RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TTC21AQ8NDW8 1320 aa18.46■□□□□ 0.55
CCDC40-209ENST00000573474 XIRP1Q702N8 1843 aaKnown RBP18.45■□□□□ 0.54
CCDC40-209ENST00000573474 NME9Q86XW9 330 aa18.45■□□□□ 0.54
CCDC40-209ENST00000573474 ORAI2Q96SN7 254 aa18.45■□□□□ 0.54
CCDC40-209ENST00000573474 MST1RQ04912 1400 aa18.45■□□□□ 0.54
CCDC40-209ENST00000573474 KIF20BQ96Q89 1820 aa18.44■□□□□ 0.54
CCDC40-209ENST00000573474 TNNT2P45379 298 aaPredicted RBP18.43■□□□□ 0.54
CCDC40-209ENST00000573474 COG3Q96JB2 828 aa18.43■□□□□ 0.54
CCDC40-209ENST00000573474 YTHDC1Q96MU7 727 aaKnown RBP18.43■□□□□ 0.54
CCDC40-209ENST00000573474 NRKQ7Z2Y5 1582 aa18.42■□□□□ 0.54
CCDC40-209ENST00000573474 PSME1Q06323 249 aa18.42■□□□□ 0.54
CCDC40-209ENST00000573474 PNISRQ8TF01 805 aaKnown RBP18.42■□□□□ 0.54
CCDC40-209ENST00000573474 ANKRD26Q9UPS8 1709 aa18.42■□□□□ 0.54
CCDC40-209ENST00000573474 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
CCDC40-209ENST00000573474 FAM9BQ8IZU0 186 aa18.41■□□□□ 0.54
CCDC40-209ENST00000573474 ZRANB1Q9UGI0 708 aa18.4■□□□□ 0.54
CCDC40-209ENST00000573474 KIF1AQ12756 1690 aa18.39■□□□□ 0.53
CCDC40-209ENST00000573474 FOXO3O43524 673 aa18.39■□□□□ 0.53
CCDC40-209ENST00000573474 SLAIN2Q9P270 581 aa18.38■□□□□ 0.53
CCDC40-209ENST00000573474 USP31Q70CQ4 1352 aa18.38■□□□□ 0.53
CCDC40-209ENST00000573474 LTBP4Q8N2S1 1624 aa18.38■□□□□ 0.53
CCDC40-209ENST00000573474 PAK3O75914 559 aaPredicted RBP18.37■□□□□ 0.53
CCDC40-209ENST00000573474 MTHFSP49914 203 aa18.37■□□□□ 0.53
CCDC40-209ENST00000573474 OVOS2A0A0J9YW53 1432 aa18.36■□□□□ 0.53
CCDC40-209ENST00000573474 OVOS2Q6IE36 1432 aa18.36■□□□□ 0.53
CCDC40-209ENST00000573474 KRT28Q7Z3Y7 464 aa18.36■□□□□ 0.53
CCDC40-209ENST00000573474 CFAP53Q96M91 514 aa18.36■□□□□ 0.53
CCDC40-209ENST00000573474 AATKQ6ZMQ8 1374 aa18.35■□□□□ 0.53
CCDC40-209ENST00000573474 NLRP6P59044 892 aa18.34■□□□□ 0.53
CCDC40-209ENST00000573474 ABTB2Q8N961 1025 aa18.34■□□□□ 0.53
CCDC40-209ENST00000573474 NPHP3Q7Z494 1330 aa18.33■□□□□ 0.53
CCDC40-209ENST00000573474 BRINP3Q76B58 766 aa18.33■□□□□ 0.52
CCDC40-209ENST00000573474 WDR43Q15061 677 aaKnown RBP eCLIP18.32■□□□□ 0.52
CCDC40-209ENST00000573474 POLKQ9UBT6 870 aa18.32■□□□□ 0.52
CCDC40-209ENST00000573474 PIK3C2AO00443 1686 aa18.31■□□□□ 0.52
CCDC40-209ENST00000573474 XPCQ01831 940 aaPredicted RBP18.31■□□□□ 0.52
CCDC40-209ENST00000573474 INSRP06213 1382 aa18.3■□□□□ 0.52
CCDC40-209ENST00000573474 FBLN1P23142 703 aa18.3■□□□□ 0.52
CCDC40-209ENST00000573474 SBNO1A3KN83 1393 aa18.3■□□□□ 0.52
CCDC40-209ENST00000573474 NUTM2GQ5VZR2 741 aa18.29■□□□□ 0.52
CCDC40-209ENST00000573474 PNPLA6Q8IY17 1366 aa18.29■□□□□ 0.52
CCDC40-209ENST00000573474 USP54Q70EL1 1684 aa18.28■□□□□ 0.52
CCDC40-209ENST00000573474 SMG6Q86US8 1419 aaKnown RBP18.28■□□□□ 0.52
CCDC40-209ENST00000573474 TRPM3Q9HCF6 1732 aaPredicted RBP18.27■□□□□ 0.52
CCDC40-209ENST00000573474 CENPBP07199 599 aaPredicted RBP18.27■□□□□ 0.52
CCDC40-209ENST00000573474 HNRNPUQ00839 825 aaKnown RBP eCLIP18.27■□□□□ 0.52
CCDC40-209ENST00000573474 DDX17Q92841 729 aaKnown RBP18.27■□□□□ 0.52
CCDC40-209ENST00000573474 ADAMTS8Q9UP79 889 aa18.27■□□□□ 0.52
CCDC40-209ENST00000573474 EMILIN1Q9Y6C2 1016 aa18.27■□□□□ 0.52
CCDC40-209ENST00000573474 PPM1GO15355 546 aaPredicted RBP18.26■□□□□ 0.51
CCDC40-209ENST00000573474 RRS1Q15050 365 aaKnown RBP18.26■□□□□ 0.51
CCDC40-209ENST00000573474 NUDCQ9Y266 331 aa18.26■□□□□ 0.51
CCDC40-209ENST00000573474 LMOD2Q6P5Q4 547 aa18.25■□□□□ 0.51
CCDC40-209ENST00000573474 PXDNQ92626 1479 aa18.25■□□□□ 0.51
CCDC40-209ENST00000573474 MAP2P11137 1827 aaKnown RBP18.24■□□□□ 0.51
CCDC40-209ENST00000573474 SOX12O15370 315 aa18.24■□□□□ 0.51
CCDC40-209ENST00000573474 DIAPH1O60610 1272 aaKnown RBP18.24■□□□□ 0.51
CCDC40-209ENST00000573474 KCNH5Q8NCM2 988 aa18.24■□□□□ 0.51
CCDC40-209ENST00000573474 COL3A1P02461 1466 aaPredicted RBP18.24■□□□□ 0.51
CCDC40-209ENST00000573474 CDK12Q9NYV4 1490 aaPredicted RBP18.23■□□□□ 0.51
CCDC40-209ENST00000573474 SOS2Q07890 1332 aaPredicted RBP18.23■□□□□ 0.51
CCDC40-209ENST00000573474 SPATA31A3Q5VYP0 1347 aa18.23■□□□□ 0.51
CCDC40-209ENST00000573474 MARF1Q9Y4F3 1742 aaKnown RBP18.22■□□□□ 0.51
CCDC40-209ENST00000573474 BLMP54132 1417 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-209ENST00000573474 TNS3Q68CZ2 1445 aa18.22■□□□□ 0.51
CCDC40-209ENST00000573474 USP19O94966 1318 aa18.22■□□□□ 0.51
CCDC40-209ENST00000573474 MAP3K19Q56UN5 1328 aa18.22■□□□□ 0.51
CCDC40-209ENST00000573474 ARHGEF10O15013 1369 aa18.21■□□□□ 0.51
CCDC40-209ENST00000573474 ALS2Q96Q42 1657 aa18.21■□□□□ 0.51
CCDC40-209ENST00000573474 KIF24Q5T7B8 1368 aa18.2■□□□□ 0.5
CCDC40-209ENST00000573474 SHPRHQ149N8 1683 aa18.2■□□□□ 0.5
CCDC40-209ENST00000573474 TOM1O60784 492 aa18.2■□□□□ 0.5
CCDC40-209ENST00000573474 SLIT3O75094 1523 aa18.19■□□□□ 0.5
CCDC40-209ENST00000573474 GCP02774 474 aa18.19■□□□□ 0.5
CCDC40-209ENST00000573474 U2AF1L5P0DN76 240 aaPredicted RBP18.19■□□□□ 0.5
CCDC40-209ENST00000573474 IL13P35225 146 aa18.19■□□□□ 0.5
CCDC40-209ENST00000573474 AMPHP49418 695 aa18.19■□□□□ 0.5
CCDC40-209ENST00000573474 U2AF1Q01081 240 aaKnown RBP eCLIP18.19■□□□□ 0.5
CCDC40-209ENST00000573474 FLT4P35916 1363 aa18.18■□□□□ 0.5
CCDC40-209ENST00000573474 U2SURPO15042 1029 aaKnown RBP18.18■□□□□ 0.5
CCDC40-209ENST00000573474 ZBED9Q6R2W3 1325 aa18.18■□□□□ 0.5
CCDC40-209ENST00000573474 NFAT5O94916 1531 aa18.18■□□□□ 0.5
CCDC40-209ENST00000573474 NHSL1Q5SYE7 1610 aa18.17■□□□□ 0.5
CCDC40-209ENST00000573474 IQSEC2Q5JU85 1478 aa18.17■□□□□ 0.5
CCDC40-209ENST00000573474 RTL1A6NKG5 1358 aa18.16■□□□□ 0.5
CCDC40-209ENST00000573474 PEAK1Q9H792 1746 aa18.15■□□□□ 0.5
CCDC40-209ENST00000573474 HOXC9P31274 260 aa18.15■□□□□ 0.5
CCDC40-209ENST00000573474 HSP90AB2PQ58FF8 381 aa18.15■□□□□ 0.5
CCDC40-209ENST00000573474 RUNDC1Q96C34 613 aa18.15■□□□□ 0.5
CCDC40-209ENST00000573474 PNNQ9H307 717 aaKnown RBP18.15■□□□□ 0.5
CCDC40-209ENST00000573474 ROBO1Q9Y6N7 1651 aa18.15■□□□□ 0.5
CCDC40-209ENST00000573474 EIF4A2Q14240 407 aaKnown RBP18.14■□□□□ 0.49
CCDC40-209ENST00000573474 ARHGEF25Q86VW2 580 aa18.14■□□□□ 0.49
CCDC40-209ENST00000573474 CCDC146Q8IYE0 955 aa18.14■□□□□ 0.49
CCDC40-209ENST00000573474 IP6K1Q92551 441 aa18.14■□□□□ 0.49
CCDC40-209ENST00000573474 MED1Q15648 1581 aaPredicted RBP18.13■□□□□ 0.49
CCDC40-209ENST00000573474 PLEKHG5O94827 1062 aa18.13■□□□□ 0.49
CCDC40-209ENST00000573474 FCHSD2O94868 740 aa18.13■□□□□ 0.49
CCDC40-209ENST00000573474 CERKQ8TCT0 537 aa18.13■□□□□ 0.49
CCDC40-209ENST00000573474 AHDC1Q5TGY3 1603 aaPredicted RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms