RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PAK3O75914 559 aaPredicted RBP18.13■□□□□ 0.49
NEDD8-208ENST00000560427 HDGFL2Q7Z4V5 671 aaPredicted RBP18.13■□□□□ 0.49
NEDD8-208ENST00000560427 TMC1Q8TDI8 760 aa18.13■□□□□ 0.49
NEDD8-208ENST00000560427 KTN1Q86UP2 1357 aaKnown RBP18.13■□□□□ 0.49
NEDD8-208ENST00000560427 ABCA3Q99758 1704 aa18.12■□□□□ 0.49
NEDD8-208ENST00000560427 NUTM2BA6NNL0 878 aaPredicted RBP18.12■□□□□ 0.49
NEDD8-208ENST00000560427 NUTM2EB1AL46 878 aaPredicted RBP18.12■□□□□ 0.49
NEDD8-208ENST00000560427 MEX3CQ5U5Q3 659 aaKnown RBP18.12■□□□□ 0.49
NEDD8-208ENST00000560427 LMOD2Q6P5Q4 547 aa18.12■□□□□ 0.49
NEDD8-208ENST00000560427 NUTM2AQ8IVF1 878 aaPredicted RBP18.12■□□□□ 0.49
NEDD8-208ENST00000560427 TTC21AQ8NDW8 1320 aa18.12■□□□□ 0.49
NEDD8-208ENST00000560427 ANKRD36BQ8N2N9 1353 aa18.12■□□□□ 0.49
NEDD8-208ENST00000560427 PHF23Q9BUL5 403 aaPredicted RBP18.11■□□□□ 0.49
NEDD8-208ENST00000560427 SLC12A5Q9H2X9 1139 aa18.11■□□□□ 0.49
NEDD8-208ENST00000560427 A0A1W2PP64 1363 aa18.11■□□□□ 0.49
NEDD8-208ENST00000560427 EDC4Q6P2E9 1401 aaKnown RBP18.1■□□□□ 0.49
NEDD8-208ENST00000560427 CRYBG1Q9Y4K1 1723 aa18.09■□□□□ 0.49
NEDD8-208ENST00000560427 MYOM1P52179 1685 aa18.09■□□□□ 0.49
NEDD8-208ENST00000560427 TTC21BQ7Z4L5 1316 aa18.08■□□□□ 0.49
NEDD8-208ENST00000560427 ZEB1P37275 1124 aaPredicted RBP18.08■□□□□ 0.48
NEDD8-208ENST00000560427 HAP1P54257 671 aaPredicted RBP18.08■□□□□ 0.48
NEDD8-208ENST00000560427 ABTB2Q8N961 1025 aa18.08■□□□□ 0.48
NEDD8-208ENST00000560427 MARF1Q9Y4F3 1742 aaKnown RBP18.08■□□□□ 0.48
NEDD8-208ENST00000560427 USP19O94966 1318 aa18.07■□□□□ 0.48
NEDD8-208ENST00000560427 PIK3C2AO00443 1686 aa18.07■□□□□ 0.48
NEDD8-208ENST00000560427 PHRF1Q9P1Y6 1649 aaKnown RBP18.07■□□□□ 0.48
NEDD8-208ENST00000560427 ADAMTS2O95450 1211 aa18.06■□□□□ 0.48
NEDD8-208ENST00000560427 NLRP13Q86W25 1043 aa18.06■□□□□ 0.48
NEDD8-208ENST00000560427 USP54Q70EL1 1684 aa18.05■□□□□ 0.48
NEDD8-208ENST00000560427 SLIT3O75094 1523 aa18.04■□□□□ 0.48
NEDD8-208ENST00000560427 ZNF772Q68DY9 489 aaPredicted RBP18.04■□□□□ 0.48
NEDD8-208ENST00000560427 C8orf37Q96NL8 207 aa18.04■□□□□ 0.48
NEDD8-208ENST00000560427 USP31Q70CQ4 1352 aa18.04■□□□□ 0.48
NEDD8-208ENST00000560427 CABLES1Q8TDN4 633 aa18.03■□□□□ 0.48
NEDD8-208ENST00000560427 FNBP4Q8N3X1 1017 aaPredicted RBP18.02■□□□□ 0.48
NEDD8-208ENST00000560427 NGLY1Q96IV0 654 aa18.02■□□□□ 0.48
NEDD8-208ENST00000560427 AFF2P51816 1311 aa18.01■□□□□ 0.47
NEDD8-208ENST00000560427 NLRP6P59044 892 aa18.01■□□□□ 0.47
NEDD8-208ENST00000560427 SLIT2O94813 1529 aa18.01■□□□□ 0.47
NEDD8-208ENST00000560427 CPDO75976 1380 aa18.01■□□□□ 0.47
NEDD8-208ENST00000560427 COL14A1Q05707 1796 aaKnown RBP18■□□□□ 0.47
NEDD8-208ENST00000560427 NUTM2GQ5VZR2 741 aa18■□□□□ 0.47
NEDD8-208ENST00000560427 RGS17Q9UGC6 210 aaPredicted RBP18■□□□□ 0.47
NEDD8-208ENST00000560427 KIF7Q2M1P5 1343 aa17.99■□□□□ 0.47
NEDD8-208ENST00000560427 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.99■□□□□ 0.47
NEDD8-208ENST00000560427 NWD2Q9ULI1 1742 aa17.99■□□□□ 0.47
NEDD8-208ENST00000560427 GCP02774 474 aa17.99■□□□□ 0.47
NEDD8-208ENST00000560427 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.99■□□□□ 0.47
NEDD8-208ENST00000560427 KCNH5Q8NCM2 988 aa17.99■□□□□ 0.47
NEDD8-208ENST00000560427 OVOS2A0A0J9YW53 1432 aa17.98■□□□□ 0.47
NEDD8-208ENST00000560427 OVOS2Q6IE36 1432 aa17.98■□□□□ 0.47
NEDD8-208ENST00000560427 C11orf95C9JLR9 678 aaPredicted RBP17.98■□□□□ 0.47
NEDD8-208ENST00000560427 PLCH1Q4KWH8 1693 aa17.97■□□□□ 0.47
NEDD8-208ENST00000560427 KIAA0232Q92628 1395 aa17.97■□□□□ 0.47
NEDD8-208ENST00000560427 NME9Q86XW9 330 aa17.97■□□□□ 0.47
NEDD8-208ENST00000560427 POLR3GLQ9BT43 218 aa17.97■□□□□ 0.47
NEDD8-208ENST00000560427 PRDM11Q9NQV5 511 aa17.97■□□□□ 0.47
NEDD8-208ENST00000560427 NSD3Q9BZ95 1437 aa17.97■□□□□ 0.47
NEDD8-208ENST00000560427 BCL9LQ86UU0 1499 aa17.96■□□□□ 0.47
NEDD8-208ENST00000560427 PLEKHG5O94827 1062 aa17.96■□□□□ 0.47
NEDD8-208ENST00000560427 USP21Q9UK80 565 aa17.96■□□□□ 0.47
NEDD8-208ENST00000560427 CCDC7Q96M83 1385 aa17.95■□□□□ 0.46
NEDD8-208ENST00000560427 NFAT5O94916 1531 aa17.95■□□□□ 0.46
NEDD8-208ENST00000560427 ABCC6O95255 1503 aa17.95■□□□□ 0.46
NEDD8-208ENST00000560427 FAM83GA6ND36 823 aa17.94■□□□□ 0.46
NEDD8-208ENST00000560427 UNC5CLQ8IV45 518 aa17.94■□□□□ 0.46
NEDD8-208ENST00000560427 TRPC5Q9UL62 973 aaPredicted RBP17.94■□□□□ 0.46
NEDD8-208ENST00000560427 ATRNO75882 1429 aa17.94■□□□□ 0.46
NEDD8-208ENST00000560427 KIF20BQ96Q89 1820 aa17.93■□□□□ 0.46
NEDD8-208ENST00000560427 COG3Q96JB2 828 aa17.93■□□□□ 0.46
NEDD8-208ENST00000560427 CARD14Q9BXL6 1004 aa17.93■□□□□ 0.46
NEDD8-208ENST00000560427 CGNL1Q0VF96 1302 aa17.93■□□□□ 0.46
NEDD8-208ENST00000560427 LMO7Q8WWI1 1683 aa17.93■□□□□ 0.46
NEDD8-208ENST00000560427 NRAPQ86VF7 1730 aa17.92■□□□□ 0.46
NEDD8-208ENST00000560427 ZC3H6P61129 1189 aaKnown RBP17.92■□□□□ 0.46
NEDD8-208ENST00000560427 POTEAQ6S8J7 498 aa17.92■□□□□ 0.46
NEDD8-208ENST00000560427 WASHC2AQ641Q2 1341 aa17.92■□□□□ 0.46
NEDD8-208ENST00000560427 AATKQ6ZMQ8 1374 aa17.91■□□□□ 0.46
NEDD8-208ENST00000560427 CDK12Q9NYV4 1490 aaPredicted RBP17.91■□□□□ 0.46
NEDD8-208ENST00000560427 FYB1O15117 783 aa17.91■□□□□ 0.46
NEDD8-208ENST00000560427 NSD2O96028 1365 aa17.91■□□□□ 0.46
NEDD8-208ENST00000560427 PANK3Q9H999 370 aa17.9■□□□□ 0.46
NEDD8-208ENST00000560427 BTG4Q9NY30 223 aa17.9■□□□□ 0.46
NEDD8-208ENST00000560427 RBM6P78332 1123 aaKnown RBP17.89■□□□□ 0.45
NEDD8-208ENST00000560427 QTRT2Q9H974 415 aaKnown RBP17.89■□□□□ 0.45
NEDD8-208ENST00000560427 ZRANB1Q9UGI0 708 aa17.89■□□□□ 0.45
NEDD8-208ENST00000560427 RXRBP28702 533 aa17.88■□□□□ 0.45
NEDD8-208ENST00000560427 VPS72Q15906 364 aa17.88■□□□□ 0.45
NEDD8-208ENST00000560427 ARHGEF25Q86VW2 580 aa17.88■□□□□ 0.45
NEDD8-208ENST00000560427 CHRNA2Q15822 529 aa17.87■□□□□ 0.45
NEDD8-208ENST00000560427 CAMTA1Q9Y6Y1 1673 aa17.87■□□□□ 0.45
NEDD8-208ENST00000560427 GGNBP2Q9H3C7 697 aa17.86■□□□□ 0.45
NEDD8-208ENST00000560427 COL5A2P05997 1499 aaPredicted RBP17.86■□□□□ 0.45
NEDD8-208ENST00000560427 ANKRD26Q9UPS8 1709 aa17.86■□□□□ 0.45
NEDD8-208ENST00000560427 SOX12O15370 315 aa17.85■□□□□ 0.45
NEDD8-208ENST00000560427 COL18A1P39060 1754 aa17.85■□□□□ 0.45
NEDD8-208ENST00000560427 GJD4Q96KN9 370 aaPredicted RBP17.85■□□□□ 0.45
NEDD8-208ENST00000560427 KNSTRNQ9Y448 316 aa17.85■□□□□ 0.45
NEDD8-208ENST00000560427 RTL1A6NKG5 1358 aa17.84■□□□□ 0.45
NEDD8-208ENST00000560427 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms