RNA–Protein interactions for RNA: ENST00000560734.5

SHF-208, Transcript of Src homology 2 domain containing F, human

TSL 3 BASIC

Gene SHF, Length 1,731 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHF-208	ENST00000560734	XRN1	Q8IZH2	1706 aa	Known RBP	32.98	■■■□□ 2.87
SHF-208	ENST00000560734		E9PSI1	815 aa		32.98	■■■□□ 2.87
SHF-208	ENST00000560734	CCDC27	Q2M243	656 aa		32.98	■■■□□ 2.87
SHF-208	ENST00000560734	SLC26A8	Q96RN1	970 aa		32.98	■■■□□ 2.87
SHF-208	ENST00000560734	ITSN1	Q15811	1721 aa		32.98	■■■□□ 2.87
SHF-208	ENST00000560734	PHF23	Q9BUL5	403 aa	Predicted RBP	32.97	■■■□□ 2.87
SHF-208	ENST00000560734	AMOTL2	Q9Y2J4	779 aa		32.97	■■■□□ 2.87
SHF-208	ENST00000560734	PLEKHG3	A1L390	1219 aa		32.95	■■■□□ 2.87
SHF-208	ENST00000560734	AATK	Q6ZMQ8	1374 aa		32.94	■■■□□ 2.86
SHF-208	ENST00000560734	PRR36	Q9H6K5	1346 aa		32.94	■■■□□ 2.86
SHF-208	ENST00000560734	WWC1	Q8IX03	1113 aa		32.91	■■■□□ 2.86
SHF-208	ENST00000560734	NKTR	P30414	1462 aa	Known RBP	32.91	■■■□□ 2.86
SHF-208	ENST00000560734	SETD1B	Q9UPS6	1966 aa	Known RBP	32.91	■■■□□ 2.86
SHF-208	ENST00000560734	WDR63	Q8IWG1	891 aa		32.9	■■■□□ 2.86
SHF-208	ENST00000560734	PNN	Q9H307	717 aa	Known RBP	32.9	■■■□□ 2.86
SHF-208	ENST00000560734	TCP11L2	Q8N4U5	519 aa		32.89	■■■□□ 2.86
SHF-208	ENST00000560734	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.88	■■■□□ 2.85
SHF-208	ENST00000560734	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.88	■■■□□ 2.85
SHF-208	ENST00000560734	PLPPR3	Q6T4P5	718 aa		32.88	■■■□□ 2.85
SHF-208	ENST00000560734	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.88	■■■□□ 2.85
SHF-208	ENST00000560734	DIAPH1	O60610	1272 aa	Known RBP	32.86	■■■□□ 2.85
SHF-208	ENST00000560734	ANKLE2	Q86XL3	938 aa		32.86	■■■□□ 2.85
SHF-208	ENST00000560734	NRK	Q7Z2Y5	1582 aa		32.86	■■■□□ 2.85
SHF-208	ENST00000560734	POLK	Q9UBT6	870 aa		32.84	■■■□□ 2.85
SHF-208	ENST00000560734	B4GALNT3	Q6L9W6	998 aa		32.83	■■■□□ 2.85
SHF-208	ENST00000560734	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.83	■■■□□ 2.85
SHF-208	ENST00000560734	COG3	Q96JB2	828 aa		32.82	■■■□□ 2.84
SHF-208	ENST00000560734	PLEKHF1	Q96S99	279 aa		32.82	■■■□□ 2.84
SHF-208	ENST00000560734	ANKAR	Q7Z5J8	1434 aa		32.82	■■■□□ 2.84
SHF-208	ENST00000560734	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	32.8	■■■□□ 2.84
SHF-208	ENST00000560734	NME9	Q86XW9	330 aa		32.8	■■■□□ 2.84
SHF-208	ENST00000560734	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.8	■■■□□ 2.84
SHF-208	ENST00000560734	USP6	P35125	1406 aa		32.79	■■■□□ 2.84
SHF-208	ENST00000560734	NCKAP5L	Q9HCH0	1330 aa		32.79	■■■□□ 2.84
SHF-208	ENST00000560734	CCDC136	Q96JN2	1154 aa		32.79	■■■□□ 2.84
SHF-208	ENST00000560734	ACE	P12821	1306 aa		32.78	■■■□□ 2.84
SHF-208	ENST00000560734	MAP2	P11137	1827 aa	Known RBP	32.77	■■■□□ 2.84
SHF-208	ENST00000560734	SSH2	Q76I76	1423 aa		32.77	■■■□□ 2.84
SHF-208	ENST00000560734	TTC21B	Q7Z4L5	1316 aa		32.77	■■■□□ 2.84
SHF-208	ENST00000560734	FCHSD2	O94868	740 aa		32.77	■■■□□ 2.84
SHF-208	ENST00000560734	CHD2	O14647	1828 aa	Known RBP	32.75	■■■□□ 2.83
SHF-208	ENST00000560734	U2SURP	O15042	1029 aa	Known RBP	32.75	■■■□□ 2.83
SHF-208	ENST00000560734	TTC21A	Q8NDW8	1320 aa		32.74	■■■□□ 2.83
SHF-208	ENST00000560734	MAPK8IP3	Q9UPT6	1336 aa		32.72	■■■□□ 2.83
SHF-208	ENST00000560734	DMRT2	Q9Y5R5	561 aa		32.72	■■■□□ 2.83
SHF-208	ENST00000560734	OVOS2	A0A0J9YW53	1432 aa		32.72	■■■□□ 2.83
SHF-208	ENST00000560734	OVOS2	Q6IE36	1432 aa		32.72	■■■□□ 2.83
SHF-208	ENST00000560734	KCNA6	P17658	529 aa		32.71	■■■□□ 2.83
SHF-208	ENST00000560734	EXOC6	Q8TAG9	804 aa		32.71	■■■□□ 2.83
SHF-208	ENST00000560734	TMPO	P42166	694 aa	Known RBP	32.69	■■■□□ 2.82
SHF-208	ENST00000560734	MYH16	Q9H6N6	1097 aa		32.69	■■■□□ 2.82
SHF-208	ENST00000560734	NALCN	Q8IZF0	1738 aa		32.69	■■■□□ 2.82
SHF-208	ENST00000560734	FMN2	Q9NZ56	1722 aa		32.69	■■■□□ 2.82
SHF-208	ENST00000560734	RRP7A	Q9Y3A4	280 aa	Known RBP	32.68	■■■□□ 2.82
SHF-208	ENST00000560734	IL16	Q14005	1332 aa		32.68	■■■□□ 2.82
SHF-208	ENST00000560734	USP31	Q70CQ4	1352 aa		32.68	■■■□□ 2.82
SHF-208	ENST00000560734	NEUROD2	Q15784	382 aa		32.66	■■■□□ 2.82
SHF-208	ENST00000560734	IL13	P35225	146 aa		32.65	■■■□□ 2.82
SHF-208	ENST00000560734	CT47B1	P0C2W7	299 aa	Predicted RBP	32.65	■■■□□ 2.82
SHF-208	ENST00000560734	RSPH6A	Q9H0K4	717 aa		32.64	■■■□□ 2.82
SHF-208	ENST00000560734	ZRANB1	Q9UGI0	708 aa		32.64	■■■□□ 2.82
SHF-208	ENST00000560734	LRRC7	Q96NW7	1537 aa		32.63	■■■□□ 2.81
SHF-208	ENST00000560734	PLIN1	O60240	522 aa		32.63	■■■□□ 2.81
SHF-208	ENST00000560734	EMILIN1	Q9Y6C2	1016 aa		32.63	■■■□□ 2.81
SHF-208	ENST00000560734	NPHP4	O75161	1426 aa	Predicted RBP	32.63	■■■□□ 2.81
SHF-208	ENST00000560734	RBM19	Q9Y4C8	960 aa	Known RBP	32.63	■■■□□ 2.81
SHF-208	ENST00000560734	NEFM	P07197	916 aa		32.62	■■■□□ 2.81
SHF-208	ENST00000560734	PPM1G	O15355	546 aa	Predicted RBP	32.6	■■■□□ 2.81
SHF-208	ENST00000560734	TRIM35	Q9UPQ4	493 aa		32.6	■■■□□ 2.81
SHF-208	ENST00000560734	MYT1	Q01538	1121 aa		32.59	■■■□□ 2.81
SHF-208	ENST00000560734	CRBN	Q96SW2	442 aa		32.59	■■■□□ 2.81
SHF-208	ENST00000560734	LMTK3	Q96Q04	1460 aa		32.58	■■■□□ 2.81
SHF-208	ENST00000560734	RGPD8	O14715	1765 aa	Predicted RBP	32.57	■■■□□ 2.8
SHF-208	ENST00000560734	FBLN1	P23142	703 aa		32.57	■■■□□ 2.8
SHF-208	ENST00000560734	NGDN	Q8NEJ9	315 aa	Known RBP	32.57	■■■□□ 2.8
SHF-208	ENST00000560734	USP54	Q70EL1	1684 aa		32.56	■■■□□ 2.8
SHF-208	ENST00000560734	NUTM2F	A1L443	756 aa		32.56	■■■□□ 2.8
SHF-208	ENST00000560734	PDE3A	Q14432	1141 aa		32.56	■■■□□ 2.8
SHF-208	ENST00000560734	RIPK4	P57078	832 aa		32.54	■■■□□ 2.8
SHF-208	ENST00000560734	NWD1	Q149M9	1564 aa		32.54	■■■□□ 2.8
SHF-208	ENST00000560734	ADGRL3	Q9HAR2	1447 aa		32.54	■■■□□ 2.8
SHF-208	ENST00000560734	PRKAR2B	P31323	418 aa		32.54	■■■□□ 2.8
SHF-208	ENST00000560734	RRS1	Q15050	365 aa	Known RBP	32.51	■■■□□ 2.8
SHF-208	ENST00000560734	C20orf194	Q5TEA3	1177 aa		32.51	■■■□□ 2.8
SHF-208	ENST00000560734	RARS	P54136	660 aa	Known RBP	32.51	■■■□□ 2.79
SHF-208	ENST00000560734	NFE2L2	Q16236	605 aa		32.51	■■■□□ 2.79
SHF-208	ENST00000560734	PMFBP1	Q8TBY8	1022 aa		32.51	■■■□□ 2.79
SHF-208	ENST00000560734	BCAR3	O75815	825 aa		32.49	■■■□□ 2.79
SHF-208	ENST00000560734	CALD1	Q05682	793 aa	Known RBP	32.49	■■■□□ 2.79
SHF-208	ENST00000560734	KIF24	Q5T7B8	1368 aa		32.48	■■■□□ 2.79
SHF-208	ENST00000560734	PIK3C2A	O00443	1686 aa		32.47	■■■□□ 2.79
SHF-208	ENST00000560734	FANCI	Q9NVI1	1328 aa		32.47	■■■□□ 2.79
SHF-208	ENST00000560734	AAMP	Q13685	434 aa		32.46	■■■□□ 2.79
SHF-208	ENST00000560734	LMOD3	Q0VAK6	560 aa		32.45	■■■□□ 2.78
SHF-208	ENST00000560734	PEAK1	Q9H792	1746 aa		32.43	■■■□□ 2.78
SHF-208	ENST00000560734	SBNO1	A3KN83	1393 aa		32.43	■■■□□ 2.78
SHF-208	ENST00000560734	RGPD1	P0DJD0	1748 aa		32.43	■■■□□ 2.78
SHF-208	ENST00000560734	EIF4A2	Q14240	407 aa	Known RBP	32.42	■■■□□ 2.78
SHF-208	ENST00000560734	HMOX1	P09601	288 aa		32.41	■■■□□ 2.78
SHF-208	ENST00000560734	PHF8	Q9UPP1	1060 aa		32.41	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 61 ms