RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	ATG7	O95352	703 aa		10.94	□□□□□ -0.66
CNOT1-222	ENST00000570139	CCDC27	Q2M243	656 aa		10.94	□□□□□ -0.66
CNOT1-222	ENST00000570139	B4GALNT3	Q6L9W6	998 aa		10.94	□□□□□ -0.66
CNOT1-222	ENST00000570139	KCNH8	Q96L42	1107 aa		10.94	□□□□□ -0.66
CNOT1-222	ENST00000570139	RAPGEF2	Q9Y4G8	1499 aa		10.93	□□□□□ -0.66
CNOT1-222	ENST00000570139	IGF1R	P08069	1367 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	EIF4G3	O43432	1585 aa	Known RBP	10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	SEMA3F	Q13275	785 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	LRRN4	Q8WUT4	740 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	HS3ST6	Q96QI5	342 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	VRTN	Q9H8Y1	702 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	TFIP11	Q9UBB9	837 aa	Known RBP	10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	AMOTL2	Q9Y2J4	779 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139	IVNS1ABP	Q9Y6Y0	642 aa		10.92	□□□□□ -0.66
CNOT1-222	ENST00000570139		E9PSI1	815 aa		10.91	□□□□□ -0.66
CNOT1-222	ENST00000570139	SMAP	O00193	183 aa		10.91	□□□□□ -0.66
CNOT1-222	ENST00000570139	SND1	Q7KZF4	910 aa	Known RBP eCLIP	10.91	□□□□□ -0.66
CNOT1-222	ENST00000570139	GRIN2B	Q13224	1484 aa		10.91	□□□□□ -0.66
CNOT1-222	ENST00000570139	LOC105371045	A0A1W2PR82	267 aa		10.9	□□□□□ -0.66
CNOT1-222	ENST00000570139	C6orf229	H3BNL8	230 aa		10.9	□□□□□ -0.66
CNOT1-222	ENST00000570139	GUCA2A	Q02747	115 aa		10.9	□□□□□ -0.66
CNOT1-222	ENST00000570139	UCN2	Q96RP3	112 aa		10.9	□□□□□ -0.66
CNOT1-222	ENST00000570139	CARMIL1	Q5VZK9	1371 aa		10.9	□□□□□ -0.67
CNOT1-222	ENST00000570139	POTEB3	A0JP26	581 aa		10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	CFAP99	D6REC4	459 aa		10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	HDGF	P51858	240 aa	Known RBP	10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	POTEB	Q6S5H4	581 aa		10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	SLF2	Q8IX21	1173 aa		10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	ADAMTS12	P58397	1594 aa		10.89	□□□□□ -0.67
CNOT1-222	ENST00000570139	PRR7	Q8TB68	274 aa		10.88	□□□□□ -0.67
CNOT1-222	ENST00000570139	CTTNBP2	Q8WZ74	1663 aa		10.88	□□□□□ -0.67
CNOT1-222	ENST00000570139	FAM205C	A6NFA0	338 aa		10.87	□□□□□ -0.67
CNOT1-222	ENST00000570139	TMEM88B	A6NKF7	163 aa		10.87	□□□□□ -0.67
CNOT1-222	ENST00000570139	SLC10A3	P09131	477 aa		10.87	□□□□□ -0.67
CNOT1-222	ENST00000570139	PROX2	Q3B8N5	592 aa		10.87	□□□□□ -0.67
CNOT1-222	ENST00000570139	TDRD9	Q8NDG6	1382 aa	Known RBP	10.87	□□□□□ -0.67
CNOT1-222	ENST00000570139	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.87	□□□□□ -0.67
CNOT1-222	ENST00000570139	FHAD1	B1AJZ9	1412 aa		10.86	□□□□□ -0.67
CNOT1-222	ENST00000570139	CEP162	Q5TB80	1403 aa		10.86	□□□□□ -0.67
CNOT1-222	ENST00000570139	SWT1	Q5T5J6	900 aa	Known RBP	10.86	□□□□□ -0.67
CNOT1-222	ENST00000570139	HLA-C	Q95604	372 aa		10.86	□□□□□ -0.67
CNOT1-222	ENST00000570139	ZNF428	Q96B54	188 aa		10.86	□□□□□ -0.67
CNOT1-222	ENST00000570139	ATP9B	O43861	1147 aa		10.85	□□□□□ -0.67
CNOT1-222	ENST00000570139	KIAA1468	Q9P260	1216 aa		10.85	□□□□□ -0.67
CNOT1-222	ENST00000570139	EPS8L1	Q8TE68	723 aa		10.84	□□□□□ -0.67
CNOT1-222	ENST00000570139	KCNK17	Q96T54	332 aa		10.84	□□□□□ -0.67
CNOT1-222	ENST00000570139	GNE	Q9Y223	722 aa	Known RBP	10.84	□□□□□ -0.67
CNOT1-222	ENST00000570139	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.84	□□□□□ -0.67
CNOT1-222	ENST00000570139	CARNS1	A5YM72	827 aa		10.83	□□□□□ -0.68
CNOT1-222	ENST00000570139	NR6A1	Q15406	480 aa		10.83	□□□□□ -0.68
CNOT1-222	ENST00000570139	AQR	O60306	1485 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
CNOT1-222	ENST00000570139	FUT2	Q10981	343 aa		10.82	□□□□□ -0.68
CNOT1-222	ENST00000570139	ELOA	Q14241	798 aa	Known RBP	10.82	□□□□□ -0.68
CNOT1-222	ENST00000570139	MYT1L	Q9UL68	1186 aa		10.82	□□□□□ -0.68
CNOT1-222	ENST00000570139	ATP6V1A	P38606	617 aa		10.81	□□□□□ -0.68
CNOT1-222	ENST00000570139	CDCA8	Q53HL2	280 aa		10.81	□□□□□ -0.68
CNOT1-222	ENST00000570139	TBC1D9	Q6ZT07	1266 aa		10.81	□□□□□ -0.68
CNOT1-222	ENST00000570139	EFCAB5	A4FU69	1503 aa		10.8	□□□□□ -0.68
CNOT1-222	ENST00000570139	RNF166	Q96A37	237 aa	Predicted RBP	10.8	□□□□□ -0.68
CNOT1-222	ENST00000570139	RABGEF1	Q9UJ41	708 aa		10.8	□□□□□ -0.68
CNOT1-222	ENST00000570139	CLIP1	P30622	1438 aa		10.8	□□□□□ -0.68
CNOT1-222	ENST00000570139	SNAPC4	Q5SXM2	1469 aa		10.8	□□□□□ -0.68
CNOT1-222	ENST00000570139	CFH	P08603	1231 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	NR1H3	Q13133	447 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	DESI1	Q6ICB0	168 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	RETREG3	Q86VR2	466 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	NFATC2IP	Q8NCF5	419 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	ZBED2	Q9BTP6	218 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	SYNJ2	O15056	1496 aa		10.79	□□□□□ -0.68
CNOT1-222	ENST00000570139	CCER1	Q8TC90	406 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT1-222	ENST00000570139	GRIN2A	Q12879	1464 aa		10.76	□□□□□ -0.69
CNOT1-222	ENST00000570139	FAM98C	Q17RN3	349 aa	Known RBP	10.76	□□□□□ -0.69
CNOT1-222	ENST00000570139		Q3C1V9	767 aa		10.76	□□□□□ -0.69
CNOT1-222	ENST00000570139	KMT5B	Q4FZB7	885 aa		10.76	□□□□□ -0.69
CNOT1-222	ENST00000570139	IQGAP2	Q13576	1575 aa		10.75	□□□□□ -0.69
CNOT1-222	ENST00000570139	PER1	O15534	1290 aa	Predicted RBP	10.75	□□□□□ -0.69
CNOT1-222	ENST00000570139	KANK4	Q5T7N3	995 aa	Predicted RBP	10.75	□□□□□ -0.69
CNOT1-222	ENST00000570139	HOXB1	P14653	301 aa	Predicted RBP	10.74	□□□□□ -0.69
CNOT1-222	ENST00000570139	ZNF592	Q92610	1267 aa		10.74	□□□□□ -0.69
CNOT1-222	ENST00000570139	ZBBX	A8MT70	800 aa		10.73	□□□□□ -0.69
CNOT1-222	ENST00000570139	SYMPK	Q92797	1274 aa	Known RBP	10.73	□□□□□ -0.69
CNOT1-222	ENST00000570139	SLC4A5	Q9BY07	1137 aa		10.73	□□□□□ -0.69
CNOT1-222	ENST00000570139	SEPT9	Q9UHD8	586 aa	Predicted RBP	10.73	□□□□□ -0.69
CNOT1-222	ENST00000570139	VPS8	Q8N3P4	1428 aa		10.73	□□□□□ -0.69
CNOT1-222	ENST00000570139	SAMD9	Q5K651	1589 aa		10.73	□□□□□ -0.69
CNOT1-222	ENST00000570139	USP17L3	A6NCW0	530 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	USP17L4	A6NCW7	530 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	TMEM164	Q5U3C3	297 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	USP17L2	Q6R6M4	530 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	LYPD8	Q6UX82	237 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	USP17L1	Q7RTZ2	530 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	PLEKHM2	Q8IWE5	1019 aa		10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	NOVA2	Q9UNW9	492 aa	Known RBP	10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.72	□□□□□ -0.69
CNOT1-222	ENST00000570139	FBXO45	P0C2W1	286 aa		10.71	□□□□□ -0.69
CNOT1-222	ENST00000570139	ERCC3	P19447	782 aa		10.71	□□□□□ -0.69
CNOT1-222	ENST00000570139	KIAA0586	Q9BVV6	1533 aa		10.71	□□□□□ -0.69
CNOT1-222	ENST00000570139	ZMIZ1	Q9ULJ6	1067 aa		10.71	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms