RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 PIK3R4Q99570 1358 aa12.41□□□□□ -0.42
LINC00838-201ENST00000562956 COL3A1P02461 1466 aaPredicted RBP12.41□□□□□ -0.42
LINC00838-201ENST00000562956 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
LINC00838-201ENST00000562956 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.42
LINC00838-201ENST00000562956 DUSP27Q5VZP5 1158 aa12.41□□□□□ -0.42
LINC00838-201ENST00000562956 ACEP12821 1306 aa12.4□□□□□ -0.42
LINC00838-201ENST00000562956 PLEKHG3A1L390 1219 aa12.4□□□□□ -0.42
LINC00838-201ENST00000562956 NKTRP30414 1462 aaKnown RBP12.4□□□□□ -0.42
LINC00838-201ENST00000562956 SPINK5Q9NQ38 1064 aaPredicted RBP12.4□□□□□ -0.42
LINC00838-201ENST00000562956 POLKQ9UBT6 870 aa12.4□□□□□ -0.42
LINC00838-201ENST00000562956 PNPLA6Q8IY17 1366 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 PPP4R2Q9NY27 417 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 RRP1P56182 461 aaKnown RBP12.39□□□□□ -0.43
LINC00838-201ENST00000562956 SLFN5Q08AF3 891 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 TCP11L2Q8N4U5 519 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 RRP7AQ9Y3A4 280 aaKnown RBP12.39□□□□□ -0.43
LINC00838-201ENST00000562956 DMRT2Q9Y5R5 561 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 TOPAZ1Q8N9V7 1692 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 IQSEC2Q5JU85 1478 aa12.39□□□□□ -0.43
LINC00838-201ENST00000562956 MON2Q7Z3U7 1717 aa12.38□□□□□ -0.43
LINC00838-201ENST00000562956 U2SURPO15042 1029 aaKnown RBP12.38□□□□□ -0.43
LINC00838-201ENST00000562956 NEUROD2Q15784 382 aa12.38□□□□□ -0.43
LINC00838-201ENST00000562956 NGEFQ8N5V2 710 aa12.38□□□□□ -0.43
LINC00838-201ENST00000562956 PPM1GO15355 546 aaPredicted RBP12.38□□□□□ -0.43
LINC00838-201ENST00000562956 WWC1Q8IX03 1113 aa12.38□□□□□ -0.43
LINC00838-201ENST00000562956 TRMT2AQ8IZ69 625 aaKnown RBP12.38□□□□□ -0.43
LINC00838-201ENST00000562956 COG3Q96JB2 828 aa12.38□□□□□ -0.43
LINC00838-201ENST00000562956 AKAP12Q02952 1782 aa12.37□□□□□ -0.43
LINC00838-201ENST00000562956 PMFBP1Q8TBY8 1022 aa12.37□□□□□ -0.43
LINC00838-201ENST00000562956 TTC21BQ7Z4L5 1316 aa12.37□□□□□ -0.43
LINC00838-201ENST00000562956 DIAPH1O60610 1272 aaKnown RBP12.37□□□□□ -0.43
LINC00838-201ENST00000562956 EMILIN1Q9Y6C2 1016 aa12.37□□□□□ -0.43
LINC00838-201ENST00000562956 USP6P35125 1406 aa12.36□□□□□ -0.43
LINC00838-201ENST00000562956 ITSN1Q15811 1721 aa12.36□□□□□ -0.43
LINC00838-201ENST00000562956 SETD1BQ9UPS6 1966 aaKnown RBP12.36□□□□□ -0.43
LINC00838-201ENST00000562956 PLEKHF1Q96S99 279 aa12.36□□□□□ -0.43
LINC00838-201ENST00000562956 RBM33Q96EV2 1170 aaKnown RBP12.35□□□□□ -0.43
LINC00838-201ENST00000562956 NPHP4O75161 1426 aaPredicted RBP12.35□□□□□ -0.43
LINC00838-201ENST00000562956 E9PSI1 815 aa12.35□□□□□ -0.43
LINC00838-201ENST00000562956 B4GALNT3Q6L9W6 998 aa12.35□□□□□ -0.43
LINC00838-201ENST00000562956 PHF23Q9BUL5 403 aaPredicted RBP12.35□□□□□ -0.43
LINC00838-201ENST00000562956 AATKQ6ZMQ8 1374 aa12.35□□□□□ -0.43
LINC00838-201ENST00000562956 NRKQ7Z2Y5 1582 aa12.34□□□□□ -0.43
LINC00838-201ENST00000562956 RRS1Q15050 365 aaKnown RBP12.34□□□□□ -0.43
LINC00838-201ENST00000562956 SSH2Q76I76 1423 aa12.34□□□□□ -0.43
LINC00838-201ENST00000562956 PLIN1O60240 522 aa12.34□□□□□ -0.43
LINC00838-201ENST00000562956 NGDNQ8NEJ9 315 aaKnown RBP12.33□□□□□ -0.44
LINC00838-201ENST00000562956 CHD2O14647 1828 aaKnown RBP12.32□□□□□ -0.44
LINC00838-201ENST00000562956 CCDC27Q2M243 656 aa12.32□□□□□ -0.44
LINC00838-201ENST00000562956 ANKARQ7Z5J8 1434 aa12.32□□□□□ -0.44
LINC00838-201ENST00000562956 OVOS2A0A0J9YW53 1432 aa12.32□□□□□ -0.44
LINC00838-201ENST00000562956 OVOS2Q6IE36 1432 aa12.32□□□□□ -0.44
LINC00838-201ENST00000562956 RBM19Q9Y4C8 960 aaKnown RBP12.31□□□□□ -0.44
LINC00838-201ENST00000562956 CDK12Q9NYV4 1490 aaPredicted RBP12.31□□□□□ -0.44
LINC00838-201ENST00000562956 IL13P35225 146 aa12.31□□□□□ -0.44
LINC00838-201ENST00000562956 WDR63Q8IWG1 891 aa12.31□□□□□ -0.44
LINC00838-201ENST00000562956 EXOC6Q8TAG9 804 aa12.31□□□□□ -0.44
LINC00838-201ENST00000562956 TMPOP42166 694 aaKnown RBP12.3□□□□□ -0.44
LINC00838-201ENST00000562956 NCBP3Q53F19 620 aaKnown RBP12.3□□□□□ -0.44
LINC00838-201ENST00000562956 TTC21AQ8NDW8 1320 aa12.3□□□□□ -0.44
LINC00838-201ENST00000562956 MAPK8IP3Q9UPT6 1336 aa12.3□□□□□ -0.44
LINC00838-201ENST00000562956 MAP2P11137 1827 aaKnown RBP12.3□□□□□ -0.44
LINC00838-201ENST00000562956 FCHSD2O94868 740 aa12.3□□□□□ -0.44
LINC00838-201ENST00000562956 RSPH6AQ9H0K4 717 aa12.3□□□□□ -0.44
LINC00838-201ENST00000562956 RGPD8O14715 1765 aaPredicted RBP12.3□□□□□ -0.44
LINC00838-201ENST00000562956 NALCNQ8IZF0 1738 aa12.29□□□□□ -0.44
LINC00838-201ENST00000562956 FMN2Q9NZ56 1722 aa12.29□□□□□ -0.44
LINC00838-201ENST00000562956 HMOX1P09601 288 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 PRKAR2BP31323 418 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 TRIM35Q9UPQ4 493 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 USP31Q70CQ4 1352 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 C20orf194Q5TEA3 1177 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 PNNQ9H307 717 aaKnown RBP12.28□□□□□ -0.44
LINC00838-201ENST00000562956 LRRC7Q96NW7 1537 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 ADGRL3Q9HAR2 1447 aa12.28□□□□□ -0.44
LINC00838-201ENST00000562956 SOX12O15370 315 aa12.27□□□□□ -0.44
LINC00838-201ENST00000562956 CCDC136Q96JN2 1154 aa12.27□□□□□ -0.45
LINC00838-201ENST00000562956 RIPK4P57078 832 aa12.27□□□□□ -0.45
LINC00838-201ENST00000562956 BCAR3O75815 825 aa12.26□□□□□ -0.45
LINC00838-201ENST00000562956 PRKCSHP14314 528 aaPredicted RBP12.26□□□□□ -0.45
LINC00838-201ENST00000562956 PHACTR3Q96KR7 559 aa12.26□□□□□ -0.45
LINC00838-201ENST00000562956 C14orf37Q86TY3 774 aa12.26□□□□□ -0.45
LINC00838-201ENST00000562956 PHF8Q9UPP1 1060 aa12.26□□□□□ -0.45
LINC00838-201ENST00000562956 CRBNQ96SW2 442 aa12.25□□□□□ -0.45
LINC00838-201ENST00000562956 EIF4A2Q14240 407 aaKnown RBP12.25□□□□□ -0.45
LINC00838-201ENST00000562956 NLRP6P59044 892 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 HSP90AB2PQ58FF8 381 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 NUTM2GQ5VZR2 741 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 MYH16Q9H6N6 1097 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 NWD1Q149M9 1564 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 PIK3C2AO00443 1686 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 ESCO1Q5FWF5 840 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 MAP3K19Q56UN5 1328 aa12.24□□□□□ -0.45
LINC00838-201ENST00000562956 PAK3O75914 559 aaPredicted RBP12.24□□□□□ -0.45
LINC00838-201ENST00000562956 HSPA2P54652 639 aa12.23□□□□□ -0.45
LINC00838-201ENST00000562956 PROSER2Q86WR7 435 aaPredicted RBP12.23□□□□□ -0.45
LINC00838-201ENST00000562956 TSR2Q969E8 191 aaKnown RBP12.23□□□□□ -0.45
LINC00838-201ENST00000562956 PEAK1Q9H792 1746 aa12.23□□□□□ -0.45
LINC00838-201ENST00000562956 MSH5O43196 834 aa12.23□□□□□ -0.45
LINC00838-201ENST00000562956 NEFMP07197 916 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms