RNA–Protein interactions for RNA: ENST00000562747.1

CDT1-202, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 2

Gene CDT1, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-202ENST00000562747 COL14A1Q05707 1796 aaKnown RBP23.74■■□□□ 1.39
CDT1-202ENST00000562747 NBPF1Q3BBV0 1214 aa23.74■■□□□ 1.39
CDT1-202ENST00000562747 CCDC9Q9Y3X0 531 aaKnown RBP23.74■■□□□ 1.39
CDT1-202ENST00000562747 TRPM1Q7Z4N2 1603 aa23.73■■□□□ 1.39
CDT1-202ENST00000562747 ONECUT3O60422 494 aaPredicted RBP23.73■■□□□ 1.39
CDT1-202ENST00000562747 CLSPNQ9HAW4 1339 aa23.73■■□□□ 1.39
CDT1-202ENST00000562747 MINK1Q8N4C8 1332 aaPredicted RBP23.72■■□□□ 1.39
CDT1-202ENST00000562747 KRT27Q7Z3Y8 459 aa23.7■■□□□ 1.38
CDT1-202ENST00000562747 ITSN1Q15811 1721 aa23.67■■□□□ 1.38
CDT1-202ENST00000562747 THSD7AQ9UPZ6 1657 aa23.67■■□□□ 1.38
CDT1-202ENST00000562747 LRP5O75197 1615 aa23.67■■□□□ 1.38
CDT1-202ENST00000562747 BTG4Q9NY30 223 aa23.67■■□□□ 1.38
CDT1-202ENST00000562747 ROCK2O75116 1388 aaKnown RBP23.66■■□□□ 1.38
CDT1-202ENST00000562747 EIF3AQ14152 1382 aaKnown RBP23.66■■□□□ 1.38
CDT1-202ENST00000562747 GPRASP1Q5JY77 1395 aa23.66■■□□□ 1.38
CDT1-202ENST00000562747 FAM98CQ17RN3 349 aaKnown RBP23.66■■□□□ 1.38
CDT1-202ENST00000562747 NBPF8Q3BBV2 869 aa23.66■■□□□ 1.38
CDT1-202ENST00000562747 ATP7BP35670 1465 aa23.66■■□□□ 1.38
CDT1-202ENST00000562747 PHRF1Q9P1Y6 1649 aaKnown RBP23.66■■□□□ 1.38
CDT1-202ENST00000562747 WASLO00401 505 aaPredicted RBP23.65■■□□□ 1.38
CDT1-202ENST00000562747 SF3B2Q13435 895 aaKnown RBP23.65■■□□□ 1.38
CDT1-202ENST00000562747 A0A0G2JS52 829 aa23.64■■□□□ 1.37
CDT1-202ENST00000562747 MYT1Q01538 1121 aa23.64■■□□□ 1.37
CDT1-202ENST00000562747 RGPD1P0DJD0 1748 aa23.64■■□□□ 1.37
CDT1-202ENST00000562747 TNS1Q9HBL0 1735 aaKnown RBP23.63■■□□□ 1.37
CDT1-202ENST00000562747 TOPAZ1Q8N9V7 1692 aa23.63■■□□□ 1.37
CDT1-202ENST00000562747 CENPJQ9HC77 1338 aaPredicted RBP23.6■■□□□ 1.37
CDT1-202ENST00000562747 SPATA31A5Q5VU36 1347 aa23.59■■□□□ 1.37
CDT1-202ENST00000562747 SPATA31A7Q8IWB4 1347 aa23.59■■□□□ 1.37
CDT1-202ENST00000562747 FAM182BQ5T319 152 aa23.59■■□□□ 1.37
CDT1-202ENST00000562747 NGDNQ8NEJ9 315 aaKnown RBP23.59■■□□□ 1.37
CDT1-202ENST00000562747 TIMELESSQ9UNS1 1208 aa23.59■■□□□ 1.37
CDT1-202ENST00000562747 PAK3O75914 559 aaPredicted RBP23.57■■□□□ 1.36
CDT1-202ENST00000562747 CCER1Q8TC90 406 aaPredicted RBP23.57■■□□□ 1.36
CDT1-202ENST00000562747 PSDA5PKW4 1024 aaPredicted RBP23.56■■□□□ 1.36
CDT1-202ENST00000562747 QRICH2Q9H0J4 1663 aa23.56■■□□□ 1.36
CDT1-202ENST00000562747 BAG6P46379 1132 aa23.55■■□□□ 1.36
CDT1-202ENST00000562747 PRDM11Q9NQV5 511 aa23.55■■□□□ 1.36
CDT1-202ENST00000562747 KIAA0232Q92628 1395 aa23.54■■□□□ 1.36
CDT1-202ENST00000562747 NRKQ7Z2Y5 1582 aa23.54■■□□□ 1.36
CDT1-202ENST00000562747 NUDT16Q96DE0 195 aaKnown RBP23.54■■□□□ 1.36
CDT1-202ENST00000562747 CARD11Q9BXL7 1154 aa23.54■■□□□ 1.36
CDT1-202ENST00000562747 EN1Q05925 392 aaPredicted RBP23.52■■□□□ 1.36
CDT1-202ENST00000562747 CHRNA2Q15822 529 aa23.52■■□□□ 1.36
CDT1-202ENST00000562747 CDK19Q9BWU1 502 aa23.52■■□□□ 1.36
CDT1-202ENST00000562747 DISP2A7MBM2 1401 aa23.51■■□□□ 1.35
CDT1-202ENST00000562747 SPATA31A1Q5TZJ5 1347 aa23.51■■□□□ 1.35
CDT1-202ENST00000562747 POLR3AO14802 1390 aaPredicted RBP23.51■■□□□ 1.35
CDT1-202ENST00000562747 NUTM2GQ5VZR2 741 aa23.5■■□□□ 1.35
CDT1-202ENST00000562747 LMO7Q8WWI1 1683 aa23.49■■□□□ 1.35
CDT1-202ENST00000562747 ZC3H6P61129 1189 aaKnown RBP23.47■■□□□ 1.35
CDT1-202ENST00000562747 ACEP12821 1306 aa23.46■■□□□ 1.35
CDT1-202ENST00000562747 STRN4Q9NRL3 753 aa23.46■■□□□ 1.35
CDT1-202ENST00000562747 CAMTA1Q9Y6Y1 1673 aa23.45■■□□□ 1.34
CDT1-202ENST00000562747 SSH2Q76I76 1423 aa23.45■■□□□ 1.34
CDT1-202ENST00000562747 SBNO2Q9Y2G9 1366 aa23.45■■□□□ 1.34
CDT1-202ENST00000562747 EVC2Q86UK5 1308 aa23.45■■□□□ 1.34
CDT1-202ENST00000562747 SRPK2P78362 688 aaKnown RBP23.45■■□□□ 1.34
CDT1-202ENST00000562747 CCDC61Q9Y6R9 512 aa23.45■■□□□ 1.34
CDT1-202ENST00000562747 RREB1Q92766 1687 aa23.44■■□□□ 1.34
CDT1-202ENST00000562747 R3HDM1Q15032 1099 aaKnown RBP23.43■■□□□ 1.34
CDT1-202ENST00000562747 EZH2Q15910 746 aaKnown RBP23.43■■□□□ 1.34
CDT1-202ENST00000562747 CABP2Q9NPB3 220 aa23.41■■□□□ 1.34
CDT1-202ENST00000562747 NUP188Q5SRE5 1749 aa23.41■■□□□ 1.34
CDT1-202ENST00000562747 USP19O94966 1318 aa23.4■■□□□ 1.34
CDT1-202ENST00000562747 PLEKHG3A1L390 1219 aa23.4■■□□□ 1.34
CDT1-202ENST00000562747 TRIM37O94972 964 aa23.4■■□□□ 1.34
CDT1-202ENST00000562747 USP35Q9P2H5 1018 aa23.4■■□□□ 1.34
CDT1-202ENST00000562747 CAMKK2Q96RR4 588 aa23.39■■□□□ 1.33
CDT1-202ENST00000562747 CPDO75976 1380 aa23.39■■□□□ 1.33
CDT1-202ENST00000562747 PPIP5K1Q6PFW1 1433 aa23.38■■□□□ 1.33
CDT1-202ENST00000562747 PARP4Q9UKK3 1724 aaKnown RBP23.37■■□□□ 1.33
CDT1-202ENST00000562747 LARP1Q6PKG0 1096 aaKnown RBP23.37■■□□□ 1.33
CDT1-202ENST00000562747 FAM196AQ6ZSG2 479 aa23.37■■□□□ 1.33
CDT1-202ENST00000562747 BARGINQ6ZT62 677 aa23.36■■□□□ 1.33
CDT1-202ENST00000562747 ABTB2Q8N961 1025 aa23.36■■□□□ 1.33
CDT1-202ENST00000562747 COL5A2P05997 1499 aaPredicted RBP23.35■■□□□ 1.33
CDT1-202ENST00000562747 SLC24A1O60721 1099 aa23.33■■□□□ 1.33
CDT1-202ENST00000562747 APBA3O96018 575 aa23.33■■□□□ 1.33
CDT1-202ENST00000562747 EVA1CP58658 441 aa23.33■■□□□ 1.33
CDT1-202ENST00000562747 USP47Q96K76 1375 aa23.32■■□□□ 1.32
CDT1-202ENST00000562747 ST20-MTHFSA0A0A6YYL1 179 aa23.32■■□□□ 1.32
CDT1-202ENST00000562747 PEAK1Q9H792 1746 aa23.32■■□□□ 1.32
CDT1-202ENST00000562747 PIK3C2AO00443 1686 aa23.32■■□□□ 1.32
CDT1-202ENST00000562747 PARD3Q8TEW0 1356 aa23.31■■□□□ 1.32
CDT1-202ENST00000562747 LRRC37A3O60309 1634 aa23.31■■□□□ 1.32
CDT1-202ENST00000562747 TCP11L2Q8N4U5 519 aa23.31■■□□□ 1.32
CDT1-202ENST00000562747 CABP1Q9NZU7 370 aa23.31■■□□□ 1.32
CDT1-202ENST00000562747 SLIT3O75094 1523 aa23.31■■□□□ 1.32
CDT1-202ENST00000562747 GCP02774 474 aa23.3■■□□□ 1.32
CDT1-202ENST00000562747 PDE3BQ13370 1112 aa23.3■■□□□ 1.32
CDT1-202ENST00000562747 TESK2Q96S53 571 aa23.3■■□□□ 1.32
CDT1-202ENST00000562747 WNK3Q9BYP7 1800 aa23.3■■□□□ 1.32
CDT1-202ENST00000562747 USP6P35125 1406 aa23.29■■□□□ 1.32
CDT1-202ENST00000562747 PUS7Q96PZ0 661 aaKnown RBP23.29■■□□□ 1.32
CDT1-202ENST00000562747 BRD4O60885 1362 aaPredicted RBP23.28■■□□□ 1.32
CDT1-202ENST00000562747 COL18A1P39060 1754 aa23.28■■□□□ 1.32
CDT1-202ENST00000562747 NLRP13Q86W25 1043 aa23.28■■□□□ 1.32
CDT1-202ENST00000562747 SBF2Q86WG5 1849 aa23.26■■□□□ 1.31
CDT1-202ENST00000562747 CRB1P82279 1406 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms