RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 DIAPH1O60610 1272 aaKnown RBP14.57□□□□□ -0.08
SKA2-204ENST00000578519 U2AF1L5P0DN76 240 aaPredicted RBP14.57□□□□□ -0.08
SKA2-204ENST00000578519 U2AF1Q01081 240 aaKnown RBP eCLIP14.57□□□□□ -0.081e-7■□□□□ 9.5
SKA2-204ENST00000578519 RIMS1Q86UR5 1692 aaKnown RBP14.56□□□□□ -0.08
SKA2-204ENST00000578519 RRP1P56182 461 aaKnown RBP14.56□□□□□ -0.08
SKA2-204ENST00000578519 CCDC27Q2M243 656 aa14.56□□□□□ -0.08
SKA2-204ENST00000578519 WDR63Q8IWG1 891 aa14.56□□□□□ -0.08
SKA2-204ENST00000578519 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.56□□□□□ -0.08
SKA2-204ENST00000578519 CCDC146Q8IYE0 955 aa14.56□□□□□ -0.08
SKA2-204ENST00000578519 ZNF521Q96K83 1311 aa14.56□□□□□ -0.08
SKA2-204ENST00000578519 SLFN5Q08AF3 891 aa14.55□□□□□ -0.08
SKA2-204ENST00000578519 MAPK8IP3Q9UPT6 1336 aa14.55□□□□□ -0.08
SKA2-204ENST00000578519 ADAMTSL3P82987 1691 aa14.55□□□□□ -0.08
SKA2-204ENST00000578519 IRX6P78412 446 aaPredicted RBP14.54□□□□□ -0.08
SKA2-204ENST00000578519 AATKQ6ZMQ8 1374 aa14.54□□□□□ -0.08
SKA2-204ENST00000578519 CDC42BPGQ6DT37 1551 aa14.54□□□□□ -0.08
SKA2-204ENST00000578519 ANKRD26Q9UPS8 1709 aa14.54□□□□□ -0.08
SKA2-204ENST00000578519 SETD1BQ9UPS6 1966 aaKnown RBP14.53□□□□□ -0.08
SKA2-204ENST00000578519 TTC21AQ8NDW8 1320 aa14.53□□□□□ -0.08
SKA2-204ENST00000578519 U2SURPO15042 1029 aaKnown RBP14.53□□□□□ -0.08
SKA2-204ENST00000578519 CDCA7LQ96GN5 454 aa14.53□□□□□ -0.08
SKA2-204ENST00000578519 ANKARQ7Z5J8 1434 aa14.52□□□□□ -0.08
SKA2-204ENST00000578519 PTPRUQ92729 1446 aa14.52□□□□□ -0.08
SKA2-204ENST00000578519 FCHSD2O94868 740 aa14.52□□□□□ -0.09
SKA2-204ENST00000578519 DUSP27Q5VZP5 1158 aa14.52□□□□□ -0.09
SKA2-204ENST00000578519 TCP11L2Q8N4U5 519 aa14.52□□□□□ -0.09
SKA2-204ENST00000578519 MYH16Q9H6N6 1097 aa14.52□□□□□ -0.09
SKA2-204ENST00000578519 PNPLA6Q8IY17 1366 aa14.51□□□□□ -0.09
SKA2-204ENST00000578519 ACEP12821 1306 aa14.51□□□□□ -0.09
SKA2-204ENST00000578519 SENP3-EIF4A1A0A087X0R7 540 aa14.51□□□□□ -0.09
SKA2-204ENST00000578519 TRMT2AQ8IZ69 625 aaKnown RBP14.51□□□□□ -0.09
SKA2-204ENST00000578519 NGDNQ8NEJ9 315 aaKnown RBP14.51□□□□□ -0.09
SKA2-204ENST00000578519 KIF20BQ96Q89 1820 aa14.5□□□□□ -0.09
SKA2-204ENST00000578519 TTC21BQ7Z4L5 1316 aa14.5□□□□□ -0.09
SKA2-204ENST00000578519 ZNF142P52746 1687 aaPredicted RBP14.5□□□□□ -0.09
SKA2-204ENST00000578519 WWC1Q8IX03 1113 aa14.5□□□□□ -0.09
SKA2-204ENST00000578519 CALD1Q05682 793 aaKnown RBP14.49□□□□□ -0.09
SKA2-204ENST00000578519 CCDC136Q96JN2 1154 aa14.49□□□□□ -0.09
SKA2-204ENST00000578519 POLKQ9UBT6 870 aa14.49□□□□□ -0.09
SKA2-204ENST00000578519 PRR36Q9H6K5 1346 aa14.48□□□□□ -0.09
SKA2-204ENST00000578519 NKTRP30414 1462 aaKnown RBP14.48□□□□□ -0.09
SKA2-204ENST00000578519 PPM1GO15355 546 aaPredicted RBP14.47□□□□□ -0.09
SKA2-204ENST00000578519 CT47B1P0C2W7 299 aaPredicted RBP14.47□□□□□ -0.09
SKA2-204ENST00000578519 KCNA6P17658 529 aa14.47□□□□□ -0.09
SKA2-204ENST00000578519 NME9Q86XW9 330 aa14.47□□□□□ -0.09
SKA2-204ENST00000578519 NPHP4O75161 1426 aaPredicted RBP14.47□□□□□ -0.09
SKA2-204ENST00000578519 ITSN1Q15811 1721 aa14.46□□□□□ -0.09
SKA2-204ENST00000578519 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.46□□□□□ -0.09
SKA2-204ENST00000578519 IL16Q14005 1332 aa14.46□□□□□ -0.09
SKA2-204ENST00000578519 USP6P35125 1406 aa14.46□□□□□ -0.09
SKA2-204ENST00000578519 SHPRHQ149N8 1683 aa14.46□□□□□ -0.1
SKA2-204ENST00000578519 LMOD3Q0VAK6 560 aa14.45□□□□□ -0.1
SKA2-204ENST00000578519 NEUROD2Q15784 382 aa14.45□□□□□ -0.1
SKA2-204ENST00000578519 MON2Q7Z3U7 1717 aa14.44□□□□□ -0.1
SKA2-204ENST00000578519 XRN1Q8IZH2 1706 aaKnown RBP14.44□□□□□ -0.1
SKA2-204ENST00000578519 TMPOP42166 694 aaKnown RBP14.44□□□□□ -0.1
SKA2-204ENST00000578519 AKAP12Q02952 1782 aa14.44□□□□□ -0.1
SKA2-204ENST00000578519 COL3A1P02461 1466 aaPredicted RBP14.44□□□□□ -0.1
SKA2-204ENST00000578519 CDK12Q9NYV4 1490 aaPredicted RBP14.44□□□□□ -0.1
SKA2-204ENST00000578519 PLEKHF1Q96S99 279 aa14.43□□□□□ -0.1
SKA2-204ENST00000578519 NUTM2FA1L443 756 aa14.42□□□□□ -0.1
SKA2-204ENST00000578519 NPM3O75607 178 aaKnown RBP14.42□□□□□ -0.1
SKA2-204ENST00000578519 MS4A1P11836 297 aa14.42□□□□□ -0.1
SKA2-204ENST00000578519 IQSEC2Q5JU85 1478 aa14.42□□□□□ -0.1
SKA2-204ENST00000578519 NCKAP5LQ9HCH0 1330 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 RIPK4P57078 832 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 AAMPQ13685 434 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 B4GALNT3Q6L9W6 998 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 C14orf37Q86TY3 774 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 PMFBP1Q8TBY8 1022 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 RRP7AQ9Y3A4 280 aaKnown RBP14.41□□□□□ -0.1
SKA2-204ENST00000578519 USP31Q70CQ4 1352 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 TOPAZ1Q8N9V7 1692 aa14.41□□□□□ -0.1
SKA2-204ENST00000578519 CANXP27824 592 aaKnown RBP14.4□□□□□ -0.1
SKA2-204ENST00000578519 IL13P35225 146 aa14.4□□□□□ -0.1
SKA2-204ENST00000578519 PHF8Q9UPP1 1060 aa14.39□□□□□ -0.11
SKA2-204ENST00000578519 EMILIN1Q9Y6C2 1016 aa14.39□□□□□ -0.11
SKA2-204ENST00000578519 KIF24Q5T7B8 1368 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 PRKAR2BP31323 418 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 PDE3AQ14432 1141 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 NFE2L2Q16236 605 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 EXOC6Q8TAG9 804 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 RSPH6AQ9H0K4 717 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 OVOS2A0A0J9YW53 1432 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 OVOS2Q6IE36 1432 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 SSH2Q76I76 1423 aa14.38□□□□□ -0.11
SKA2-204ENST00000578519 CHD2O14647 1828 aaKnown RBP14.38□□□□□ -0.11
SKA2-204ENST00000578519 PROSER2Q86WR7 435 aaPredicted RBP14.37□□□□□ -0.11
SKA2-204ENST00000578519 ZNF428Q96B54 188 aa14.37□□□□□ -0.11
SKA2-204ENST00000578519 ZRANB1Q9UGI0 708 aa14.37□□□□□ -0.11
SKA2-204ENST00000578519 ADGRL3Q9HAR2 1447 aa14.37□□□□□ -0.11
SKA2-204ENST00000578519 AMPHP49418 695 aa14.36□□□□□ -0.11
SKA2-204ENST00000578519 HAP1P54257 671 aaPredicted RBP14.36□□□□□ -0.11
SKA2-204ENST00000578519 NLRP6P59044 892 aa14.36□□□□□ -0.11
SKA2-204ENST00000578519 PSME1Q06323 249 aa14.36□□□□□ -0.11
SKA2-204ENST00000578519 RRS1Q15050 365 aaKnown RBP14.36□□□□□ -0.11
SKA2-204ENST00000578519 SPINK5Q9NQ38 1064 aaPredicted RBP14.35□□□□□ -0.11
SKA2-204ENST00000578519 SBNO1A3KN83 1393 aa14.34□□□□□ -0.11
SKA2-204ENST00000578519 NCOA3Q9Y6Q9 1424 aa14.34□□□□□ -0.11
SKA2-204ENST00000578519 PLIN1O60240 522 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms