RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 NGDNQ8NEJ9 315 aaKnown RBP24.57■■□□□ 1.52
HDGFL3-203ENST00000563404 CRYBG1Q9Y4K1 1723 aa24.57■■□□□ 1.52
HDGFL3-203ENST00000563404 KRT27Q7Z3Y8 459 aa24.56■■□□□ 1.52
HDGFL3-203ENST00000563404 COL14A1Q05707 1796 aaKnown RBP24.55■■□□□ 1.52
HDGFL3-203ENST00000563404 NUDT16Q96DE0 195 aaKnown RBP24.55■■□□□ 1.52
HDGFL3-203ENST00000563404 PAK3O75914 559 aaPredicted RBP24.54■■□□□ 1.52
HDGFL3-203ENST00000563404 FAM98CQ17RN3 349 aaKnown RBP24.53■■□□□ 1.52
HDGFL3-203ENST00000563404 CDK19Q9BWU1 502 aa24.51■■□□□ 1.51
HDGFL3-203ENST00000563404 ITSN1Q15811 1721 aa24.5■■□□□ 1.51
HDGFL3-203ENST00000563404 SPATA31A5Q5VU36 1347 aa24.49■■□□□ 1.51
HDGFL3-203ENST00000563404 SPATA31A7Q8IWB4 1347 aa24.49■■□□□ 1.51
HDGFL3-203ENST00000563404 A0A0G2JS52 829 aa24.48■■□□□ 1.51
HDGFL3-203ENST00000563404 MYT1Q01538 1121 aa24.48■■□□□ 1.51
HDGFL3-203ENST00000563404 SF3B2Q13435 895 aaKnown RBP24.48■■□□□ 1.51
HDGFL3-203ENST00000563404 NBPF1Q3BBV0 1214 aa24.48■■□□□ 1.51
HDGFL3-203ENST00000563404 TOPAZ1Q8N9V7 1692 aa24.47■■□□□ 1.51
HDGFL3-203ENST00000563404 PRDM11Q9NQV5 511 aa24.47■■□□□ 1.51
HDGFL3-203ENST00000563404 KIAA1210Q9ULL0 1709 aa24.47■■□□□ 1.51
HDGFL3-203ENST00000563404 POLR3AO14802 1390 aaPredicted RBP24.46■■□□□ 1.51
HDGFL3-203ENST00000563404 KIAA0232Q92628 1395 aa24.46■■□□□ 1.51
HDGFL3-203ENST00000563404 PHRF1Q9P1Y6 1649 aaKnown RBP24.45■■□□□ 1.5
HDGFL3-203ENST00000563404 ACEP12821 1306 aa24.44■■□□□ 1.5
HDGFL3-203ENST00000563404 CHRNA2Q15822 529 aa24.44■■□□□ 1.5
HDGFL3-203ENST00000563404 NBPF8Q3BBV2 869 aa24.44■■□□□ 1.5
HDGFL3-203ENST00000563404 FAM182BQ5T319 152 aa24.44■■□□□ 1.5
HDGFL3-203ENST00000563404 NUTM2GQ5VZR2 741 aa24.44■■□□□ 1.5
HDGFL3-203ENST00000563404 THSD7AQ9UPZ6 1657 aa24.43■■□□□ 1.5
HDGFL3-203ENST00000563404 PLEKHG3A1L390 1219 aa24.43■■□□□ 1.5
HDGFL3-203ENST00000563404 CCDC61Q9Y6R9 512 aa24.43■■□□□ 1.5
HDGFL3-203ENST00000563404 ZC3H6P61129 1189 aaKnown RBP24.41■■□□□ 1.5
HDGFL3-203ENST00000563404 SPATA31A1Q5TZJ5 1347 aa24.39■■□□□ 1.5
HDGFL3-203ENST00000563404 STRN4Q9NRL3 753 aa24.38■■□□□ 1.49
HDGFL3-203ENST00000563404 BAG6P46379 1132 aa24.37■■□□□ 1.49
HDGFL3-203ENST00000563404 NRKQ7Z2Y5 1582 aa24.36■■□□□ 1.49
HDGFL3-203ENST00000563404 CENPJQ9HC77 1338 aaPredicted RBP24.35■■□□□ 1.49
HDGFL3-203ENST00000563404 EN1Q05925 392 aaPredicted RBP24.34■■□□□ 1.49
HDGFL3-203ENST00000563404 ABTB2Q8N961 1025 aa24.34■■□□□ 1.49
HDGFL3-203ENST00000563404 CABP2Q9NPB3 220 aa24.34■■□□□ 1.49
HDGFL3-203ENST00000563404 RGPD1P0DJD0 1748 aa24.34■■□□□ 1.49
HDGFL3-203ENST00000563404 PPIP5K1Q6PFW1 1433 aa24.34■■□□□ 1.49
HDGFL3-203ENST00000563404 USP19O94966 1318 aa24.34■■□□□ 1.49
HDGFL3-203ENST00000563404 PSDA5PKW4 1024 aaPredicted RBP24.33■■□□□ 1.49
HDGFL3-203ENST00000563404 SRPK2P78362 688 aaKnown RBP24.33■■□□□ 1.49
HDGFL3-203ENST00000563404 CAMTA1Q9Y6Y1 1673 aa24.33■■□□□ 1.49
HDGFL3-203ENST00000563404 SSH2Q76I76 1423 aa24.32■■□□□ 1.48
HDGFL3-203ENST00000563404 TNS1Q9HBL0 1735 aaKnown RBP24.32■■□□□ 1.48
HDGFL3-203ENST00000563404 USP35Q9P2H5 1018 aa24.31■■□□□ 1.48
HDGFL3-203ENST00000563404 LMO7Q8WWI1 1683 aa24.3■■□□□ 1.48
HDGFL3-203ENST00000563404 CPDO75976 1380 aa24.3■■□□□ 1.48
HDGFL3-203ENST00000563404 DISP2A7MBM2 1401 aa24.3■■□□□ 1.48
HDGFL3-203ENST00000563404 L3MBTL2Q969R5 705 aa24.3■■□□□ 1.48
HDGFL3-203ENST00000563404 LARP1Q6PKG0 1096 aaKnown RBP24.29■■□□□ 1.48
HDGFL3-203ENST00000563404 QRICH2Q9H0J4 1663 aa24.29■■□□□ 1.48
HDGFL3-203ENST00000563404 LRP5O75197 1615 aa24.28■■□□□ 1.48
HDGFL3-203ENST00000563404 EVA1CP58658 441 aa24.28■■□□□ 1.48
HDGFL3-203ENST00000563404 GCP02774 474 aa24.27■■□□□ 1.48
HDGFL3-203ENST00000563404 BARGINQ6ZT62 677 aa24.27■■□□□ 1.48
HDGFL3-203ENST00000563404 EZH2Q15910 746 aaKnown RBP24.26■■□□□ 1.47
HDGFL3-203ENST00000563404 NLRP13Q86W25 1043 aa24.26■■□□□ 1.47
HDGFL3-203ENST00000563404 CABP1Q9NZU7 370 aa24.26■■□□□ 1.47
HDGFL3-203ENST00000563404 TRIM37O94972 964 aa24.25■■□□□ 1.47
HDGFL3-203ENST00000563404 FAM196AQ6ZSG2 479 aa24.25■■□□□ 1.47
HDGFL3-203ENST00000563404 SIN3AQ96ST3 1273 aa24.25■■□□□ 1.47
HDGFL3-203ENST00000563404 CAMKK2Q96RR4 588 aa24.24■■□□□ 1.47
HDGFL3-203ENST00000563404 USP6P35125 1406 aa24.24■■□□□ 1.47
HDGFL3-203ENST00000563404 COL5A2P05997 1499 aaPredicted RBP24.22■■□□□ 1.47
HDGFL3-203ENST00000563404 BRD4O60885 1362 aaPredicted RBP24.22■■□□□ 1.47
HDGFL3-203ENST00000563404 TCP11L2Q8N4U5 519 aa24.22■■□□□ 1.47
HDGFL3-203ENST00000563404 TRPM1Q7Z4N2 1603 aa24.21■■□□□ 1.47
HDGFL3-203ENST00000563404 R3HDM1Q15032 1099 aaKnown RBP24.21■■□□□ 1.47
HDGFL3-203ENST00000563404 SLIT3O75094 1523 aa24.2■■□□□ 1.46
HDGFL3-203ENST00000563404 NLRP6P59044 892 aa24.19■■□□□ 1.46
HDGFL3-203ENST00000563404 PDE3BQ13370 1112 aa24.19■■□□□ 1.46
HDGFL3-203ENST00000563404 APBA3O96018 575 aa24.18■■□□□ 1.46
HDGFL3-203ENST00000563404 THRAP3Q9Y2W1 955 aaKnown RBP24.17■■□□□ 1.46
HDGFL3-203ENST00000563404 PIK3C2AO00443 1686 aa24.17■■□□□ 1.46
HDGFL3-203ENST00000563404 EVC2Q86UK5 1308 aa24.16■■□□□ 1.46
HDGFL3-203ENST00000563404 ZBTB7CA1YPR0 619 aa24.16■■□□□ 1.46
HDGFL3-203ENST00000563404 NEUROD1Q13562 356 aa24.15■■□□□ 1.46
HDGFL3-203ENST00000563404 CRB1P82279 1406 aa24.15■■□□□ 1.46
HDGFL3-203ENST00000563404 AATKQ6ZMQ8 1374 aa24.15■■□□□ 1.46
HDGFL3-203ENST00000563404 PARP4Q9UKK3 1724 aaKnown RBP24.14■■□□□ 1.45
HDGFL3-203ENST00000563404 ROCK2O75116 1388 aaKnown RBP24.14■■□□□ 1.45
HDGFL3-203ENST00000563404 COL18A1P39060 1754 aa24.14■■□□□ 1.45
HDGFL3-203ENST00000563404 PARD3Q8TEW0 1356 aa24.13■■□□□ 1.45
HDGFL3-203ENST00000563404 RREB1Q92766 1687 aa24.12■■□□□ 1.45
HDGFL3-203ENST00000563404 AXIN2Q9Y2T1 843 aa24.12■■□□□ 1.45
HDGFL3-203ENST00000563404 TTC21BQ7Z4L5 1316 aa24.1■■□□□ 1.45
HDGFL3-203ENST00000563404 NUP188Q5SRE5 1749 aa24.1■■□□□ 1.45
HDGFL3-203ENST00000563404 PEAK1Q9H792 1746 aa24.09■■□□□ 1.45
HDGFL3-203ENST00000563404 AKAP12Q02952 1782 aa24.08■■□□□ 1.45
HDGFL3-203ENST00000563404 LRRC37A3O60309 1634 aa24.07■■□□□ 1.44
HDGFL3-203ENST00000563404 ARHGEF25Q86VW2 580 aa24.07■■□□□ 1.44
HDGFL3-203ENST00000563404 ZNF692Q9BU19 519 aaPredicted RBP24.07■■□□□ 1.44
HDGFL3-203ENST00000563404 CPSF1Q10570 1443 aaKnown RBP24.07■■□□□ 1.44
HDGFL3-203ENST00000563404 TOM1L2Q6ZVM7 507 aa24.06■■□□□ 1.44
HDGFL3-203ENST00000563404 WDR17Q8IZU2 1322 aa24.05■■□□□ 1.44
HDGFL3-203ENST00000563404 OVOS2A0A0G2JMS6 1433 aa24.04■■□□□ 1.44
HDGFL3-203ENST00000563404 OVOS2A0A0J9YW53 1432 aa24.04■■□□□ 1.44
HDGFL3-203ENST00000563404 OVOS2Q6IE36 1432 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms