RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 CFAP99D6REC4 459 aa9.89□□□□□ -0.83
SMCHD1-206ENST00000581631 SPTLC1O15269 473 aa9.89□□□□□ -0.83
SMCHD1-206ENST00000581631 VARSP26640 1264 aaKnown RBP9.89□□□□□ -0.83
SMCHD1-206ENST00000581631 PCDHB15Q9Y5E8 787 aa9.89□□□□□ -0.83
SMCHD1-206ENST00000581631 F12P00748 615 aaPredicted RBP9.88□□□□□ -0.83
SMCHD1-206ENST00000581631 NXF1Q9UBU9 619 aaKnown RBP9.88□□□□□ -0.83
SMCHD1-206ENST00000581631 TRIM66O15016 1216 aa9.87□□□□□ -0.83
SMCHD1-206ENST00000581631 KLF16Q9BXK1 252 aaPredicted RBP9.87□□□□□ -0.83
SMCHD1-206ENST00000581631 LORP23490 312 aaPredicted RBP9.86□□□□□ -0.83
SMCHD1-206ENST00000581631 NNTQ13423 1086 aa9.86□□□□□ -0.83
SMCHD1-206ENST00000581631 TIMP2P16035 220 aa9.85□□□□□ -0.83
SMCHD1-206ENST00000581631 HRCP23327 699 aa9.85□□□□□ -0.83
SMCHD1-206ENST00000581631 DIXDC1Q155Q3 683 aa9.85□□□□□ -0.83
SMCHD1-206ENST00000581631 NPAS3Q8IXF0 933 aa9.85□□□□□ -0.83
SMCHD1-206ENST00000581631 ZFP42Q96MM3 310 aa9.84□□□□□ -0.83
SMCHD1-206ENST00000581631 PLEKHG3A1L390 1219 aa9.83□□□□□ -0.84
SMCHD1-206ENST00000581631 PRPF38BQ5VTL8 546 aaKnown RBP9.83□□□□□ -0.84
SMCHD1-206ENST00000581631 CDK15Q96Q40 435 aa9.83□□□□□ -0.84
SMCHD1-206ENST00000581631 MAP10Q9P2G4 905 aa9.83□□□□□ -0.84
SMCHD1-206ENST00000581631 H3BM21 787 aa9.82□□□□□ -0.84
SMCHD1-206ENST00000581631 FOXJ1Q92949 421 aa9.82□□□□□ -0.84
SMCHD1-206ENST00000581631 ZBTB3Q9H5J0 574 aa9.82□□□□□ -0.84
SMCHD1-206ENST00000581631 ADH1CP00326 375 aa9.81□□□□□ -0.84
SMCHD1-206ENST00000581631 GMPRP36959 345 aa9.81□□□□□ -0.84
SMCHD1-206ENST00000581631 C4orf48Q5BLP8 95 aa9.81□□□□□ -0.84
SMCHD1-206ENST00000581631 MRPL14Q6P1L8 145 aaKnown RBP9.81□□□□□ -0.84
SMCHD1-206ENST00000581631 RIC3Q7Z5B4 369 aa9.81□□□□□ -0.84
SMCHD1-206ENST00000581631 CABLES1Q8TDN4 633 aa9.81□□□□□ -0.84
SMCHD1-206ENST00000581631 CTHP32929 405 aa9.8□□□□□ -0.84
SMCHD1-206ENST00000581631 SLC16A10Q8TF71 515 aa9.8□□□□□ -0.84
SMCHD1-206ENST00000581631 ERBB4Q15303 1308 aa9.8□□□□□ -0.84
SMCHD1-206ENST00000581631 PER1O15534 1290 aaPredicted RBP9.79□□□□□ -0.84
SMCHD1-206ENST00000581631 TUSC1Q2TAM9 212 aa9.79□□□□□ -0.84
SMCHD1-206ENST00000581631 FAM174AQ8TBP5 190 aa9.79□□□□□ -0.84
SMCHD1-206ENST00000581631 AK7Q96M32 723 aa9.79□□□□□ -0.84
SMCHD1-206ENST00000581631 LIMD1Q9UGP4 676 aa9.79□□□□□ -0.84
SMCHD1-206ENST00000581631 VEGFBP49765 207 aa9.78□□□□□ -0.84
SMCHD1-206ENST00000581631 WDR4P57081 412 aaKnown RBP9.78□□□□□ -0.84
SMCHD1-206ENST00000581631 NR3C2P08235 984 aa9.77□□□□□ -0.85
SMCHD1-206ENST00000581631 MYSM1Q5VVJ2 828 aa9.77□□□□□ -0.85
SMCHD1-206ENST00000581631 IRF7Q92985 503 aa9.77□□□□□ -0.85
SMCHD1-206ENST00000581631 LILRB3O75022 631 aa9.76□□□□□ -0.85
SMCHD1-206ENST00000581631 GRM5P41594 1212 aa9.76□□□□□ -0.85
SMCHD1-206ENST00000581631 QPCTQ16769 361 aa9.76□□□□□ -0.85
SMCHD1-206ENST00000581631 C1QTNF2Q9BXJ5 285 aa9.76□□□□□ -0.85
SMCHD1-206ENST00000581631 SH3RF1Q7Z6J0 888 aa9.75□□□□□ -0.85
SMCHD1-206ENST00000581631 PURBQ96QR8 312 aaKnown RBP9.75□□□□□ -0.85
SMCHD1-206ENST00000581631 PDE4DQ08499 809 aa9.74□□□□□ -0.85
SMCHD1-206ENST00000581631 ZFAND3Q9H8U3 227 aa9.74□□□□□ -0.85
SMCHD1-206ENST00000581631 VSIG8P0DPA2 414 aa9.73□□□□□ -0.85
SMCHD1-206ENST00000581631 NR5A1Q13285 461 aa9.73□□□□□ -0.85
SMCHD1-206ENST00000581631 ITPKCQ96DU7 683 aa9.73□□□□□ -0.85
SMCHD1-206ENST00000581631 SOBPA7XYQ1 873 aa9.72□□□□□ -0.85
SMCHD1-206ENST00000581631 ZIC2O95409 532 aaPredicted RBP9.72□□□□□ -0.85
SMCHD1-206ENST00000581631 CSPP1Q1MSJ5 1256 aa9.72□□□□□ -0.85
SMCHD1-206ENST00000581631 SCARF1Q14162 830 aa9.71□□□□□ -0.86
SMCHD1-206ENST00000581631 SH3BP5LQ7L8J4 393 aa9.71□□□□□ -0.86
SMCHD1-206ENST00000581631 BPHLQ86WA6 291 aaPredicted RBP9.71□□□□□ -0.86
SMCHD1-206ENST00000581631 ZSCAN1Q8NBB4 408 aa9.7□□□□□ -0.86
SMCHD1-206ENST00000581631 ARID5BQ14865 1188 aa9.69□□□□□ -0.86
SMCHD1-206ENST00000581631 RTL5Q5HYW3 569 aaPredicted RBP9.69□□□□□ -0.86
SMCHD1-206ENST00000581631 TRMT44Q8IYL2 757 aaKnown RBP9.69□□□□□ -0.86
SMCHD1-206ENST00000581631 MEIOBQ8N635 442 aa9.69□□□□□ -0.86
SMCHD1-206ENST00000581631 MAP4K5Q9Y4K4 846 aa9.69□□□□□ -0.86
SMCHD1-206ENST00000581631 ARMC2Q8NEN0 867 aa9.67□□□□□ -0.86
SMCHD1-206ENST00000581631 NUTM2BA6NNL0 878 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 NUTM2EB1AL46 878 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 CLK2P49760 499 aaKnown RBP9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 AGERQ15109 404 aa9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 NUTM2DQ5VT03 806 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 NUTM2AQ8IVF1 878 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 LINC00528Q8N1L1 170 aa9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 SLC24A3Q9HC58 644 aa9.65□□□□□ -0.86
SMCHD1-206ENST00000581631 SOS2Q07890 1332 aaPredicted RBP9.64□□□□□ -0.87
SMCHD1-206ENST00000581631 FAM181BA6NEQ2 426 aa9.64□□□□□ -0.87
SMCHD1-206ENST00000581631 FSHRP23945 695 aa9.64□□□□□ -0.87
SMCHD1-206ENST00000581631 C6orf118Q5T5N4 469 aa9.64□□□□□ -0.87
SMCHD1-206ENST00000581631 NBPF14Q5TI25 921 aa9.64□□□□□ -0.87
SMCHD1-206ENST00000581631 TSC1Q92574 1164 aa9.64□□□□□ -0.87
SMCHD1-206ENST00000581631 HELBQ8NG08 1087 aaPredicted RBP9.63□□□□□ -0.87
SMCHD1-206ENST00000581631 GPKOWQ92917 476 aaPredicted RBP eCLIP9.62□□□□□ -0.87
SMCHD1-206ENST00000581631 DNMT3LQ9UJW3 386 aa9.62□□□□□ -0.87
SMCHD1-206ENST00000581631 PPFIA3O75145 1194 aa9.61□□□□□ -0.87
SMCHD1-206ENST00000581631 FBXO31Q5XUX0 539 aaPredicted RBP9.61□□□□□ -0.87
SMCHD1-206ENST00000581631 MAN1A2O60476 641 aa9.6□□□□□ -0.87
SMCHD1-206ENST00000581631 ERFEQ4G0M1 354 aa9.6□□□□□ -0.87
SMCHD1-206ENST00000581631 VASH1Q7L8A9 365 aaPredicted RBP9.6□□□□□ -0.87
SMCHD1-206ENST00000581631 BMP2P12643 396 aa9.59□□□□□ -0.87
SMCHD1-206ENST00000581631 CTDSPL2Q05D32 466 aa9.59□□□□□ -0.87
SMCHD1-206ENST00000581631 CCDC116Q8IYX3 515 aa9.59□□□□□ -0.87
SMCHD1-206ENST00000581631 EMILIN1Q9Y6C2 1016 aa9.58□□□□□ -0.88
SMCHD1-206ENST00000581631 MAGEB6P1A0A0J9YX57 407 aa9.57□□□□□ -0.88
SMCHD1-206ENST00000581631 Q6ZVU0 165 aa9.57□□□□□ -0.88
SMCHD1-206ENST00000581631 TSEN34Q9BSV6 310 aaKnown RBP9.57□□□□□ -0.88
SMCHD1-206ENST00000581631 RSPH6AQ9H0K4 717 aa9.57□□□□□ -0.88
SMCHD1-206ENST00000581631 UPP2O95045 317 aa9.56□□□□□ -0.88
SMCHD1-206ENST00000581631 PDXDC2PQ6P474 469 aa9.56□□□□□ -0.88
SMCHD1-206ENST00000581631 OCSTAMPQ9BR26 566 aa9.56□□□□□ -0.88
SMCHD1-206ENST00000581631 POLR3EQ9NVU0 708 aa9.56□□□□□ -0.88
SMCHD1-206ENST00000581631 KRT76Q01546 638 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms