD3A6NKT7 1758 aaPredicted RBP16.69■□□□□ 0.26
CCDC47-206ENST00000584112 RGPD4Q7Z3J3 1758 aa16.69■□□□□ 0.26
CCDC47-206ENST00000584112 PROM2Q8N271 834 aa16.69■□□□□ 0.26
CCDC47-206ENST00000584112 TECPR2O15040 1411 aa16.69■□□□□ 0.26
CCDC47-206ENST00000584112 YBX3P16989 372 aaKnown RBP eCLIP16.68■□□□□ 0.26
CCDC47-206ENST00000584112 PTF1AQ7RTS3 328 aa16.68■□□□□ 0.26
CCDC47-206ENST00000584112 USP35Q9P2H5 1018 aa16.68■□□□□ 0.26
CCDC47-206ENST00000584112 WWC3Q9ULE0 1092 aa16.68■□□□□ 0.26
CCDC47-206ENST00000584112 RGPD8O14715 1765 aaPredicted RBP16.66■□□□□ 0.26
CCDC47-206ENST00000584112 PRAG1Q86YV5 1406 aa16.65■□□□□ 0.26
CCDC47-206ENST00000584112 PPLO60437 1756 aa16.65■□□□□ 0.26
CCDC47-206ENST00000584112 HTRA3P83110 453 aa16.65■□□□□ 0.26
CCDC47-206ENST00000584112 NLGN2Q8NFZ4 835 aa16.65■□□□□ 0.26
CCDC47-206ENST00000584112 STRN4Q9NRL3 753 aa16.65■□□□□ 0.26
CCDC47-206ENST00000584112 STK32BQ9NY57 414 aa16.65■□□□□ 0.26
CCDC47-206ENST00000584112 ARHGEF10O15013 1369 aa16.64■□□□□ 0.26
CCDC47-206ENST00000584112 PLSCR1O15162 318 aa16.64■□□□□ 0.25
CCDC47-206ENST00000584112 PSME1Q06323 249 aa16.64■□□□□ 0.25
CCDC47-206ENST00000584112 SBNO1A3KN83 1393 aa16.64■□□□□ 0.25
CCDC47-206ENST00000584112 SBF2Q86WG5 1849 aa16.63■□□□□ 0.25
CCDC47-206ENST00000584112 FMN2Q9NZ56 1722 aa16.63■□□□□ 0.25
CCDC47-206ENST00000584112 KIF3CO14782 793 aa16.63■□□□□ 0.25
CCDC47-206ENST00000584112 SLC15A2Q16348 729 aa16.63■□□□□ 0.25
CCDC47-206ENST00000584112 SLC4A1APQ9BWU0 796 aaKnown RBP16.63■□□□□ 0.25
CCDC47-206ENST00000584112 WDR90Q96KV7 1748 aa16.62■□□□□ 0.25
CCDC47-206ENST00000584112 WAPLQ7Z5K2 1190 aa16.61■□□□□ 0.25
CCDC47-206ENST00000584112 JMYQ8N9B5 988 aa16.61■□□□□ 0.25
CCDC47-206ENST00000584112 ADCY9O60503 1353 aa16.61■□□□□ 0.25
CCDC47-206ENST00000584112 KLRG1Q96E93 195 aa16.6■□□□□ 0.25
CCDC47-206ENST00000584112 PHF8Q9UPP1 1060 aa16.6■□□□□ 0.25
CCDC47-206ENST00000584112 CHRNA2Q15822 529 aa16.59■□□□□ 0.25
CCDC47-206ENST00000584112 PRDM11Q9NQV5 511 aa16.59■□□□□ 0.25
CCDC47-206ENST00000584112 ACIN1Q9UKV3 1341 aaKnown RBP16.59■□□□□ 0.25
CCDC47-206ENST00000584112 GRIN3BO60391 1043 aa16.58■□□□□ 0.24
CCDC47-206ENST00000584112 PEAK1Q9H792 1746 aa16.58■□□□□ 0.24
CCDC47-206ENST00000584112 IFT172Q9UG01 1749 aa16.57■□□□□ 0.24
CCDC47-206ENST00000584112 BARGINQ6ZT62 677 aa16.57■□□□□ 0.24
CCDC47-206ENST00000584112 PLEKHH1Q9ULM0 1364 aa16.55■□□□□ 0.24
CCDC47-206ENST00000584112 RPGRIP1LQ68CZ1 1315 aa16.55■□□□□ 0.24
CCDC47-206ENST00000584112 VGFO15240 615 aaPredicted RBP16.55■□□□□ 0.24
CCDC47-206ENST00000584112 TNS2Q63HR2 1409 aa16.54■□□□□ 0.24
CCDC47-206ENST00000584112 CRYBG1Q9Y4K1 1723 aa16.54■□□□□ 0.24
CCDC47-206ENST00000584112 TXNRD1Q16881 649 aa16.54■□□□□ 0.24
CCDC47-206ENST00000584112 NRXN1Q9ULB1 1477 aa16.54■□□□□ 0.24
CCDC47-206ENST00000584112 STK26Q9P289 416 aa16.53■□□□□ 0.24
CCDC47-206ENST00000584112 TRPM3Q9HCF6 1732 aaPredicted RBP16.53■□□□□ 0.24
CCDC47-206ENST00000584112 FAM161AQ3B820 660 aa16.52■□□□□ 0.24
CCDC47-206ENST00000584112 ALS2Q96Q42 1657 aa16.52■□□□□ 0.23
CCDC47-206ENST00000584112 OVOS2A0A0G2JMS6 1433 aa16.52■□□□□ 0.23
CCDC47-206ENST00000584112 OVOS2A0A0J9YW53 1432 aa16.52■□□□□ 0.23
CCDC47-206ENST00000584112 OVOS2Q6IE36 1432 aa16.52■□□□□ 0.23
CCDC47-206ENST00000584112 KIAA0232Q92628 1395 aa16.51■□□□□ 0.23
CCDC47-206ENST00000584112 MPHOSPH9Q99550 1183 aa16.51■□□□□ 0.23
CCDC47-206ENST00000584112 AATKQ6ZMQ8 1374 aa16.51■□□□□ 0.23
CCDC47-206ENST00000584112 PARP4Q9UKK3 1724 aaKnown RBP16.5■□□□□ 0.23
CCDC47-206ENST00000584112 LARP1Q6PKG0 1096 aaKnown RBP16.5■□□□□ 0.23
CCDC47-206ENST00000584112 PMFBP1Q8TBY8 1022 aa16.5■□□□□ 0.23
CCDC47-206ENST00000584112 SSH2Q76I76 1423 aa16.49■□□□□ 0.23
CCDC47-206ENST00000584112 TCP11L2Q8N4U5 519 aa16.49■□□□□ 0.23
CCDC47-206ENST00000584112 HSPA1AP0DMV8 641 aaKnown RBP16.48■□□□□ 0.23
CCDC47-206ENST00000584112 HSPA1BP0DMV9 641 aaKnown RBP16.48■□□□□ 0.23
CCDC47-206ENST00000584112 SPATA31E1Q6ZUB1 1445 aa16.47■□□□□ 0.23
CCDC47-206ENST00000584112 EVA1CP58658 441 aa16.47■□□□□ 0.23
CCDC47-206ENST00000584112 TOPAZ1Q8N9V7 1692 aa16.46■□□□□ 0.23
CCDC47-206ENST00000584112 KNDC1Q76NI1 1749 aa16.45■□□□□ 0.22
CCDC47-206ENST00000584112 TOMM70O94826 608 aa16.45■□□□□ 0.22
CCDC47-206ENST00000584112 ZC3H6P61129 1189 aaKnown RBP16.45■□□□□ 0.22
CCDC47-206ENST00000584112 ZNF827Q17R98 1081 aa16.45■□□□□ 0.22
CCDC47-206ENST00000584112 ANKRD30BQ9BXX2 1392 aa16.45■□□□□ 0.22
CCDC47-206ENST00000584112 ATP7BP35670 1465 aa16.45■□□□□ 0.22
CCDC47-206ENST00000584112 DHX57Q6P158 1386 aaKnown RBP16.44■□□□□ 0.22
CCDC47-206ENST00000584112 C11orf95C9JLR9 678 aaPredicted RBP16.44■□□□□ 0.22
CCDC47-206ENST00000584112 POLD1P28340 1107 aa16.44■□□□□ 0.22
CCDC47-206ENST00000584112 RAB3GAP2Q9H2M9 1393 aa16.43■□□□□ 0.22
CCDC47-206ENST00000584112 COL24A1Q17RW2 1714 aa16.43■□□□□ 0.22
CCDC47-206ENST00000584112 PAPPAQ13219 1627 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms