RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 POLR3AO14802 1390 aaPredicted RBP9.57□□□□□ -0.88
HERPUD1-209ENST00000564678 FAM117AQ9C073 453 aa9.57□□□□□ -0.88
HERPUD1-209ENST00000564678 PLEKHG5O94827 1062 aa9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 MYO5BQ9ULV0 1848 aa9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 USP32Q8NFA0 1604 aa9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 RRP1P56182 461 aaKnown RBP9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 FBXO31Q5XUX0 539 aaPredicted RBP9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 SLC12A5Q9H2X9 1139 aa9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 RYDENQ9NUL5 291 aaKnown RBP9.56□□□□□ -0.88
HERPUD1-209ENST00000564678 SPATA31D1Q6ZQQ2 1576 aa9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 NSD2O96028 1365 aa9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 ANKRD36BQ8N2N9 1353 aa9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 CGNL1Q0VF96 1302 aa9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 MFAP1P55081 439 aaKnown RBP9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 ZBTB47Q9UFB7 747 aaPredicted RBP9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 SALL2Q9Y467 1007 aaPredicted RBP9.55□□□□□ -0.88
HERPUD1-209ENST00000564678 TMCO4Q5TGY1 634 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 NUTM2DQ5VT03 806 aaPredicted RBP9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 ZNF692Q9BU19 519 aaPredicted RBP9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 KIF13AQ9H1H9 1805 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 NSD3Q9BZ95 1437 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 ZNF521Q96K83 1311 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 TRAK2O60296 914 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 GSE1Q14687 1217 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 B4GALNT3Q6L9W6 998 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 MORC1Q86VD1 984 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 CDCA7LQ96GN5 454 aa9.54□□□□□ -0.88
HERPUD1-209ENST00000564678 ARHGEF40Q8TER5 1519 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 TULP4Q9NRJ4 1543 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 RBM19Q9Y4C8 960 aaKnown RBP9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 YTHDC2Q9H6S0 1430 aaKnown RBP9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 ATAD2Q6PL18 1390 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 CLTCQ00610 1675 aaKnown RBP9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 SENP3-EIF4A1A0A087X0R7 540 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 ONECUT3O60422 494 aaPredicted RBP9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 GOLGA2Q08379 1002 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 CCDC136Q96JN2 1154 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 GZF1Q9H116 711 aaPredicted RBP9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 ALKQ9UM73 1620 aa9.53□□□□□ -0.88
HERPUD1-209ENST00000564678 A2ML1A8K2U0 1454 aa9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 HDGFP51858 240 aaKnown RBP9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 PDE4DQ08499 809 aa9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 CHMP4AQ9BY43 222 aa9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 SPINK5Q9NQ38 1064 aaPredicted RBP9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 PTPRMP28827 1452 aa9.52□□□□□ -0.89
HERPUD1-209ENST00000564678 HSP90B1P14625 803 aaKnown RBP9.51□□□□□ -0.89
HERPUD1-209ENST00000564678 ESF1Q9H501 851 aaKnown RBP9.51□□□□□ -0.89
HERPUD1-209ENST00000564678 DUSP27Q5VZP5 1158 aa9.51□□□□□ -0.89
HERPUD1-209ENST00000564678 POGKQ9P215 609 aa9.51□□□□□ -0.89
HERPUD1-209ENST00000564678 PLEKHH1Q9ULM0 1364 aa9.51□□□□□ -0.89
HERPUD1-209ENST00000564678 DLC1Q96QB1 1528 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 NUBP1P53384 320 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 TRMT2AQ8IZ69 625 aaKnown RBP9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 ZMYM3Q14202 1370 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 RIMS2Q9UQ26 1411 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 PLEKHG3A1L390 1219 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 TRIM66O15016 1216 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 SLFN5Q08AF3 891 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 E2F4Q16254 413 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 CFAP53Q96M91 514 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 PRAM1Q96QH2 718 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 CABP2Q9NPB3 220 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 TERF2IPQ9NYB0 399 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 STK26Q9P289 416 aa9.5□□□□□ -0.89
HERPUD1-209ENST00000564678 ABCC11Q96J66 1382 aa9.49□□□□□ -0.89
HERPUD1-209ENST00000564678 SRPK2P78362 688 aaKnown RBP9.49□□□□□ -0.89
HERPUD1-209ENST00000564678 APAF1O14727 1248 aa9.48□□□□□ -0.89
HERPUD1-209ENST00000564678 DCAF8Q5TAQ9 597 aa9.48□□□□□ -0.89
HERPUD1-209ENST00000564678 SIRT1Q96EB6 747 aa9.48□□□□□ -0.89
HERPUD1-209ENST00000564678 MED14O60244 1454 aa9.48□□□□□ -0.89
HERPUD1-209ENST00000564678 E9PSI1 815 aa9.48□□□□□ -0.89
HERPUD1-209ENST00000564678 MLECQ14165 292 aa9.48□□□□□ -0.89
HERPUD1-209ENST00000564678 FLIIQ13045 1269 aa9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 KRI1Q8N9T8 703 aaKnown RBP9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 A0A1W2PP64 1363 aa9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 MTHFSP49914 203 aa9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 IRF5Q13568 498 aa9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 SAFB2Q14151 953 aaKnown RBP eCLIP9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 RBM26Q5T8P6 1007 aaKnown RBP9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 HDGFL2Q7Z4V5 671 aaPredicted RBP9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 RETREG2Q8NC44 543 aa9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 RUNDC1Q96C34 613 aa9.47□□□□□ -0.89
HERPUD1-209ENST00000564678 CCDC146Q8IYE0 955 aa9.46□□□□□ -0.89
HERPUD1-209ENST00000564678 EXOC6Q8TAG9 804 aa9.46□□□□□ -0.89
HERPUD1-209ENST00000564678 CDK19Q9BWU1 502 aa9.46□□□□□ -0.89
HERPUD1-209ENST00000564678 MINK1Q8N4C8 1332 aaPredicted RBP9.46□□□□□ -0.9
HERPUD1-209ENST00000564678 SETD1AO15047 1707 aaKnown RBP9.45□□□□□ -0.9
HERPUD1-209ENST00000564678 FANCIQ9NVI1 1328 aa9.45□□□□□ -0.9
HERPUD1-209ENST00000564678 SHPRHQ149N8 1683 aa9.45□□□□□ -0.9
HERPUD1-209ENST00000564678 NKTRP30414 1462 aaKnown RBP9.45□□□□□ -0.9
HERPUD1-209ENST00000564678 CCDC27Q2M243 656 aa9.45□□□□□ -0.9
HERPUD1-209ENST00000564678 TNRQ92752 1358 aa9.45□□□□□ -0.9
HERPUD1-209ENST00000564678 A6NJR5 290 aa9.44□□□□□ -0.9
HERPUD1-209ENST00000564678 WWC1Q8IX03 1113 aa9.44□□□□□ -0.9
HERPUD1-209ENST00000564678 SSUH2Q9Y2M2 353 aa9.44□□□□□ -0.9
HERPUD1-209ENST00000564678 FYB1O15117 783 aa9.44□□□□□ -0.9
HERPUD1-209ENST00000564678 TNNT2P45379 298 aaPredicted RBP9.44□□□□□ -0.9
HERPUD1-209ENST00000564678 WDR63Q8IWG1 891 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms